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1.
Toxins (Basel) ; 13(1)2021 01 14.
Article in English | MEDLINE | ID: mdl-33466773

ABSTRACT

The global impact of methicillin-resistant Staphylococcus aureus (MRSA) clonal lineages on human and animal health continues, even considering the decreasing MRSA rates in some parts of the world [...].


Subject(s)
Bacterial Toxins , Exotoxins , Methicillin Resistance , Staphylococcaceae/drug effects , Staphylococcaceae/physiology , Staphylococcal Infections/microbiology , Animals , Anti-Bacterial Agents/pharmacology , Drug Resistance, Multiple, Bacterial , Host-Pathogen Interactions , Humans , Methicillin-Resistant Staphylococcus aureus/drug effects , Methicillin-Resistant Staphylococcus aureus/genetics
2.
Adv Appl Microbiol ; 105: 1-50, 2018.
Article in English | MEDLINE | ID: mdl-30342720

ABSTRACT

The Gram-positive genus Macrococcus is composed of eight species that are evolutionarily closely related to species of the Staphylococcus genus. In contrast to Staphylococcus species, species of Macrococcus are generally regarded to be avirulent in their animal hosts. Recent reports on Macrococcus have focused on the presence of novel methicillin resistance genes in Macrococcus caseolyticus and Macrococcus canis, with the discovery of the first plasmid-encoded methicillin resistance gene in clinical Staphylococcus aureus of probable macrococcal origin generating further interest in these organisms. Furthermore, M. caseolyticus has been associated with flavor development in certain fermented foods and its potential as a food bio-preservative has been documented. The potential application of these organisms in food seems at odds with the emerging information regarding antibiotic resistance and is prompting further examination of the potential safety issues associated with such strains, given the European Food Safety Authority framework for the safety evaluation of microorganisms in the food chain. A comprehensive understanding of the genus would also contribute to understanding the evolution of staphylococci in terms of its acquisition of antibiotic resistance and pathogenic potential. In this review, we discuss the current knowledge on Macrococcus with regard to their phenotypic capabilities, genetic diversity, and evolutionary history with Staphylococcus. Comparative genomics of the sequenced Macrococcus species will be discussed, providing insight into their unique metabolic features and the genetic structures carrying methicillin resistance. An in-depth understanding of these antibiotic resistance determinants can open the possibilities for devising better preventative strategies for an unpredictable future.


Subject(s)
Biological Evolution , Food Microbiology , Gram-Positive Bacterial Infections/veterinary , Methicillin Resistance , Staphylococcaceae/genetics , Staphylococcaceae/physiology , Animals , Food Safety , Genes, Bacterial , Genetic Variation , Gram-Positive Bacterial Infections/microbiology , Metabolic Networks and Pathways/genetics , Staphylococcaceae/drug effects , Staphylococcaceae/isolation & purification
4.
Sci Rep ; 7: 43797, 2017 03 08.
Article in English | MEDLINE | ID: mdl-28272476

ABSTRACT

Methicillin-resistant Macrococcus caseolyticus strains from bovine and canine origins were found to carry a novel mecD gene conferring resistance to all classes of ß-lactams including anti-MRSA cephalosporins. Association of ß-lactam resistance with mecD was demonstrated by gene expression in S. aureus and deletion of the mecD-containing island in M. caseolyticus. The mecD gene was located either on an 18,134-bp M. caseolyticus resistance island (McRImecD-1) or a 16,188-bp McRImecD-2. Both islands were integrated at the 3' end of the rpsI gene, carried the mecD operon (mecD-mecR1m-mecIm), and genes for an integrase of the tyrosine recombinase family and a putative virulence-associated protein (virE). Apart from the mecD operon, that shared 66% overall nucleotide identity with the mecB operon, McRImecD islands were unrelated to any mecB-carrying elements or staphylococcal cassette chromosome mec. Only McRImecD-1 that is delimitated at both ends by direct repeats was capable of circular excision. The recombined excision pattern suggests site-specific activity of the integrase and allowed identification of a putative core attachment site. Detection of rpsI-associated integrases in Bacillus and S. aureus reveals a potential for broad-host range dissemination of the novel methicillin resistance gene mecD.


