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1.
Mar Biotechnol (NY) ; 26(1): 149-168, 2024 Feb.
Article in English | MEDLINE | ID: mdl-38240954

ABSTRACT

There is clear evidence that the oceans are warming due to anthropogenic climate change, and the northeastern coast of USA contains some of the fastest warming areas. This warming is projected to continue with serious biological and social ramifications for fisheries and aquaculture. One species particularly vulnerable to warming is the Atlantic surfclam (Spisula solidissima). The surfclam is a critically important species, linking marine food webs and supporting a productive, lucrative, and sustainable fishery. The surfclam is also emerging as an attractive candidate for aquaculture diversification, but the warming of shallow coastal farms threatens the expansion of surfclam aquaculture. Little is known about the adaptive potential of surfclams to cope with ocean warming. In this study, the surfclam transcriptome under heat stress was examined. Two groups of surfclams were subjected to heat stress to assess how artificial selection may alter gene expression. One group of clams had been selected for greater heat tolerance (HS) and the other was composed of random control clams (RC). After a 6-h exposure to 16 or 29 °C, gill transcriptome expression profiles of the four temperature/group combinations were determined by RNA sequencing and compared. When surfclams experienced heat stress, they exhibited upregulation of heat shock proteins (HSPs), inhibitors of apoptosis (IAPs), and other stress-response related genes. RC clams differentially expressed 1.7 times more genes than HS clams, yet HS clams had a stronger response of key stress response genes, including HSPs, IAPs, and genes involved with mitigating oxidative stress. The findings imply that the HS clams have a more effective response to heat stress after undergoing the initial selection event due to genetic differences created by the selection, epigenetic memory of the first heat shock, or both. This work provides insights into how surfclams adapt to heat stress and should inform future breeding programs that attempt to breed surfclam for greater heat tolerance, and ultimately bring greater resiliency to shellfish farms.


Subject(s)
Bivalvia , Spisula , Animals , Transcriptome , Heat-Shock Response/genetics , Gene Expression Profiling
2.
Environ Sci Pollut Res Int ; 30(48): 105675-105684, 2023 Oct.
Article in English | MEDLINE | ID: mdl-37715912

ABSTRACT

With the growing interest to exploit mineral resources in the deep-sea, there is the need to establish guidelines and frameworks to support hazard and risk assessment schemes. The present study used a subtidal species of filter-feeding bivalve, the clam Spisula solida, as a proxy to better understand the impacts of sediment plumes in marine organisms under hyperbaric conditions. Four concentrations of suspended sediments (0 g/L, 1 g/L, 2 g/L, and 4 g/L) were used in a mixture with different grain sizes at 4 Bar for 96 h. Functional (filtration rate-FR) and biochemical endpoints (catalase-CAT, glutathione s-transferase-GST, and lipid peroxidation-LPO) were analyzed in the gonads, digestive gland, and gills of S. solida after a 96-h exposure at 4 Bar (the natural limit of the species vertical distribution). The FR showed a decreasing trend with the increasing sediment concentrations (significant effects at 2 and 4 g/L). Additionally, significant changes were observed for some of the tested oxidative stress biomarkers, which were concentration and tissue-dependent, i.e., CAT activity was significantly elevated in gills (1 g/L treatment), and GST was decreased in digestive gland (1 g/L treatment). Overall, the results show that suspended sediments, at 2 and 4 g/L, have negative functional impacts in the bivalve S. solida providing additional insights to improve hazard assessment of deep-sea mining. These findings represent a step forward to ensure the mitigation of the potential negative effects of deep-sea resource exploitation.


Subject(s)
Bivalvia , Spisula , Water Pollutants, Chemical , Animals , Spisula/metabolism , Catalase/metabolism , Oxidative Stress , Digestion , Lipid Peroxidation , Gills/metabolism , Water Pollutants, Chemical/chemistry , Biomarkers/metabolism , Glutathione Transferase/metabolism
3.
J Inorg Biochem ; 246: 112289, 2023 09.
Article in English | MEDLINE | ID: mdl-37354606

