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1.
Sci Rep ; 12(1): 13035, 2022 07 29.
Article in English | MEDLINE | ID: mdl-35906355

ABSTRACT

Somatic mutations and changes in expression of RAD21 are common in many types of cancer. Moreover, sub-optimal levels of RAD21 expression in early development can result in cohesinopathies. Altered RAD21 levels can result directly from mutations in the RAD21 gene. However, whether DNA variants outside of the RAD21 gene could control its expression and thereby contribute to cancer and developmental disease is unknown. In this study, we searched for genomic variants that modify RAD21expression to determine their potential to contribute to development or cancer by RAD21 dysregulation. We searched 42,953,834 genomic variants for a spatial-eQTL association with the transcription of RAD21. We identified 123 significant associations (FDR < 0.05), which are local (cis) or long-distance (trans) regulators of RAD21 expression. The 123 variants co-regulate a further seven genes (AARD, AKAP11, GRID1, KCNIP4, RCN1, TRIOBP, and USP32), enriched for having Sp2 transcription factor binding sites in their promoter regions. The Sp2 transcription factor and six of the seven genes had previously been associated with cancer onset, progression, and metastasis. Our results suggest that genome-wide variation in non-coding regions impacts on RAD21 transcript levels in addition to other genes, which then could impact on oncogenesis and the process of ubiquitination. This identification of distant co-regulation of oncogenes represents a strategy for discovery of novel genetic regions influencing cancer onset and a potential for diagnostics.


Subject(s)
Neoplasms , Sp2 Transcription Factor , Binding Sites , Cell Cycle Proteins/genetics , DNA-Binding Proteins/genetics , Genetic Variation , Genome , Humans , Neoplasms/genetics , Sp2 Transcription Factor/genetics
2.
Exp Cell Res ; 411(1): 112972, 2022 02 01.
Article in English | MEDLINE | ID: mdl-34914964

ABSTRACT

Calcification of the bicuspid aortic valve (BAV) involves differential expression of various RNA genes, which is achieved through complex regulatory networks that are controlled in part by transcription factors and microRNAs. We previously found that miR-195-5p regulates the osteogenic differentiation of valvular interstitial cells (VICs) by targeting the TGF-ß pathway. However, the transcriptional regulation of miR-195-5p in calcified BAV patients is not yet clear. In this study, stenotic aortic valve tissues from patients with BAVs and tricuspid aortic valves (TAVs) were collected. Candidate transcription factors of miR-195-5p were predicted by bioinformatics analysis and tested in diseased valves and in male porcine VICs. SP2 gene expression and the corresponding protein levels in BAV were significantly lower than those in TAV, and a low SP2 expression level environment in VICs resulted in remarkable increases in RNA expression levels of RUNX2, BMP2, collagen 1, MMP2, and MMP9 and the corresponding proteins. ChIP assays revealed that SP2 directly bound to the transcription promoter region of miR-195-5p. Cotransfection of SP2 shRNA and a miR-195-5p mimic in porcine VICs demonstrated that SP2 repressed SMAD7 expression via miR-195-5p, while knockdown of SP2 increased the mRNA expression of SMAD7 and the corresponding protein and attenuated Smad 2/3 expression. Immunofluorescence staining of diseased valves confirmed that the functional proteins of osteogenesis differentiation, including RUNX2, BMP2, collagen 1, and osteocalcin, were overexpressed in BAVs. In Conclusion, the transcription factor Sp2 is expressed at low levels in VICs from BAV patients, which has a negative impact on miR-195-5p expression by binding its promoter region and partially promotes calcification through a SMAD-dependent pathway.


Subject(s)
Bicuspid Aortic Valve Disease/pathology , Calcinosis/pathology , Osteoblasts/pathology , Smad7 Protein/metabolism , Sp2 Transcription Factor/metabolism , Transforming Growth Factor beta1/metabolism , Tricuspid Valve/pathology , Animals , Bicuspid Aortic Valve Disease/genetics , Bicuspid Aortic Valve Disease/metabolism , Bone Morphogenetic Protein 2/genetics , Bone Morphogenetic Protein 2/metabolism , Calcinosis/genetics , Calcinosis/metabolism , Cell Differentiation , Core Binding Factor Alpha 1 Subunit/genetics , Core Binding Factor Alpha 1 Subunit/metabolism , Female , Humans , Male , MicroRNAs , Middle Aged , Osteoblasts/metabolism , Osteogenesis , Smad7 Protein/genetics , Sp2 Transcription Factor/genetics , Swine , Transforming Growth Factor beta1/genetics , Tricuspid Valve/metabolism
3.
Cell Death Dis ; 12(2): 153, 2021 02 04.
Article in English | MEDLINE | ID: mdl-33542193