Subject(s)
Genes, Bacterial/genetics , Methicillin Resistance/genetics , Operon , Staphylococcaceae/genetics , Animals , Bacterial Proteins/classification , Bacterial Proteins/genetics , Base Sequence , Cattle , Chromosome Mapping , Chromosomes, Bacterial/genetics , DNA, Bacterial/genetics , Dogs , Host Specificity , Phylogeny , Staphylococcaceae/physiology , Staphylococcal Infections/microbiology , Staphylococcal Infections/veterinary
5.
Biomed Pharmacother ; 87: 46-57, 2017 Mar.
Article in English | MEDLINE | ID: mdl-28040597

ABSTRACT

Marine actinobacteria have been considered as a gold mine with respect to great potential regarding their secondary metabolites. Most of the researches have been conducted on actinobacteria's derived secondary metabolites to examine its pharmacological properties. Actinobacteria have a potential to provide future drugs against crucial diseases, such as drug-resistance bacteria, cancer, a range of viral illnesses, malaria, several infections and inflammations. Although, the mode of action of many bio molecules are still untapped, for a tangible number of compounds by which they interfere with human pathogenesis are reported here with detailed diagrammed illustrations. This knowledge is one of the basic vehicles to be known especially for transforming bio medicinal molecules to medicines. Actinobacteria produce a different kind of biochemical substances with numerous carbon skeletons, which have been found to be the main component interfering with human pathogenesis at different sites. Different diseases have the capability to fight at different sites inside the body can lead to a new wave of increasing the chances to produce targeted medicines.


Subject(s)
Actinobacteria/physiology , Biological Products/pharmacology , Drug Discovery/trends , Animals , Anti-Inflammatory Agents/isolation & purification , Anti-Inflammatory Agents/pharmacology , Anti-Inflammatory Agents/therapeutic use , Antineoplastic Agents/isolation & purification , Antineoplastic Agents/pharmacology , Antineoplastic Agents/therapeutic use , Biological Products/isolation & purification , Biological Products/therapeutic use , Humans , Staphylococcaceae/drug effects , Staphylococcaceae/physiology
6.
Exp Dermatol ; 23(8): 561-7, 2014 Aug.
Article in English | MEDLINE | ID: mdl-24863253

ABSTRACT

Caspase-14, an important proteinase involved in filaggrin catabolism, is mainly active in terminally differentiating keratinocytes, where it is required for the generation of skin natural moisturizing factors (NMFs). Consequently, caspase-14 deficient epidermis is characterized by reduced levels of NMFs such as urocanic acid and 2-pyrrolidone-5-carboxylic acid. Patients suffering from filaggrin deficiency are prone to develop atopic dermatitis, which is accompanied with increased microbial burden. Among several reasons, this effect could be due to a decrease in filaggrin breakdown products. In this study, we found that caspase-14(-/-) mice show enhanced antibacterial response compared to wild-type mice when challenged with bacteria. Therefore, we compared the microbial communities between wild-type and caspase-14(-/-) mice by sequencing of bacterial 16S ribosomal RNA genes. We observed that caspase-14 ablation leads to an increase in bacterial richness and diversity during steady-state conditions. Although both wild-type and caspase-14(-/-) skin were dominated by the Firmicutes phylum, the Staphylococcaceae family was reduced in caspase-14(-/-) mice. Altogether, our data demonstrated that caspase-14 deficiency causes the imbalance of the skin-resident bacterial communities.


Subject(s)
Caspase 14/deficiency , Dysbiosis/microbiology , Microbiota/physiology , Skin/microbiology , Animals , Caspase 14/genetics , Caspase 14/metabolism , Disease Models, Animal , Dysbiosis/metabolism , Dysbiosis/physiopathology , Female , Mice , Mice, Knockout , Skin/metabolism , Skin/physiopathology , Staphylococcaceae/isolation & purification , Staphylococcaceae/physiology , Urocanic Acid/metabolism
7.
J Diabetes Res ; 2014: 153586, 2014.
Article in English | MEDLINE | ID: mdl-24839608