ABSTRACT

High energy consumption in the nervous system requires a continuous supply of O2. This role is assisted by proteins from the globin super-family in the nerve cells of invertebrates, where 'nerve hemoglobins' (nHbs) are mainly present at mM concentrations and exhibit oxygen affinities comparable to those of vertebrate myoglobins. To gain insight into the structural bases of this function, we report the crystal structure of nHb from the Atlantic surf clam Spisula solidissima (SsHb), previously suggested to display a bis-histidyl hexa-coordinated heme in the deoxy state, high O2 affinity, and ligand binding cooperativity when assayed in situ. The crystallized protein forms a dimer through packing of a 4-helix bundle involving helices E and F of each subunit. The SsHb 'classic' globin fold displays bis-histidyl (His71(E7) and His103(F8)) hexa-coordination of the heme-Fe atom, with structural and dynamics variations found in the inter-helix hinge regions. Molecular Dynamics simulations of both monomeric and dimeric species in the bis-histidyl hexa-coordinated, deoxy penta-coordinated, and O2-bound hexa-coordinated states reveal distinct structural rearrangements at the interface between subunits in the dimer; these would affect the magnitude of the conformational fluctuations observed between monomer and dimer, and the topology of cavities within the protein matrix and at the interface. These results point to a distal site opening mechanism allowing access of the exogenous ligand to the heme and cast hypotheses on the dimer interface structural and dynamic properties that may support ligand binding cooperativity in dimeric SsHb.


Subject(s)
Spisula , Animals , Spisula/metabolism , Ligands , Hemoglobins/chemistry , Heme/chemistry , Myoglobin , Oxygen/metabolism
4.
Aquat Toxicol ; 253: 106346, 2022 Dec.
Article in English | MEDLINE | ID: mdl-36327686

ABSTRACT

Humans have exhaustively combusted fossil fuels, and released pollutants into the environment, at continuously faster rates resulting in global average temperature increase and seawater pH decrease. Climate change is forecasted to exacerbate the effects of pollutants such as the emergent rare earth elements. Therefore, the objective of this study was to assess the combined effects of rising temperature (Δ = + 4 °C) and decreasing pH (Δ = - 0.4 pH units) on the bioaccumulation and elimination of gadolinium (Gd) in the bioindicator bivalve species Spisula solida (Surf clam). We exposed surf clams to 10 µg L-1 of GdCl3 for seven days, under warming, acidification, and their combination, followed by a depuration phase lasting for another 7 days and investigated the Gd bioaccumulation and oxidative stress-related responses after 1, 3 and 7 days of exposure and the elimination phase. Gadolinium accumulated after just one day with values reaching the highest after 7 days. Gadolinium was not eliminated after 7 days, and elimination is further hampered under climate change scenarios. Warming and acidification, and their interaction did not significantly impact Gd concentration. However, there was a significant interaction on clam's biochemical response. The augmented total antioxidant capacity and lipid peroxidation values show that the significant impacts of Gd on the oxidative stress response are enhanced under warming while the increased superoxide dismutase and catalase values demonstrate the combined impact of Gd, warming & acidification. Ultimately, lipid damage was greater in clams exposed to warming & Gd, which emphasizes the enhanced toxic effects of Gd in a changing ocean.


Subject(s)
Bivalvia , Spisula , Water Pollutants, Chemical , Humans , Animals , Gadolinium/toxicity , Hydrogen-Ion Concentration , Water Pollutants, Chemical/toxicity , Seawater , Climate Change , Oceans and Seas
5.
Chemosphere ; 302: 134850, 2022 Sep.
Article in English | MEDLINE | ID: mdl-35551939

ABSTRACT

Lanthanum (La) is one of the most abundant emergent rare earth elements. Its release into the environment is enhanced by its use in various industrial applications. In the aquatic environment, emerging contaminants are one of the stressors with the ability to compromise the fitness of its inhabitants. Warming and acidification can also affect their resilience and are another consequence of the growing human footprint on the planet. However, from information gathered in the literature, a study on the effects of ocean warming, acidification, and their interaction with La was never carried out. To diminish this gap of knowledge, we explored the effects, combined and as single stressors, of ocean warming, acidification, and La (15 µg L-1) accumulation and elimination on the surf clam (Spisula solida). Specimens were exposed for 7 days and depurated for an additional 7-day period. Furthermore, a robust set of membrane-associated, protein, and antioxidant enzymes and non-enzymatic biomarkers (LPO, HSP, Ub, SOD, CAT, GPx, GST, TAC) were quantified. Lanthanum was bioaccumulated after just one day of exposure, in both control and climate change scenarios. A 7-day depuration phase was insufficient to achieve control values and in a warming scenario, La elimination was more efficient. Biochemical response was triggered, as highlighted by enhanced SOD, CAT, GST, and TAC levels, however as lipoperoxidation was observed it was insufficient to detoxify La and avoid damage. The HSP was largely inhibited in La treatments combined with warming and acidification. Concomitantly, lipoperoxidation was highest in clams exposed to La, warming, and acidification combined. The results highlight the toxic effects of La on this bivalve species and its enhanced potential in a changing world.