ABSTRACT

Studies have found that RNA-binding proteins (RBPs) are dysfunctional and play a significant regulatory role in the development of glioma. Based on The Cancer Genome Atlas database and the previous studies, we selected heterogeneous nuclear ribonucleoprotein (HNRNPD) as the research candidate and sought its downstream targeted genes. In the present study, HNRNPD, linc00707, and specific protein 2 (SP2) were highly expressed, while zinc fingers and homeboxes 2 (ZHX2) and miR-651-3p were remarkedly downregulated in glioma tissues and cells. HNRNPD, linc00707, and SP2 knockdown or ZHX2 and miR-651-3p overexpression suppressed glioma cells proliferation, migration, and invasion and vasculogenic mimicry (VM) formation. Knockdown of HNRNPD increased the stability of ZHX2 mRNA. ZHX2 bound to the promoter region of linc00707 and negatively regulate its expression. Linc00707 could bind with miR-651-3p, while miR-651-3p bound to the 3' untranslated region (3'UTR) of SP2 mRNA to negatively regulate its expression. The transcription factor SP2 directly bound to the promoter regions of the VM formation-related proteins MMP2, MMP9, and VE-cadherin, playing a role in promoting transcription in order to regulate the VM formation ability of glioma cells.


Subject(s)
Brain Neoplasms/metabolism , Glioma/metabolism , Heterogeneous Nuclear Ribonucleoprotein D0/metabolism , Homeodomain Proteins/metabolism , MicroRNAs/metabolism , Molecular Mimicry , Neovascularization, Pathologic , RNA, Long Noncoding/metabolism , Sp2 Transcription Factor/metabolism , Transcription Factors/metabolism , 3' Untranslated Regions , Animals , Binding Sites , Brain Neoplasms/genetics , Brain Neoplasms/pathology , Cell Line, Tumor , Cell Movement , Cell Proliferation , Gene Expression Regulation, Neoplastic , Glioma/genetics , Glioma/pathology , HEK293 Cells , Heterogeneous Nuclear Ribonucleoprotein D0/genetics , Homeodomain Proteins/genetics , Humans , Mice, Nude , MicroRNAs/genetics , Neoplasm Invasiveness , RNA, Long Noncoding/genetics , Signal Transduction , Sp2 Transcription Factor/genetics , Transcription Factors/genetics
4.
Cancer Med ; 9(10): 3592-3603, 2020 05.
Article in English | MEDLINE | ID: mdl-32160655

ABSTRACT

OBJECTIVE: To explore the biological function and molecular mechanism of Sp2 in hepatocellular carcinoma (HCC). METHODS: Tissue microarray immunohistochemistry and western blot were used to study the expression of Sp2 in hepatocellular tissue and adjacent non-neoplastic tissues (ANT). In HCC cell lines, the role of Sp2 was determined by in vitro experiments such as CCK8, clone formation test, Transwell assay, wound-healing assay, and flow cytometry apoptotic analysis, and its possible mechanism was analyzed. RESULTS: Compared with ANT, Sp2 expression in HCC tissues was significantly up-regulated, which was strongly associated with stage of tumor and poor prognosis of patients. TCGA database were further confirmed these results. Besides, functional studies had shown that Sp2 knockdown not only leads to a decrease in cell proliferation and an increase in cell apoptosis but also inhibits the cells' abilities of migration and invasion. Sp2 silencing could inhibit the expression of TRIB3 protein and down-regulate the endoplasmic reticulum stress (ERS) level of HCC. CONCLUSION: Sp2 may play a part in promoting cancer by regulating TRIB3 protein, which may be a factor of prognostic and a potential new therapeutic target for HCC.


Subject(s)
Carcinoma, Hepatocellular/genetics , Cell Cycle Proteins/genetics , Liver Neoplasms/genetics , Protein Serine-Threonine Kinases/antagonists & inhibitors , Repressor Proteins/genetics , Sp2 Transcription Factor/genetics , Apoptosis/genetics , Blotting, Western , Carcinoma, Hepatocellular/metabolism , Carcinoma, Hepatocellular/pathology , Cell Cycle Proteins/metabolism , Cell Line, Tumor , Cell Movement/genetics , Cell Proliferation/genetics , Endoplasmic Reticulum Stress/genetics , Female , Gene Expression Regulation, Neoplastic , Gene Knockdown Techniques , Hep G2 Cells , Humans , Immunohistochemistry , In Vitro Techniques , Liver Neoplasms/metabolism , Liver Neoplasms/pathology , Male , Middle Aged , Neoplasm Invasiveness , Neoplasm Staging , Protein Serine-Threonine Kinases/genetics , Protein Serine-Threonine Kinases/metabolism , Repressor Proteins/metabolism , Sp2 Transcription Factor/metabolism
5.
Development ; 147(4)2020 02 21.
Article in English | MEDLINE | ID: mdl-32001437

ABSTRACT

Cellular and molecular mechanisms underlying the switch from self-amplification of cortical stem cells to neuronal and glial generation are incompletely understood, despite their importance for neural development. Here, we have investigated the role of the transcription factor specificity protein 2 (Sp2) in expansive and neurogenic divisions of the developing cerebral cortex by combining conditional genetic deletion with the mosaic analysis with double markers (MADM) system in mice. We find that loss of Sp2 in progenitors undergoing neurogenic divisions results in prolonged mitosis due to extension of early mitotic stages. This disruption is correlated with depletion of the populations of upper layer neurons in the cortex. In contrast, early cortical neural stem cells proliferate and expand normally in the absence of Sp2. These results indicate a stage-specific requirement for Sp2 in neural stem and progenitor cells, and reveal mechanistic differences between the early expansive and later neurogenic periods of cortical development.This article has an associated 'The people behind the papers' interview.