ABSTRACT

Diabetic foot wounds are commonly colonised by taxonomically diverse microbial communities and may additionally be infected with specific pathogens. Since biofilms are demonstrably less susceptible to antimicrobial agents than are planktonic bacteria, and may be present in chronic wounds, there is increasing interest in their aetiological role. In the current investigation, the presence of structured microbial assemblages in chronic diabetic foot wounds is demonstrated using several visualization methods. Debridement samples, collected from the foot wounds of diabetic patients, were histologically sectioned and examined using bright-field, fluorescence, and environmental scanning electron microscopy and assessed by quantitative differential viable counting. All samples (n = 26) harboured bioburdens in excess of 5 log10 CFU/g. Microcolonies were identified in 4/4 samples by all three microscopy methods, although bright-field and fluorescence microscopy were more effective at highlighting putative biofilm morphology than ESEM. Results in this pilot study indicate that bacterial microcolonies and putative biofilm matrix can be visualized in chronic wounds using fluorescence microscopy and ESEM, but also using the simple Gram stain.


Subject(s)
Biofilms/growth & development , Diabetic Foot/complications , Gram-Negative Bacteria/physiology , Gram-Negative Bacterial Infections/diagnosis , Gram-Positive Bacteria/physiology , Gram-Positive Bacterial Infections/diagnosis , Colony Count, Microbial , Debridement , Enterobacteriaceae/growth & development , Enterobacteriaceae/isolation & purification , Enterobacteriaceae/physiology , Enterobacteriaceae/ultrastructure , Gentian Violet/chemistry , Gram-Negative Bacteria/growth & development , Gram-Negative Bacteria/isolation & purification , Gram-Negative Bacteria/ultrastructure , Gram-Negative Bacterial Infections/complications , Gram-Negative Bacterial Infections/microbiology , Gram-Negative Bacterial Infections/pathology , Gram-Positive Bacteria/growth & development , Gram-Positive Bacteria/isolation & purification , Gram-Positive Bacteria/ultrastructure , Gram-Positive Bacterial Infections/complications , Gram-Positive Bacterial Infections/microbiology , Gram-Positive Bacterial Infections/pathology , Humans , In Situ Hybridization, Fluorescence , Microbial Viability , Microscopy, Electron, Scanning , Phenazines/chemistry , Pilot Projects , Staining and Labeling , Staphylococcaceae/growth & development , Staphylococcaceae/isolation & purification , Staphylococcaceae/physiology , Staphylococcaceae/ultrastructure , Streptococcaceae/growth & development , Streptococcaceae/isolation & purification , Streptococcaceae/physiology , Streptococcaceae/ultrastructure
8.
Int J Syst Evol Microbiol ; 62(Pt 3): 545-549, 2012 Mar.
Article in English | MEDLINE | ID: mdl-21498663

ABSTRACT

A novel Gram-stain-positive, white-pigmented, non-motile, non-sporulating, catalase- and oxidase-positive, strictly aerobic coccus, designated strain ZXM223(T), was isolated from a seawater sample collected from the coast of Qingdao, PR China, during a green algal bloom. It grew at pH 6.0-10.5 and 0-25.0% (w/v) NaCl, with optimum growth at pH 8.5 and 3.0% (w/v) NaCl. Growth occurred at 16-42 °C (optimum at 28 °C). The major fatty acids were anteiso-C(15:0) and iso-C(15:0). Menaquinone 6 (MK-6) was the major respiratory quinone. The polar lipids were phosphatidylglycerol, three unidentified phospholipids and two unknown glycolipids. The peptidoglycan type was L-Lys-Gly(5-6.) The genomic DNA G+C content was 43.5 mol%. Phylogenetic analysis of the 16S rRNA gene sequence placed strain ZXM223(T) within the genus Salinicoccus, with sequence similarity of 92.2-97.1% between ZXM223(T) and the type strains of this genus. The closest relatives were Salinicoccus kunmingensis YIM Y15(T), 'S. salitudinis' YIM-C678 and S. alkaliphilus T8(T). The DNA-DNA relatedness between strain ZXM223(T) and S. kunmingensis CGMCC 1.6302(T) and 'S. salitudinis' CGMCC 1.6299 (=YIM-C678) was 37±3 and 30±2%, respectively. The phenotypic, chemotaxonomic and phylogenetic characteristics and low DNA-DNA relatedness support the proposal of a novel species of the genus Salinicoccus, Salinicoccus qingdaonensis sp. nov., with the type strain ZXM223(T) (=LMG 24855(T) =CGMCC 1.8895(T)).