Subject(s)
Bivalvia , Spisula , Water Pollutants, Chemical , Animals , Climate Change , Hydrogen-Ion Concentration , Lanthanum/toxicity , Oceans and Seas , Seawater , Superoxide Dismutase , Water Pollutants, Chemical/analysis , Water Pollutants, Chemical/toxicity
6.
Mar Environ Res ; 177: 105602, 2022 May.
Article in English | MEDLINE | ID: mdl-35462229

ABSTRACT

A dynamic energy budget (DEB) model integrating pCO2 was used to describe ocean acidification (OA) effects on Atlantic surfclam, Spisula solidissima, bioenergetics. Effects of elevated pCO2 on ingestion and somatic maintenance costs were simulated, validated, and adapted in the DEB model based upon growth and biological rates acquired during a 12-week laboratory experiment. Temperature and pCO2 were projected for the next 100 years following the intergovernmental panel on climate change representative concentration pathways scenarios (2.6, 6.0, and 8.5) and used as forcing variables to project surfclam growth and reproduction. End-of-century water warming and acidification conditions resulted in simulated faster growth for young surfclams and more energy allocated to reproduction until the beginning of the 22nd century when a reduction in maximum shell length and energy allocated to reproduction was observed for the RCP 8.5 scenario.


Subject(s)
Spisula , Animals , Climate Change , Hydrogen-Ion Concentration , Oceans and Seas , Seawater , Temperature
7.
Molecules ; 26(11)2021 Jun 03.
Article in English | MEDLINE | ID: mdl-34205146

ABSTRACT

The objective of the present study was to investigate the proximate composition, antiradical properties and hepatoprotective activity of three species of shellfish, Corbicula japonica, Spisula sachalinensis, and Anadara broughtonii, from the coastal areas of Far East Russia. Biologically active peptides such as taurine (3.74 g/100 g protein) and ornithine (2.12 g/100 g protein) have been found in the tissues of A. broughtonii. C. japonica contains a high amount of ornithine (5.57 g/100 g protein) and taurine (0.85 g/100 g protein). The maximum DPPH and ABTS radical scavenging activity (36.0 µg ascorbic acid/g protein and 0.68 µmol/Trolox equiv/g protein, respectively) was determined for the tissue of C. japonica. The protein and peptide molecular weight distribution of the shellfish tissue water extracts was investigated using HPLC. It was found that the amount of low molecular weight proteins and peptides were significantly and positively correlated with radical scavenging activity (Pearson's correlation coefficient = 0.96), while the amount of high molecular weight proteins negatively correlated with radical scavenging activity (Pearson's correlation coefficient = -0.86). Hepatoprotective activity, measured by the survival rate of HepG2 hepatocytes after cotreatment with t-BHP, was detected for C. japonica. The highest protection (95.3 ± 2.4%) was achieved by the cold water extract of C. japonica at the concentration of 200 mg/mL. Moreover, oral administration of hot water extract of C. japonica to rats before the treatment with CCl4 exhibited a markedly protective effect by lowering serum levels of ALT and AST, inhibiting the changes in biochemical parameters of functional state of rat liver, including MDA, SOD, GSH and GST.


Subject(s)
Antioxidants/pharmacology , Arcidae/chemistry , Chemical and Drug Induced Liver Injury/prevention & control , Corbicula/chemistry , Hepatocytes/cytology , Shellfish/analysis , Spisula/chemistry , tert-Butylhydroperoxide/adverse effects , Administration, Oral , Animals , Antioxidants/chemistry , Carbon Tetrachloride/adverse effects , Cell Survival , Chromatography, High Pressure Liquid , Disease Models, Animal , Hep G2 Cells , Hepatocytes/drug effects , Humans , Male , Molecular Weight , Ornithine/isolation & purification , Rats , Russia , Shellfish/classification , Taurine/isolation & purification
8.
Mar Pollut Bull ; 161(Pt B): 111740, 2020 Dec.
Article in English | MEDLINE | ID: mdl-33128982

ABSTRACT

In this study, we assessed the Atlantic surfclam (Spisula solidissima) energy budget under different ocean acidification conditions (OA). During 12 weeks, 126 individuals were maintained at three different ρCO2 concentrations. Every two weeks, individuals were sampled for physiological measurements and scope for growth (SFG). In the high ρCO2 treatment, clearance rate decreased and excretion rate increased relative to the low ρCO2 treatment, resulting in reduced SFG. Moreover, oxygen:nitrogen (O:N) excretion ratio dropped, suggesting that a switch in metabolic strategy occurred. The medium ρCO2 treatment had no significant effects upon SFG; however, metabolic loss increased, suggesting a rise in energy expenditure. In addition, a significant increase in food selection efficiency was observed in the medium treatment, which could be a compensatory reaction to the metabolic over-costs. Results showed that surfclams are particularly sensitive to OA; however, the different compensatory mechanisms observed indicate that they are capable of some temporary resilience.