Subject(s)
Cerebral Cortex/embryology , Neural Stem Cells/cytology , Sp2 Transcription Factor/genetics , Sp2 Transcription Factor/physiology , Alleles , Animals , Cell Differentiation , Cell Division , Cell Lineage , Cell Proliferation , Female , Gene Deletion , Genetic Markers , Male , Mice , Mice, Transgenic , Mitosis , Mutation , Phenotype
6.
Cell Mol Life Sci ; 77(9): 1793-1810, 2020 May.
Article in English | MEDLINE | ID: mdl-31375868

ABSTRACT

The universal nine-amino-acid transactivation domains (9aaTADs) have been identified in numerous transcription activators. Here, we identified the conserved 9aaTAD motif in all nine members of the specificity protein (SP) family. Previously, the Sp1 transcription factor has been defined as a glutamine-rich activator. We showed by amino acid substitutions that the glutamine residues are completely dispensable for 9aaTAD function and are not conserved in the SP family. We described the origin and evolutionary history of 9aaTADs. The 9aaTADs of the ancestral Sp2 gene became inactivated in early chordates. We next discovered that an accumulation of valines in 9aaTADs inactivated their transactivation function and enabled their strict conservation during evolution. Subsequently, in chordates, Sp2 has duplicated and created new paralogs, Sp1, Sp3, and Sp4 (the SP1-4 clade). During chordate evolution, the dormancy of the Sp2 activation domain lasted over 100 million years. The dormant but still intact ancestral Sp2 activation domains allowed diversification of the SP1-4 clade into activators and repressors. By valine substitution in the 9aaTADs, Sp1 and Sp3 regained their original activator function found in ancestral lower metazoan sea sponges. Therefore, the vertebrate SP1-4 clade could include both repressors and activators. Furthermore, we identified secondary 9aaTADs in Sp2 introns present from fish to primates, including humans. In the gibbon genome, introns containing 9aaTADs were used as exons, which turned the Sp2 gene into an activator. Similarly, we identified introns containing 9aaTADs used conditionally as exons in the (SP family-unrelated) transcription factor SREBP1, suggesting that the intron-9aaTAD reservoir is a general phenomenon.


Subject(s)
Evolution, Molecular , Gene Expression Regulation , Introns/genetics , Sp2 Transcription Factor/antagonists & inhibitors , Sp2 Transcription Factor/genetics , Valine/metabolism , Amino Acid Sequence , Animals , Gene Duplication , Humans , Phylogeny , Sequence Homology , Sp2 Transcription Factor/metabolism , Transcriptional Activation , Valine/genetics
7.
BMC Cancer ; 19(1): 746, 2019 Jul 30.
Article in English | MEDLINE | ID: mdl-31362717

ABSTRACT

PURPOSE: Expression of human chorionic gonadotropin beta subunit by cancers is extensively documented, yet regulation of the multiple genes that can code for this protein is poorly understood. The aim of the study was to examine the mechanisms regulating CGB gene expression in ovarian cancer. METHODS: Expression of CGB genes and SP1, SP3, TFAP2A transcription factor genes was evaluated by RT-qPCR. The methylation status of CGB genes promoter regions was examined by methylation-specific PCR. RESULTS: mRNA arising from multiple CGB genes was detected in both ovarian control and malignant tissues. However, expression of CGB3-9 genes was shown to be significantly higher in malignant than healthy ovarian tissues. CGB1 and CGB2 transcripts were shown to be present in 20% of ovarian cancers, but were not detected in any of the control samples. Malignant tissues were characterized by DNA demethylation of CGB promoter regions. In ovarian cancer CGB expression positively correlated with TFAP2A transcripts level and expression of TFAP2A transcription factor was significantly higher in cancer than in control tissues. In contrast SP3 expression level was significantly lower in ovarian tumours than in control ovarian tissue. CONCLUSIONS: In ovarian cancers increased expression of human chorionic gonadotropin beta subunit is associated with demethylation of CGB promoter regions. CGB3-9 expression level strongly correlates with expression of the TFAP2A transcription factor. Presence of mRNA arising from CGB1 and CGB2 genes appears to be a unique feature of a subset of ovarian cancers.


Subject(s)
Chorionic Gonadotropin, beta Subunit, Human/genetics , Gene Expression Regulation, Neoplastic/genetics , Ovarian Neoplasms/genetics , DNA Methylation/genetics , Demethylation , Female , Humans , Neoplasm Grading , Neoplasm Staging , Ovarian Neoplasms/pathology , Ovarian Neoplasms/surgery , Promoter Regions, Genetic/genetics , RNA, Messenger/metabolism , Real-Time Polymerase Chain Reaction , Sp1 Transcription Factor/genetics , Sp2 Transcription Factor/genetics , Transcription Factor AP-2/genetics , Transcription, Genetic
9.
Sci Rep ; 7: 41204, 2017 02 01.
Article in English | MEDLINE | ID: mdl-28145470