Subject(s)
Seawater/microbiology , Staphylococcaceae/classification , Staphylococcaceae/isolation & purification , Amino Acids/analysis , Bacterial Typing Techniques , Base Composition , China , Chlorophyta/growth & development , Cluster Analysis , DNA, Bacterial/chemistry , DNA, Bacterial/genetics , DNA, Ribosomal/chemistry , DNA, Ribosomal/genetics , Eutrophication , Fatty Acids/analysis , Hydrogen-Ion Concentration , Molecular Sequence Data , Nucleic Acid Hybridization , Peptidoglycan/chemistry , Phospholipids/analysis , Phylogeny , RNA, Ribosomal, 16S/genetics , Sequence Analysis, DNA , Sodium Chloride/metabolism , Staphylococcaceae/genetics , Staphylococcaceae/physiology , Temperature , Vitamin K 2/analysis
9.
J Bacteriol ; 193(13): 3228-40, 2011 Jul.
Article in English | MEDLINE | ID: mdl-21531804

ABSTRACT

Transcriptional regulatory networks are fine-tuned systems that help microorganisms respond to changes in the environment and cell physiological state. We applied the comparative genomics approach implemented in the RegPredict Web server combined with SEED subsystem analysis and available information on known regulatory interactions for regulatory network reconstruction for the human pathogen Staphylococcus aureus and six related species from the family Staphylococcaceae. The resulting reference set of 46 transcription factor regulons contains more than 1,900 binding sites and 2,800 target genes involved in the central metabolism of carbohydrates, amino acids, and fatty acids; respiration; the stress response; metal homeostasis; drug and metal resistance; and virulence. The inferred regulatory network in S. aureus includes ∼320 regulatory interactions between 46 transcription factors and ∼550 candidate target genes comprising 20% of its genome. We predicted ∼170 novel interactions and 24 novel regulons for the control of the central metabolic pathways in S. aureus. The reconstructed regulons are largely variable in the Staphylococcaceae: only 20% of S. aureus regulatory interactions are conserved across all studied genomes. We used a large-scale gene expression data set for S. aureus to assess relationships between the inferred regulons and gene expression patterns. The predicted reference set of regulons is captured within the Staphylococcus collection in the RegPrecise database (http://regprecise.lbl.gov).


Subject(s)
Computational Biology/methods , Gene Expression Regulation, Bacterial , Genomics/methods , Staphylococcaceae/physiology , Transcription, Genetic , Humans , Protein Interaction Mapping , Regulon , Staphylococcaceae/genetics , Staphylococcaceae/metabolism
10.
Int J Syst Evol Microbiol ; 61(Pt 9): 2029-2034, 2011 Sep.
Article in English | MEDLINE | ID: mdl-20851914

ABSTRACT

A novel non-sporulating, non-motile, catalase- and oxidase-positive, strictly aerobic, Gram-positive-staining coccus, strain JSM 077023(T), was isolated from an intertidal sediment sample collected from Naozhou Island in the South China Sea, China. Growth occurred in the presence of 0.5-25 % (w/v) NaCl [optimum, 2-5 % (w/v) NaCl] and at pH 5.5-10.5 (optimum, pH 7.0-8.0) and at 4-45 °C (optimum, 30-35 °C). The major amino acid constituents of the cell wall were alanine, glycine and lysine. The major cellular fatty acids were anteiso-C15:0 and iso-C15:0. The strain contained MK-7 and MK-6 as the predominant respiratory quinones and diphosphatidylglycerol, phosphatidylglycerol and an unidentified phospholipid as the polar lipids. The genomic DNA G+C content of strain JSM 077023(T) was 41.3 mol%. A phylogenetic analysis based on 16S rRNA gene sequence comparisons revealed that strain JSM 077023(T) should be assigned to the genus Jeotgalicoccus and was most closely related to the type strains of Jeotgalicoccus halotolerans (sequence similarity 99.0 %) and Jeotgalicoccus aerolatus (99.0 %), followed by Jeotgalicoccus coquinae (98.6 %) and Jeotgalicoccus psychrophilus (97.4 %). 16S rRNA gene sequence similarities of less than 97 % were observed with other species of the genus Jeotgalicoccus. Levels of DNA-DNA relatedness between strain JSM 077023(T) and the type strains of J. halotolerans, J. aerolatus, J. coquinae and J. psychrophilus ranged from 36.8 to 22.7 %. The combination of phylogenetic analysis, DNA-DNA relatedness values, phenotypic characteristics and chemotaxonomic data supported the suggestion that strain JSM 077023(T) represents a novel species of the genus Jeotgalicoccus, for which the name Jeotgalicoccus nanhaiensis sp. nov. is proposed. The type strain is JSM 077023(T) ( = DSM 23006(T) = KCTC 13714(T)). An emended description of the genus Jeotgalicoccus is also presented.