Subject(s)
Spisula , Animals , Homeostasis , Humans , Hydrogen-Ion Concentration , Oceans and Seas , Seawater
9.
PLoS One ; 13(6): e0199212, 2018.
Article in English | MEDLINE | ID: mdl-29902260

ABSTRACT

The Atlantic surfclam (Spisula solidissima) is a commercially important species in North American waters, undergoing biological and ecological shifts. These are attributed, in part, to environmental modifications in its habitat and driven by climate change. Investigation of shell growth patterns, trace elements, and isotopic compositions require an examination of growth lines and increments preserved in biogenic carbonates. However, growth pattern analysis of S. solidissima is challenging due to multiple disturbance lines caused by environmental stress, erosion in umbonal shell regions, and constraints related to sample size and preparation techniques. The present study proposes an alternative method for describing chronology. First, we analyzed growth patterns using growth lines within the shell and hinge. To validate the assumption of annual periodicity of growth line formation, we analyzed the oxygen isotope composition of the outer shell layer of two specimens (46°54'20"N; 56°18'58"W). Maximum δ18Oshell values occurred at the exact same location as internal growth lines in both specimens, confirming that they are formed annually and that growth ceases during winter. Next, we used growth increment width data to build a standardized growth index (SGI) time-series (25-year chronology) for each of the three parts of the shell. Highly significant correlations were found between the three SGI chronologies (p < 0.001; 0.55 < τ < 0.68) of all specimens. Thus, ligament growth lines provide a new method of determining ontogenetic age and growth rate in S. solidissima. In a biogeographic approach, the shell growth performance of S. solidissima in Saint-Pierre and Miquelon was compared to those in other populations along its distribution range in order to place this population in a temporal and regional context.


Subject(s)
Animal Shells/growth & development , Ligaments/growth & development , Oceans and Seas , Spisula/growth & development , Animals , North America , Oxygen Isotopes/analysis , Spisula/chemistry
10.
Article in English | MEDLINE | ID: mdl-29689308

ABSTRACT

Atlantic surfclam populations have significantly declined in state and federal waters from the south shore of Long Island, New York to the Delmarva Peninsula since the early 2000s. Previous studies have demonstrated that surfclams in this geographic range show signs of physiological stress, suggested to be a result of increasing ocean temperatures. In this study, we examined the effect of 2 temperature regimes (19 °C and 23 °C) on surfclam physiology. These temperatures were chosen because they represent maximal (23 °C) and minimal (19 °C) temperatures prevailing in New York clamming areas during summer. Results demonstrated enhanced energy metabolism and significant reductions in filtration rate, scope for growth, and immune functions in clams exposed to the warmer temperature treatment. Although net energy gains remained positive in both treatments under our experimental conditions, the findings suggest that temperature stress is involved in the recent observations of surfclams in poor condition. The impact of elevated temperatures on phytoplankton quantity/quality and other environmental variables in combination with the direct impact on surfclam filtration and metabolic rates could lead to a negative energy balance. While some uncertainties remain about population-scale impacts of overall warming trends, we fear that future increases in temperature may lead to the collapse of the Atlantic surfclam between New York and Virginia, especially within inshore regions.


Subject(s)
Spisula/physiology , Stress, Physiological , Temperature , Animals , Energy Metabolism , Seasons , Spisula/growth & development , Spisula/immunology , Spisula/metabolism
11.
Sci Rep ; 7(1): 6930, 2017 07 31.
Article in English | MEDLINE | ID: mdl-28761142