ABSTRACT

Although the search for quantitative trait loci for behaviour remains a considerable challenge, the complicated genetic architecture of quantitative traits is beginning to be understood. The current project utilised heterogeneous stock (HS) male mice (n = 580) to investigate the genetic basis for brain weights, activity, anxiety and cognitive phenotypes. We identified 126 single nucleotide polymorphisms (SNPs) in genes involved in regulation of neurotransmitter systems, nerve growth/death and gene expression, and subsequently investigated their associations with changes in behaviour and/or brain weights in our sample. We found significant associations between four SNP-phenotype pairs, after controlling for multiple testing. Specificity protein 2 (Sp2, rs3708840), tryptophan hydroxylase 1 (Tph1, rs262731280) and serotonin receptor 3A (Htr3a, rs50670893) were associated with activity/anxiety behaviours, and microtubule-associated protein 2 (Map2, rs13475902) was associated with cognitive performance. All these genes except for Tph1 were expressed in the brain above the array median, and remained significantly associated with relevant behaviours after controlling for the family structure. Additionally, we found evidence for a correlation between Htr3a expression and activity. We discuss our findings in the light of the advantages and limitations of currently available mouse genetic tools, suggesting further directions for association studies in rodents.


Subject(s)
Behavior, Animal , Brain/metabolism , Genetic Association Studies/methods , Polymorphism, Single Nucleotide , Quantitative Trait Loci , Animals , Gene Expression , Genetic Heterogeneity , Male , Mice , Microtubule-Associated Proteins/genetics , Receptors, Serotonin, 5-HT3/genetics , Sp2 Transcription Factor/genetics , Tryptophan Hydroxylase/genetics
10.
PLoS One ; 11(5): e0155821, 2016.
Article in English | MEDLINE | ID: mdl-27191968

ABSTRACT

Genetic analysis in the IL10-deficient mouse model revealed a modifier locus of experimental inflammatory bowel disease (IBD) on chromosome 18, with the allele of the strain C3H/HeJBir (C3Bir) conferring resistance and the allele of C57BL/6J (B6) conferring susceptibility. Differential Cd14 expression was associated with this background specific susceptibility to intestinal inflammation. Polymorphisms of the Cd14 promoter were found to be likely causative for strain specific expression, and Cd14-knockout mice revealed a protective role of this gene-product in experimental IBD. In this study, luciferase reporter assays confirmed an increased activity of the C3Bir derived Cd14 promoter compared to the one of B6. Promoter truncation experiments and site-directed mutagenesis in both strains resulted in reduced Cd14 promoter activity and confirmed that a central AP1 and the proximal SP1 transcription factor binding sites mediated the basal activity of the Cd14 promoter in the mouse. Moreover, a T to C exchange at position -259 replaced putative STAT1 and CDX1 sites in the Cd14 promoter from B6 by a SP2 site in C3Bir. Ablation of the Sp2 site through truncation was associated with a decreased promoter activity. Site-directed mutagenesis also demonstrated that the inactivation of SP2 led to a substantial loss of promoter activity in C3Bir. Performing electrophoretic mobility shift and supershift assays demonstrated interaction of SP2 with its potential binding site. In addition, retroviral-mediated overexpression of the SP2 transcription factor in primary bone marrow macrophages derived from C3Bir mice caused a significant increase in Cd14 transcription. These data characterized SP2 as important factor responsible for higher Cd14 expression and reduced IBD susceptibility mediated by the C3Bir allele.


Subject(s)
Colitis, Ulcerative/metabolism , Lipopolysaccharide Receptors/metabolism , Sp2 Transcription Factor/metabolism , Alleles , Animals , Cell Line , Colitis, Ulcerative/genetics , Lipopolysaccharide Receptors/genetics , Mice , Promoter Regions, Genetic , Protein Binding , Sp2 Transcription Factor/genetics
11.
Anal Bioanal Chem ; 408(13): 3453-74, 2016 May.
Article in English | MEDLINE | ID: mdl-26942738

ABSTRACT

Quantitative methods for detection of biological molecules are needed more than ever before in the emerging age of "omics" and "big data." Here, we provide an integrated approach for systematic analysis of the "lipidome" in tissue. To test our approach in a biological context, we utilized brain tissue selectively deficient for the transcription factor Specificity Protein 2 (Sp2). Conditional deletion of Sp2 in the mouse cerebral cortex results in developmental deficiencies including disruption of lipid metabolism. Silver (Ag) cationization was implemented for infrared matrix-assisted laser desorption electrospray ionization (IR-MALDESI) to enhance the ion abundances for olefinic lipids, as these have been linked to regulation by Sp2. Combining Ag-doped and conventional IR-MALDESI imaging, this approach was extended to IR-MALDESI imaging of embryonic mouse brains. Further, our imaging technique was combined with bottom-up shotgun proteomic LC-MS/MS analysis and western blot for comparing Sp2 conditional knockout (Sp2-cKO) and wild-type (WT) cortices of tissue sections. This provided an integrated omics dataset which revealed many specific changes to fundamental cellular processes and biosynthetic pathways. In particular, step-specific altered abundances of nucleotides, lipids, and associated proteins were observed in the cerebral cortices of Sp2-cKO embryos.


