Testing the systematic position and relationships of Paracreptotrema heterandriae within the Allocreadiidae through partial 28s rRNA gene sequences.

The genus Paracreptotrema Choudhury, Pérez-Ponce de León, Brooks and Daverdin, 2006 (Digenea), comprises 4 species that parasitize poeciliid and cyprinodontid fishes in Middle America. Based on morphological characters exhibited by adults of the type species (Paracreptotrema blancoi Choudhury, Pérez-Ponce de León, Brooks and Daverdin, 2006 ) the genus was tentatively assigned to Allocreadiidae Looss, 1902. We sequenced domains D1-D3 of the 28S rRNA gene of several specimens of Paracreptotrema heterandriae Salgado-Maldonado, Caspeta-Mandujano and Vázquez, 2012 , and analyzed these in a phylogenetic context along with 10 allocreadiid taxa plus several xiphidiatan and 2 monorchiatan digeneans, in order to test the proposed inclusion of P. heterandriae in Allocreadiidae. Maximum likelihood and Bayesian inference analyses of 28S rRNA gene sequences confirmed the classification of Paracreptotrema as an allocreadiid. In the phylogenetic trees, Paracreptotrema appears to be the sister taxon of Creptotrematina aguirrepequenoi Jiménez-Guzmán, 1973, and both are closely related to Auriculostoma Scholz, Aguirre-Macedo, and Choudhury, 2004, with Wallinia Pearse, 1920, as the sister taxon of all these genera; nevertheless, the interrelationships between these 4 genera were not totally resolved. ITS2 sequences of several specimens of P. heterandriae showed null intraspecific variation. Scanning electron microscopy microphotograph demonstrated the presence of 13 and 4 dome-like papillae arranged around the outer and inner edges of the oral sucker, respectively.

Three new genera in Chytridiales from aquatic habitats in Argentina.

Sampling for chytrids in a variety of habitats has resulted in pure cultures that when analyzed have yielded hypotheses of relationships based on molecular and zoospore ultrastructural markers. To extend our understanding of diversity of Chytridiales in eastern Argentina and USA, we isolated and examined the morphology, ultrastructure and 28S and ITS1-5.8S-ITS2 rDNA sequences of numerous chytrids from aquatic habitats from these two regions. Three family-level lineages (Chytridiaceae, Chytriomycetaceae, family incertae sedis) are represented in our molecular phylogeny, and three new genera (Avachytrium, Odontochytrium in Chytriomycetaceae, Delfinachytrium in family incertae sedis) are described. These findings of new genera and species emphasize the potential for discovery of additional diversity.

Molecular phylogenetic and zoospore ultrastructural analyses of Chytridium olla establish the limits of a monophyletic Chytridiales.

Chytridium olla A. Braun, the first described chytrid and an obligate algal parasite, is the type for the genus and thus the foundation of family Chytridiaceae, order Chytridiales, class Chytridiomycetes and phylum Chytridiomycota. Chytridium olla was isolated in coculture with its host, Oedogonium capilliforme. DNA was extracted from the coculture, and 18S, 28S and ITS1-5.8S-ITS2 rDNA were amplified with universal fungal primers. Free swimming zoospores and zoospores in mature sporangia were examined with electron microscopy. Molecular analyses placed C. olla in a clade in Chytridiales with isolates of Chytridium lagenaria and Phlyctochytrium planicorne. Ultrastructural analysis revealed C. olla to have a Group II-type zoospore, previously described for Chytridium lagenaria and Phlyctochytrium planicorne. On the basis of zoospore ultrastructure, family Chytridiaceae is emended to include the type of Chytridium and other species with a Group II-type zoospore, and the new family Chytriomycetaceae is delineated to include members of Chytridiales with a Group I-type zoospore.

Amorosia littoralis gen. sp. nov., a new genus and species name for the scorpinone and caffeine-producing hyphomycete from the littoral zone in The Bahamas.

The new generic and species name Amorosia littoralis gen. sp. nov. is introduced for the conidial dematiaceous hyphomycete isolated from the littoral zone in The Bahamas and reported in 2001 to produce the novel aza-anthraquinone scorpinone, and also caffeine. No satisfactory generic placement was found at the time, but subsequent morphological and molecular investigations reveal that a new generic name is required. The new genus has some similarity to several fungi described in Trichocladium, but differs substantially from the type species of that genus in the form of the conidia and the lack of ornamentation. BLAST studies using the 18S and 28S rDNA gene sequences place the new genus in the Sporormiaceae. In addition to the morphological studies, an ultrastructural examination of the conspicuous porate septa of hyphae showed that they do not belong to a basidiomycete.

A synopsis and re-circumscription of Neurospora (syn. Gelasinospora) based on ultrastructural and 28S rDNA sequence data.

Neurospora and Gelasinospora are traditionally distinguished by the ornamentation pattern of the surface of their ascospores, which are ribbed in the former and pitted in the latter. However, a detailed examination of the morphology of numerous strains of most of the species of both genera confirm the hypothesis that there are not enough criteria to distinguish them from each other. The names Neurospora and Gelasinospora are synonymized and the circumscription of the genus Neurospora amended. Partial sequences of the 28S rDNA gene from 27 species of both genera were analysed to infer their phylogenetic relationships. Species of the two genera were interspersed in the different clades and confirmed that they are genetically very similar. The grouping obtained demonstrates that the morphology of the episporial-layer of the ascospores is an informative phylogenetic character. Two recent isolates from soils of Nigeria and Spain, which could not be classified as any known species of Neurospora are described, illustrated, and recognized as new: N. nigeriensis and N. uniporata spp. nov. A synopsis and key to the 49 species of Neurospora now recognized in the genus is presented, and the new genus Pseudogelasinospora described to accommodate P. amorphoporcata (syn. Gelasinospora amorphoporcata comb. nov.).

Novel processing in a mammalian nuclear 28S pre-rRNA: tissue-specific elimination of an 'intron' bearing a hidden break site.

Splitting and apparent splicing of ribosomal RNA, both previously unknown in vertebrates, were found in rodents of the genus Ctenomys. Instead of being formed by a single molecule of 4.4 kb, 28S rRNA is split in two molecules of 2.6 and 1.8 kb. A hidden break, mapping within a 106 bp 'intron' located in the D6 divergent region, is expressed in mature ribosomes of liver, lung, heart and spleen, as well as in primary fibroblast cultures. Testis-specific processing eliminates the intron and concomitantly the break site, producing non-split 28S rRNA molecules exclusively in this organ. The intron is flanked by two 9 bp direct repeats, revealing the acquisition by insertion of a novel rRNA processing strategy in the evolution of higher organisms.