ABSTRACT

Tandemly repeated DNAs usually constitute significant portions of eukaryotic genomes. In bivalves, however, repetitive DNAs are habitually not widespread. In our search for abundant repetitive DNAs in trough shells, we discovered a novel satellite DNA, SSUsat, which constitutes at least 1.3% of the genome of Spisula subtruncata. As foreseen by the satellite DNA library hypothesis, we confirmed that this satellite DNA is also present in two other Mactridae species, showing a highly conserved nucleotide sequence together with a dramatic diminution in the number of repeats. Predominantly located at the G + C-rich intercalary heterochromatin of S. subtruncata, SSUsat displays several DNA methylation peculiarities. The level of methylation of SSUsat is high (3.38%) in comparison with bivalve standards and triplicates the mean of the S. subtruncata genome (1.13%). Methylation affects not only the cytosines in CpG dinucleotides but also those in CHH and CHG trinucleotides, a feature common in plants but scarce and without any clear known relevance in animals. SSUsat segments enriched in methylated cytosines partly overlap those showing higher sequence conservation. The presence of a chromosome pair showing an accumulation of markedly under-methylated SSUsat monomers additionally indicates that the methylation processes that shape repetitive genome compartments are quite complex.


Subject(s)
DNA Methylation , DNA, Satellite/genetics , Spisula/genetics , Animals , Base Composition , Chromosome Mapping , Heterochromatin/genetics , Sequence Analysis, DNA
12.
J Gerontol A Biol Sci Med Sci ; 70(4): 434-43, 2015 Apr.
Article in English | MEDLINE | ID: mdl-24780585

ABSTRACT

The susceptibility of membrane lipids to peroxidation (peroxidation index [PI]) increases with the double bond content of fatty acids and is inversely correlated to longevity in mammals, birds, and bivalve molluscs. In molluscs, membrane polyunsaturated fatty acids content can be affected by temperature, nutrition, and the individual's age. In this study, we evaluated how these three parameters may alter correlations between PI and longevity. We determined the fatty acid and dimethyl acetal compositions of phospholipids from gill mitochondrial and nonmitochondrial preparations from the short-lived Spisula solidissima (maximum longevity = 37 years) and the long-lived Arctica islandica (maximum longevity = 507 years) exposed to diet abundance and temperature (season) treatments. We also evaluated the effect of individual age on PI in S. solidissima (from 6 to 23 years). The temperature increase from winter to summer (2 to 12°C) coincided with decreases in values of PI, proportions of eicosapentaenoic acid, and dimethyl acetals. Higher microalgae supplementation increased polyunsaturated fatty acids and PI and decreased dimethyl acetals; age did not affect the PI in S. solidissima. Our finding that the PI of A. islandica remained significantly lower than that of S. solidissima in corresponding fractions throughout treatments suggests that longevity-related differences in PI are resilient to environmental conditions.


Subject(s)
Aging/metabolism , Diet , Lipid Peroxidation , Longevity , Mercenaria , Mitochondria/metabolism , Seasons , Spisula , Temperature , Animals , Eicosapentaenoic Acid/metabolism , Fatty Acids, Unsaturated/metabolism , Gills/metabolism , Isobutyrates/metabolism , Membrane Lipids/metabolism , Mercenaria/metabolism , Spisula/metabolism
13.
Cryo Letters ; 35(6): 537-43, 2014.
Article in English | MEDLINE | ID: mdl-25583015

ABSTRACT

BACKGROUND: The signaling of insulin-like growth factor-I (IGF-I) is involved in the development, growth, reproduction and aging of vertebrates. However, few studies have investigated the involvement of IGF-I during states of extreme shock, such as those induced by potently toxic cryoprotective agents (CPAs) or low temperature conditions, in bivalves. OBJECTIVE: We investigated the toxicity of CPAs and the potential relationship between larval viability and the IGF-I receptor (IGF-IR) after treatment with CPAs or freezing in surf clam (Spisula sachalinensis) larvae. MATERIALS AND METHODS: The umbo larvae and different concentrations of CPAs (dimethyl sulfoxide, DMSO; ethylene glycol, EG) were used to investigate the toxicity of CPAs and the vitrification of surf clam larvae. The relationship between larval viability and the IGF-I receptor (IGF-IR) after treatment with CPAs or freezing was investigated using immunoblot analysis. RESULTS: An increase in concentration greater than 4M DMSO was fatal in larvae; however, 5M EG combined with a mixture of CPAs had no harmful effects. Moreover, live larvae immersed in a 5M EG solution remained intact and maintained their normal shape and organs. However, even though the larvae survived the CPA toxicity test, none of the vitrified larvae survived. After immersion into CPAs and vitrification, 97-kDa IGF-IR ß-subunits could be detected in all larvae; but tyrosine phosphorylation of the intracellular ß-subunits was detected only in the control and live groups. CONCLUSION: IGF-IR was activated in the umbo larvae but not in dead surf clam larvae treated with CPA and frozen. Activation of IGF-IR has relevance to the umbo larval stage in live surf clams treated with CPAs.