Subject(s)
Chromatography, Liquid/methods , Lipids/analysis , Mass Spectrometry/methods , Prosencephalon/metabolism , Spectrophotometry, Infrared/methods , Transcriptome , Animals , Mice , Mice, Knockout , Prosencephalon/embryology , Sp2 Transcription Factor/genetics
12.
Cell Physiol Biochem ; 38(3): 1040-54, 2016.
Article in English | MEDLINE | ID: mdl-26937945

ABSTRACT

BACKGROUND/AIMS: Overexpression of cytosolic sulfotransferase 2B1b (SULT2B1b) has been commonly found in colorectal and hepatocellular carcinoma, suggesting that SULT2B1b might act as a potential oncogenic protein. However, its clinical significance and biological role in gastric cancer progression remain largely unknown. METHODS: Expressions of SULT2B1b in clinical gastric cancer (GC) samples were examined using qRT-PCR and Western blot. RESULTS: SULT2B1b was markedly overexpressed in human GC samples, and positively correlated with vessel density and associated with poor clinical features. We also demonstrated that overexpression of SULT2B1b resulted in increased tumor angiogenesis and tumor growth in mouse GC models. In addition, ablation of SULT2B1b in human GC cells lines BGC823 and MKN45 decreased the capability of the cells to recruit endothelial cells. Moreover, depletion of SULT2B1b in GC cells reduced VEGF-A expression by downregulating SP1 and AP2. CONCLUSION: Our results suggested that the SULT2B1b-mediated angiogenic pathway could serve as biomarkers for GC diagnosis and prognosis, and suppressing SULT2B1b-mediated angiogenic signaling might be a promising strategy for developing novel GC treatment.


Subject(s)
Neovascularization, Pathologic/genetics , Neovascularization, Pathologic/metabolism , Stomach Neoplasms/pathology , Sulfotransferases/genetics , Sulfotransferases/metabolism , Adult , Aged , Aged, 80 and over , Animals , Cell Line, Tumor , Female , Gene Expression Regulation, Neoplastic , Humans , Male , Mice , Middle Aged , Neoplasm Transplantation , Prognosis , Sp1 Transcription Factor/genetics , Sp1 Transcription Factor/metabolism , Sp2 Transcription Factor/genetics , Sp2 Transcription Factor/metabolism , Stomach Neoplasms/genetics , Stomach Neoplasms/metabolism , Up-Regulation , Vascular Endothelial Growth Factor A/genetics , Vascular Endothelial Growth Factor A/metabolism
13.
Biochem Biophys Res Commun ; 467(2): 341-7, 2015 Nov 13.
Article in English | MEDLINE | ID: mdl-26431879

ABSTRACT

The addition of O-linked N-acetylglucosamine (O-GlcNAc) on serine or threonine modifies a myriad of proteins and regulates their function, stability and localization. O-GlcNAc modification is common among chromosome-associated proteins, such as transcription factors, suggesting its extensive involvement in gene expression regulation. In this study, we demonstrate the O-GlcNAc status of the Sp family members of transcription factors and the functional impact on their transcriptional activities. We highlight the presence of O-GlcNAc residues in Sp3 and Sp4, but not Sp2, as demonstrated by their enrichment in GlcNAc positive protein fractions and by detection of O-GlcNAc residues on Sp3 and Sp4 co-expressed in Escherichia coli together with O-GlcNAc transferase (OGT) using an O-GlcNAc-specific antibody. Deletion mutants of Sp3 and Sp4 indicate that the majority of O-GlcNAc sites reside in their N-terminal transactivation domain. Overall, using reporter gene assays and co-immunoprecipitations, we demonstrate a functional inhibitory role of O-GlcNAc modifications in Sp3 and Sp4 transcription factors. Thereby, our study strengthens the current notion that O-GlcNAc modification is an important regulator of protein interactome.


Subject(s)
Acetylglucosamine/metabolism , Protein Processing, Post-Translational , Sp3 Transcription Factor/metabolism , Sp4 Transcription Factor/metabolism , Transcription, Genetic , Escherichia coli , Genes, Reporter , HEK293 Cells , HeLa Cells , Humans , Luciferases/genetics , Luciferases/metabolism , N-Acetylglucosaminyltransferases/genetics , N-Acetylglucosaminyltransferases/metabolism , Plasmids/chemistry , Plasmids/metabolism , Protein Structure, Tertiary , Recombinant Proteins/genetics , Recombinant Proteins/metabolism , Serine/metabolism , Signal Transduction , Sp2 Transcription Factor/genetics , Sp2 Transcription Factor/metabolism , Sp3 Transcription Factor/genetics , Sp4 Transcription Factor/genetics , Threonine/metabolism
14.
Virology ; 485: 47-57, 2015 Nov.
Article in English | MEDLINE | ID: mdl-26207799

ABSTRACT

The immediate early (IE) 62 protein is the major varicella-zoster virus (VZV) regulatory factor. Analysis of the VZV genome revealed 40 predicted GC-rich boxes within 36 promoters. We examined effects of ectopic expression of Sp1-Sp4 on IE62- mediated transactivation of three viral promoters. Ectopic expression of Sp3 and Sp4 enhanced IE62 activation of ORF3 and gI promoters while Sp3 reduced IE62 activation of ORF28/29 promoter and VZV DNA replication. Sp2 reduced IE62 transactivation of gI while Sp1 had no significant influence on IE62 activation with any of these viral promoters. Electrophoretic mobility shift assays (EMSA) confirmed binding of Sp1 and Sp3 but not Sp2 and Sp4 to the gI promoter. Sp1-4 bound to IE62 and amino acids 238-258 of IE62 were important for the interaction with Sp3 and Sp4 as well as Sp1. This work shows that Sp family members have differential effects on IE62-mediated transactivation in a promoter-dependent manner.