Subject(s)
Cryoprotective Agents/toxicity , Dimethyl Sulfoxide/toxicity , Ethylene Glycol/toxicity , Receptor, IGF Type 1/metabolism , Spisula/drug effects , Spisula/enzymology , Animals , Cryopreservation , Larva/drug effects , Larva/enzymology , Larva/physiology , Phosphorylation , Spisula/physiology , Vitrification
14.
Aging Cell ; 12(4): 584-92, 2013 Aug.
Article in English | MEDLINE | ID: mdl-23566066

ABSTRACT

The observation of an inverse relationship between lifespan and mitochondrial H2O2 production rate would represent strong evidence for the disputed oxidative stress theory of aging. Studies on this subject using invertebrates are surprisingly lacking, despite their significance in both taxonomic richness and biomass. Bivalve mollusks represent an interesting taxonomic group to challenge this relationship. They are exposed to environmental constraints such as microbial H2S, anoxia/reoxygenation, and temperature variations known to elicit oxidative stress. Their mitochondrial electron transport system is also connected to an alternative oxidase that might improve their ability to modulate reactive oxygen species (ROS) yield. Here, we compared H2O2 production rates in isolated mantle mitochondria between the longest-living metazoan--the bivalve Arctica islandica--and two taxonomically related species of comparable size. In an attempt to test mechanisms previously proposed to account for a reduction of ROS production in long-lived species, we compared oxygen consumption of isolated mitochondria and enzymatic activity of different complexes of the electron transport system in the two species with the greatest difference in longevity. We found that A. islandica mitochondria produced significantly less H2O2 than those of the two short-lived species in nearly all conditions of mitochondrial respiration tested, including forward, reverse, and convergent electron flow. Alternative oxidase activity does not seem to explain these differences. However, our data suggest that reduced complex I and III activity can contribute to the lower ROS production of A. islandica mitochondria, in accordance with previous studies. We further propose that a lower complex II activity could also be involved.


Subject(s)
Hydrogen Peroxide/metabolism , Longevity/physiology , Mitochondria/metabolism , Mya/metabolism , Spisula/metabolism , Animals , Cell Respiration , Electron Transport , Enzyme Activation , Mitochondrial Proteins/metabolism , Mya/physiology , Oxidoreductases/metabolism , Oxygen Consumption , Plant Proteins/metabolism , Reactive Oxygen Species/metabolism , Spisula/physiology , Time Factors
15.
Toxicon ; 65: 41-58, 2013 Apr.
Article in English | MEDLINE | ID: mdl-23369833

ABSTRACT

The periodic occurrence of Paralytic Shellfish Poisoning (PSP) toxins in UK surf clams and the recent move away from biological assays for PSP testing resulted in the need to determine method performance characteristics for the replacement analytical method in this species. With the requirement for laboratory reference materials to aid this validation together with known issues relating to toxin transformation in live clams and homogenised tissue, there was the need to assess the toxin transformation characteristics of PSP toxins in surf clam tissue. Initial work examined the rates of toxin transformation in UK surf clam tissue incubated with toxin standards, showing rapid transformation of N-sulfocarbamoyl toxins with slower transformation of carbamate toxins. Full transformational pathways were determined using a combination of three different analytical methods and confirmed the major expected transformations involving decarbamoylation, with some evidence for additional reaction pathways. Results obtained from the analysis of surf clam and oyster tissues incubated with varying concentrations of toxic Alexandrium algae highlighted expected transformation reactions, although significant differences were observed in the extent of the transformations amongst the range of toxins studied, with less efficient transformation of N-hydroxylated toxins as compared with other carbamate and N-sulfocarbamoyl toxins. Analysis of PSP-toxic incurred oyster, scallop and mussel tissues incubated with variable proportions of surf clam tissue showed large differences in the extent of the transformations. Total conversion of N-sulfocarbamoyl toxins was confirmed at low relative proportions of surf clam tissue in all three species, whereas transformation of carbamate toxins was found to occur only in the presence of higher proportions of surf clam tissue in oysters and mussels in comparison with scallops. Results enabled the production of three laboratory reference materials prepared following incubation of incurred homogenates with optimum proportions of surf clam tissue, resulting in materials containing a large number of PSP toxins. Stability experiments provided good preliminary evidence for the stability of these targeted materials under storage conditions. The work therefore provides both additional information relating to the transformational activity in UK surf clams and highlights a good potential method for the targeted production of reference materials which include a wider range of toxins than normally present in naturally incurred shellfish.