Subject(s)
Gene Expression Regulation, Viral , Herpesvirus 3, Human/genetics , Immediate-Early Proteins/genetics , Sp1 Transcription Factor/genetics , Sp2 Transcription Factor/genetics , Sp3 Transcription Factor/genetics , Sp4 Transcription Factor/genetics , Trans-Activators/genetics , Viral Envelope Proteins/genetics , Base Composition , Base Sequence , Cell Line, Tumor , Epithelial Cells/metabolism , Epithelial Cells/pathology , Epithelial Cells/virology , Genome, Viral , Herpesvirus 3, Human/metabolism , Host-Pathogen Interactions , Humans , Immediate-Early Proteins/metabolism , Molecular Sequence Data , Open Reading Frames , Promoter Regions, Genetic , Protein Binding , Sp1 Transcription Factor/metabolism , Sp2 Transcription Factor/metabolism , Sp3 Transcription Factor/metabolism , Sp4 Transcription Factor/metabolism , Trans-Activators/metabolism , Transcriptional Activation , Viral Envelope Proteins/metabolism
15.
PLoS Genet ; 11(3): e1005102, 2015 Mar.
Article in English | MEDLINE | ID: mdl-25793500

ABSTRACT

Transcription factors are grouped into families based on sequence similarity within functional domains, particularly DNA-binding domains. The Specificity proteins Sp1, Sp2 and Sp3 are paradigmatic of closely related transcription factors. They share amino-terminal glutamine-rich regions and a conserved carboxy-terminal zinc finger domain that can bind to GC rich motifs in vitro. All three Sp proteins are ubiquitously expressed; yet they carry out unique functions in vivo raising the question of how specificity is achieved. Crucially, it is unknown whether they bind to distinct genomic sites and, if so, how binding site selection is accomplished. In this study, we have examined the genomic binding patterns of Sp1, Sp2 and Sp3 in mouse embryonic fibroblasts by ChIP-seq. Sp1 and Sp3 essentially occupy the same promoters and localize to GC boxes. The genomic binding pattern of Sp2 is different; Sp2 primarily localizes at CCAAT motifs. Consistently, re-expression of Sp2 and Sp3 mutants in corresponding knockout MEFs revealed strikingly different modes of genomic binding site selection. Most significantly, while the zinc fingers dictate genomic binding of Sp3, they are completely dispensable for binding of Sp2. Instead, the glutamine-rich amino-terminal region is sufficient for recruitment of Sp2 to its target promoters in vivo. We have identified the trimeric histone-fold CCAAT box binding transcription factor Nf-y as the major partner for Sp2-chromatin interaction. Nf-y is critical for recruitment of Sp2 to co-occupied regulatory elements. Equally, Sp2 potentiates binding of Nf-y to shared sites indicating the existence of an extensive Sp2-Nf-y interaction network. Our results unveil strikingly different recruitment mechanisms of Sp1/Sp2/Sp3 transcription factor members uncovering an unexpected layer of complexity in their binding to chromatin in vivo.


Subject(s)
Protein Interaction Maps/genetics , Sp1 Transcription Factor/genetics , Sp2 Transcription Factor/genetics , Sp3 Transcription Factor/genetics , Zinc Fingers/genetics , Animals , Binding Sites , CCAAT-Binding Factor/genetics , CCAAT-Binding Factor/metabolism , DNA-Binding Proteins/genetics , Gene Expression Regulation , Genome , Histones/genetics , Mice , Nucleotide Motifs/genetics , Promoter Regions, Genetic , Regulatory Sequences, Nucleic Acid/genetics , Sp1 Transcription Factor/metabolism , Sp2 Transcription Factor/metabolism , Sp3 Transcription Factor/metabolism
16.
Dig Dis Sci ; 59(8): 1743-53, 2014 Aug.
Article in English | MEDLINE | ID: mdl-24623314