Subject(s)
Food Inspection/methods , Saxitoxin/analysis , Spisula , Animals , Environmental Monitoring/methods , Food Contamination/analysis , Saxitoxin/chemistry , Shellfish Poisoning/prevention & control
16.
RNA Biol ; 10(3): 391-6, 2013 Mar.
Article in English | MEDLINE | ID: mdl-23324608

ABSTRACT

The nucleolinus is a nuclear subcompartment long ago posited to play a role in cell division. In a recent study using surf clam oocytes, cytoplasmic foci containing a nucleolinar protein were shown to later recruit γ-tubulin, identifying them as centrosomal precursors. (1) We now demonstrate the presence of structural RNAs from the nucleolinus in these procentrosomes. They include the well-known but poorly understood rRNA-transcribed spacer regions. In situ hybridization revealed a specific and dynamic association of these structural RNAs with the cell division apparatus that extends through the early stages of meiosis. In addition to their bearing on the debate over the nature of centrosome- and spindle-associated RNAs, the observations also suggest that rRNA spacer regions are not simply waste products to be discarded immediately, but may be functional byproducts that play a role in formation of the cell division apparatus.


Subject(s)
Cell Nucleus Structures/metabolism , Centrosome/physiology , RNA, Ribosomal/genetics , Spisula/genetics , Tubulin/metabolism , Animals , Cell Nucleus Structures/genetics , Cytoplasm/metabolism , DNA, Ribosomal Spacer/genetics , Female , Meiosis , Oocytes/physiology , RNA, Ribosomal/metabolism , Spindle Apparatus/physiology , Spisula/metabolism
17.
J Biomed Opt ; 17(1): 015001, 2012 Jan.
Article in English | MEDLINE | ID: mdl-22352645

ABSTRACT

This study combines microfluidics with optical microablation in a microscopy system that allows for high-throughput manipulation of oocytes, automated media exchange, and long-term oocyte observation. The microfluidic component of the system transports oocytes from an inlet port into multiple flow channels. Within each channel, oocytes are confined against a microfluidic barrier using a steady fluid flow provided by an external computer-controlled syringe pump. This allows for easy media replacement without disturbing the oocyte location. The microfluidic and optical-laser microbeam ablation capabilities of the system were validated using surf clam (Spisula solidissima) oocytes that were immobilized in order to permit ablation of the 5 µm diameter nucleolinus within the oocyte nucleolus. Oocytes were the followed and assayed for polar body ejection.


Subject(s)
Microfluidic Analytical Techniques/methods , Microsurgery/instrumentation , Microsurgery/methods , Oocytes/cytology , Animals , Cell Nucleus , Equipment Design , High-Throughput Screening Assays/instrumentation , High-Throughput Screening Assays/methods , Laser Therapy , Optics and Photonics/instrumentation , Reproducibility of Results , Spisula/cytology
18.
Article in English | MEDLINE | ID: mdl-22356233

ABSTRACT

In 2006, a group of scientists studying centrosomes of Spisula solidissima mollusc oocytes under the leadership of Alliegro (Alliegro, M.C.; Alliegro, M.A.; Palazzo, R.E. Centrosome-associated RNA in surf clam oocytes. Proc. Natl. Acad. Sci. USA 2006, 103(24), 9034-9038) reliably demonstrated the existence of specific RNA in centrosome, called centrosomal RNA (cnRNA). In their first article, five different RNAs (cnRNAs 11, 102, 113, 170, and 184) were described. During the process of full sequencing of the first transcript (cnRNA 11), it was discovered that the transcript contained a conserved structure-a reverse transcriptase domain located together with the most important centrosomal protein, γ-tubulin. In an article published in 2005, we made assumptions about several possible mechanisms for determining the most important functions of centrosomal structures and referred to one of them as a "RNA-dependent mechanism." This idea about participation of hypothetic centrosomal small interference RNA and/or microRNA in the process was made one year prior to the discovery of cnRNA by Alliegro's group. The discovery of specific RNA in a centrosome is indirect evidence of a centrosomal hypothesis of cellular ageing and differentiation. The presence of a reverse transcriptase domain in this type of RNA, together with its uniqueness and specificity, makes the centrosome a place of information storage and reproduction.