ABSTRACT

BACKGROUND: MicroRNAs play important roles in the development and progression of various cancers. Recent studies have shown that miR-638 was downregulated in several tumors; however, its role in gastric cancer (GC) has not been investigated in detail. AIMS: The purpose of this study was to determine the role of miR-638 and to elucidate its regulatory mechanism in GC. METHODS: The expression levels of miR-638 and specificity protein 2 (Sp2) were detected by real-time PCR and Western blotting in GC. After pcDNA6.2-GW/EmGFP-miR-638 vector, miR-638 inhibitor and Sp2-siRNA transfection, the AGS cell proliferation was investigated by MTT assay and cell cycle, and apoptosis was detected using the Annexin V/PI. In addition, the regulation of Sp2 by miR-638 was evaluated by real-time RT-PCR, Western blot and luciferase reporter assays; cyclin D1 expression was measured by Western blotting. RESULTS: The expression of miR-638 is dramatically down-regulated and Sp2 expression is remarkably up-regulated in GC tissues. Luciferase assays revealed that miR-638 inhibited Sp2 expression by targeting the 3'-UTR of Sp2 mRNA. Overexpression of miR-638 and Sp2-siRNA reduced Sp2 expression at both the mRNA and protein levels in vitro, and inhibition of miR-638 increased Sp2 expression. Moreover, we found that miR-638 overexpression and Sp2-siRNA markedly suppressed cell proliferation with decreasing expression of cyclin D1 and inducing G1-phase cell-cycle arrest in vitro; inhibition of miR-638 significantly promoted cell proliferation by increasing expression of cyclin D1 and leading more cells into the S and G2/M phase. CONCLUSIONS: Our results demonstrated that miR-638 suppressed GC cell proliferation by targeting Sp2 with influence on the expression of cyclin D1. We suggest that miR-638 might be a candidate predictor or an anticancer therapeutic target for GC patients.


Subject(s)
MicroRNAs/metabolism , Sp2 Transcription Factor/antagonists & inhibitors , Stomach Neoplasms/genetics , Stomach Neoplasms/metabolism , Cell Line, Tumor , Cell Proliferation , Cyclin D1/antagonists & inhibitors , Cyclin D1/genetics , Cyclin D2/metabolism , Down-Regulation/genetics , Gene Knockdown Techniques , Humans , Sp2 Transcription Factor/genetics , Stomach Neoplasms/pathology
17.
Development ; 140(3): 552-61, 2013 Feb 01.
Article in English | MEDLINE | ID: mdl-23293287

ABSTRACT

Faithful progression through the cell cycle is crucial to the maintenance and developmental potential of stem cells. Here, we demonstrate that neural stem cells (NSCs) and intermediate neural progenitor cells (NPCs) employ a zinc-finger transcription factor specificity protein 2 (Sp2) as a cell cycle regulator in two temporally and spatially distinct progenitor domains. Differential conditional deletion of Sp2 in early embryonic cerebral cortical progenitors, and perinatal olfactory bulb progenitors disrupted transitions through G1, G2 and M phases, whereas DNA synthesis appeared intact. Cell-autonomous function of Sp2 was identified by deletion of Sp2 using mosaic analysis with double markers, which clearly established that conditional Sp2-null NSCs and NPCs are M phase arrested in vivo. Importantly, conditional deletion of Sp2 led to a decline in the generation of NPCs and neurons in the developing and postnatal brains. Our findings implicate Sp2-dependent mechanisms as novel regulators of cell cycle progression, the absence of which disrupts neurogenesis in the embryonic and postnatal brain.


Subject(s)
Cell Cycle , Neural Stem Cells/metabolism , Neurogenesis , Sp2 Transcription Factor/metabolism , Animals , Brain/cytology , Brain/embryology , Brain/metabolism , Cell Count , Cell Proliferation , Crosses, Genetic , Embryo Implantation , Embryo, Mammalian/cytology , Embryo, Mammalian/metabolism , Embryonic Stem Cells/cytology , Embryonic Stem Cells/metabolism , Eye Proteins/genetics , Eye Proteins/metabolism , Female , Genetic Markers , Homeodomain Proteins/genetics , Homeodomain Proteins/metabolism , Homologous Recombination , Intermediate Filament Proteins/genetics , Intermediate Filament Proteins/metabolism , Mice , Mice, Inbred C57BL , Mice, Knockout , Nerve Tissue Proteins/genetics , Nerve Tissue Proteins/metabolism , Nestin , Neural Stem Cells/cytology , Neurons/cytology , Neurons/metabolism , PAX6 Transcription Factor , Paired Box Transcription Factors/genetics , Paired Box Transcription Factors/metabolism , Repressor Proteins/genetics , Repressor Proteins/metabolism , Sp2 Transcription Factor/genetics , Stem Cell Niche , Transplantation Chimera/embryology , Transplantation Chimera/metabolism
18.
Nucleic Acids Res ; 40(16): 7844-57, 2012 Sep.
Article in English | MEDLINE | ID: mdl-22684502

ABSTRACT

The transcription factor Sp2 is essential for early mouse development and for proliferation of mouse embryonic fibroblasts in culture. Yet its mechanisms of action and its target genes are largely unknown. In this study, we have combined RNA interference, in vitro DNA binding, chromatin immunoprecipitation sequencing and global gene-expression profiling to investigate the role of Sp2 for cellular functions, to define target sites and to identify genes regulated by Sp2. We show that Sp2 is important for cellular proliferation that it binds to GC-boxes and occupies proximal promoters of genes essential for vital cellular processes including gene expression, replication, metabolism and signalling. Moreover, we identified important key target genes and cellular pathways that are directly regulated by Sp2. Most significantly, Sp2 binds and activates numerous sequence-specific transcription factor and co-activator genes, and represses the whole battery of cholesterol synthesis genes. Our results establish Sp2 as a sequence-specific regulator of vitally important genes.