Subject(s)
Cell Differentiation/physiology , Cellular Senescence/physiology , Centrosome/chemistry , Models, Biological , RNA/genetics , Spisula/genetics , Animals , Cell Differentiation/genetics , Cellular Senescence/genetics , RNA-Directed DNA Polymerase/genetics , Spisula/enzymology
19.
J Biol Chem ; 287(9): 6702-13, 2012 Feb 24.
Article in English | MEDLINE | ID: mdl-22219192

ABSTRACT

The nucleolinus is a little-known cellular structure, discovered over 150 years ago (Agassiz, L. (1857) Contributions to the Natural History of the United States of America, First Monograph, Part IIL, Little, Brown and Co., Boston) and thought by some investigators in the late 19th to mid-20th century to function in the formation of the centrosomes or spindle. A role for the nucleolinus in formation of the cell division apparatus has recently been confirmed in oocytes of the surf clam, Spisula solidissima (Alliegro, M. A., Henry, J. J., and Alliegro, M. C. (2010) Proc. Natl. Acad. Sci. U.S.A. 107, 13718-13723). However, we know so little about the composition and dynamics of this compartment, it is difficult to construct mechanistic hypotheses or even to be sure that prior reports were describing analogous structures in the cells of mammals, amphibians, plants, and other organisms where it was observed. Surf clam oocytes are an attractive model to approach this problem because the nucleolinus is easily visible by light microscopy, making it accessible by laser microsurgery as well as isolation by common cell fractionation techniques. In this report, we analyze the macromolecular composition of isolated Spisula nucleolini and examine the relationship of this structure to the nucleolus and cell division apparatus. Analysis of nucleolinar RNA and protein revealed a set of molecules that overlaps with but is nevertheless distinct from the nucleolus. The proteins identified were primarily ones involved in nucleic acid metabolism and cell cycle regulation. Monoclonal antibodies generated against isolated nucleolini revealed centrosomal forerunners in the oocyte cytoplasm. Finally, induction of damage to the nucleolinus by laser microsurgery altered the trafficking of α- and γ-tubulin after fertilization. These observations strongly support a role for the nucleolinus in cell division and represent our first clues regarding mechanism.


Subject(s)
Cell Nucleolus/physiology , Cell Nucleolus/ultrastructure , Meiosis/physiology , Oocytes/cytology , Animals , Cell Division/physiology , Centrioles/physiology , Centrosome/physiology , Microscopy, Confocal , Nuclear Proteins/isolation & purification , Nuclear Proteins/metabolism , Oocytes/ultrastructure , RNA, Nuclear/genetics , RNA, Nuclear/isolation & purification , Spindle Apparatus/physiology , Spisula , Tubulin/metabolism
20.
Biomed Khim ; 56(3): 351-9, 2010.
Article in Russian | MEDLINE | ID: mdl-20695214

ABSTRACT

A possibility of adhesion inhibition of Corynebacterium diphtheriae to human buccal epithelium by glycoside hydrolases of marine hydrobiontes was investigated using alpha-galactosidase from marine bacterium Pseudoalteromonas sp. KMM 701, total enzyme preparation and beta-1,3-glucanase from marine fungi Chaetomium, total enzyme preparation and beta-1,3-glucanase from marine mollusk Littorina kurila, and total enzyme preparation from crystalline style of marine mollusk Spisula sachalinensis were used. The enzymes were added to test-tubes containing buccal epithelial cells and/or the toxigenic bacterial strain C. diphtheriae No 1129, v. gravis. All the investigated enzymes were able to abort C. diphtheriae adherence, to human buccal epithelocytes. Inhibition of adhesion was more pronounced in the case of treatment of epithelocytes with highly purified enzymes of marine hydrobiontes in comparison with total enzyme preparations. The significant inhibition of C. diphtheriae adhesion was observed when the enzymes were added to the epithelocytes with the attached microorganisms. The results obtained show that glycoside hydrolases of marine hydrobiontes degrade any carbohydrates expressed on cell surface of bacterium or human buccal epithelocytes, impair unique lectin-carbohydrate interaction and prevent the adhesion.


Subject(s)
Bacterial Adhesion , Corynebacterium diphtheriae/physiology , Glycoside Hydrolases/pharmacology , Mouth Mucosa/drug effects , Animals , Chaetomium/enzymology , Crustacea/enzymology , Epithelial Cells/drug effects , Epithelial Cells/microbiology , Glucan 1,3-beta-Glucosidase/isolation & purification , Glucan 1,3-beta-Glucosidase/pharmacology , Glycoside Hydrolases/isolation & purification , Humans , In Vitro Techniques , Mouth Mucosa/microbiology , Pseudoalteromonas/enzymology , Spisula/enzymology , alpha-Galactosidase/isolation & purification , alpha-Galactosidase/pharmacology
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