Subject(s)
Gene Expression Regulation , Sp2 Transcription Factor/metabolism , Animals , Base Sequence , Binding Sites , Cell Proliferation , DNA/chemistry , DNA/metabolism , Data Mining , Gene Deletion , Gene Expression Profiling , Genome , HEK293 Cells , HeLa Cells , Humans , Mice , Position-Specific Scoring Matrices , Promoter Regions, Genetic , RNA Interference , Sp1 Transcription Factor/metabolism , Sp2 Transcription Factor/antagonists & inhibitors , Sp2 Transcription Factor/genetics
19.
Endocrinology ; 151(6): 2462-73, 2010 Jun.
Article in English | MEDLINE | ID: mdl-20382698

ABSTRACT

MicroRNA-27a (miR-27a) is expressed in MCF-7 breast cancer cells, and antisense miR-27a (as-miR-27a) induces ZBTB10, a specificity protein (Sp) repressor. Both as-miR-27a and overexpression of ZBTB10 decreased Sp1, Sp3, and Sp4 mRNA and protein expression in MCF-7 cells, and this was also accompanied by decreased levels of estrogen receptor alpha (ERalpha) mRNA and protein. RNA interference studies confirmed that basal expression of ERalpha was dependent on Sp1 but not Sp3 or Sp4 in MCF-7 cells. as-miR-27a and overexpression of ZBTB10 inhibited 17beta-estradiol (E2)-induced transactivation in MCF-7 cells, and this was accompanied by decreased binding of Sp and ER proteins in cell lysates to oligonucleotides containing GC-rich motifs or estrogen-responsive elements, respectively. as-miR-27a and overexpression of ZBTB10 arrested MCF-7 cells in G(0)/G(1) and inhibited E2-induced G(0)/G(1) to S phase progression. as-miR-27a induced only a minimal increase in Myt-1, another miR-27a regulated gene, and this was not accompanied by Myt-1-dependent G(2)/M arrest as observed previously in ER-negative MDA-MB-231 breast cancer cells. Thus, miR-27a indirectly regulates E2-responsiveness in MCF-7 cells through suppression of ZBTB10, thereby enhancing expression of ERalpha.


Subject(s)
Breast Neoplasms/metabolism , Estrogen Receptor alpha/metabolism , MicroRNAs/physiology , Blotting, Western , Cell Line, Tumor , Cell Proliferation , Electrophoretic Mobility Shift Assay , Estradiol/pharmacology , Estrogen Receptor alpha/genetics , Female , Flow Cytometry , Gene Expression Regulation, Neoplastic/drug effects , Gene Expression Regulation, Neoplastic/genetics , Humans , MicroRNAs/genetics , Polymerase Chain Reaction , RNA Interference/physiology , Sp1 Transcription Factor/genetics , Sp1 Transcription Factor/metabolism , Sp2 Transcription Factor/genetics , Sp2 Transcription Factor/metabolism , Sp4 Transcription Factor/genetics , Sp4 Transcription Factor/metabolism
20.
J Biol Chem ; 285(6): 4153-4164, 2010 Feb 05.
Article in English | MEDLINE | ID: mdl-19959469

ABSTRACT

The Sp family of transcription factors is required for the expression of cell cycle- and developmentally regulated genes, and the deregulated expression of a handful of family members is associated with human tumorigenesis. Sp2 is a relatively poorly characterized member of the Sp family that, although widely expressed, exhibits little or no DNA binding or transcriptional activity in human and mouse cell lines. To begin to address the role(s) played by Sp2 in early metazoan development we have cloned and characterized Sp2 from zebrafish (Danio rerio). We report that 1) the intron/exon organization and amino acid sequence of zebrafish Sp2 is closely conserved with its mammalian orthologues, 2) zebrafish Sp2 weakly stimulates an Sp-dependent promoter in vitro and associates with the nuclear matrix in a DNA-independent fashion, 3) zebrafish Sp2 is inherited as a maternal transcript, is transcribed in zebrafish embryos and adult tissues, and is required for completion of gastrulation, and 4) zebrafish lines carrying transgenes regulated by the Sp2 promoter recapitulate patterns of endogenous Sp2 expression.


Subject(s)
Embryo, Mammalian/metabolism , Sp2 Transcription Factor/genetics , Zebrafish Proteins/genetics , Zebrafish/genetics , Amino Acid Sequence , Animals , COS Cells , Chlorocebus aethiops , Chromosome Mapping , Embryo, Mammalian/embryology , Female , Gene Expression Regulation, Developmental , Green Fluorescent Proteins/genetics , Green Fluorescent Proteins/metabolism , Humans , In Situ Hybridization , Male , Mice , Microscopy, Fluorescence , Molecular Sequence Data , Phylogeny , Promoter Regions, Genetic/genetics , RNA, Messenger, Stored/genetics , Reverse Transcriptase Polymerase Chain Reaction , Sequence Analysis, DNA , Sp2 Transcription Factor/classification , Sp2 Transcription Factor/metabolism , Synteny , Transcription, Genetic , Zebrafish/embryology , Zebrafish/growth & development , Zebrafish Proteins/metabolism
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