Subject(s)
Geologic Sediments/microbiology , Staphylococcaceae/classification , Staphylococcaceae/isolation & purification , Aerobiosis , Amino Acids/analysis , Base Composition , Catalase/metabolism , Cell Wall/chemistry , China , Cluster Analysis , DNA, Bacterial/chemistry , DNA, Bacterial/genetics , DNA, Ribosomal/chemistry , DNA, Ribosomal/genetics , Fatty Acids/analysis , Hydrogen-Ion Concentration , Molecular Sequence Data , Oxidoreductases/metabolism , Phospholipids/analysis , Phylogeny , Quinones/analysis , RNA, Ribosomal, 16S/genetics , Sequence Analysis, DNA , Sodium Chloride/metabolism , Spores, Bacterial/cytology , Staphylococcaceae/genetics , Staphylococcaceae/physiology , Temperature
11.
Antonie Van Leeuwenhoek ; 98(3): 351-7, 2010 Oct.
Article in English | MEDLINE | ID: mdl-20449768

ABSTRACT

A novel alkaliphilic and moderate halophilic bacterium, designated strain K164(T), was isolated from Keke Salt Lake in Qinghai, China. The strain grew with 2.0-20.0% (w/v) NaCl, at 4-50 degrees C and pH 6.5-11.5, with an optimum of 8% (w/v) NaCl, 37degrees C and pH 10, respectively. The predominant respiratory quinone was menaquinone 6 (MK-6) and the major polar lipid was phosphatidylethanolamine. The major cellular fatty acids were anteiso-C(15:0) and iso-C(15:0). The genomic DNA G+C content was 50.16 mol. Phylogenetic analysis based on the full-length 16S rRNA gene sequence revealed that strain K164(T) was a member of the genus Salinicoccus. Strain K164(T) showed the highest similarity (98.4%) with Salinicoccus alkaliphilus AS 1.2691(T) and below 97% similarity with other recognized members of the genus in 16S rRNA gene sequence. Level of DNA-DNA relatedness between strain K164(T) and Salinicoccus alkaliphilus AS 1.2691(T) was 20.1%. On the basis of its phenotypic characteristics and the level of DNA-DNA hybridization, strain K164(T) is considered to represent a novel species of the genus Salinicoccus, for which the name Salinicoccus kekensis sp. nov. is proposed. The type strain is K164(T) (=CGMCC 1.10337(T) = DSM 23173(T)).


Subject(s)
Geologic Sediments/microbiology , Salinity , Staphylococcaceae/classification , Staphylococcaceae/isolation & purification , Bacterial Typing Techniques , Base Composition , China , DNA, Ribosomal/analysis , DNA, Ribosomal/genetics , Genes, rRNA , Gram-Positive Cocci , Hydrogen-Ion Concentration , Phylogeny , Polymerase Chain Reaction , RNA, Ribosomal, 16S/analysis , RNA, Ribosomal, 16S/genetics , Sequence Analysis, DNA , Staphylococcaceae/genetics , Staphylococcaceae/physiology , Water Microbiology
12.
Int J Syst Evol Microbiol ; 60(Pt 5): 1023-1026, 2010 May.
Article in English | MEDLINE | ID: mdl-19666813

ABSTRACT

Three strains of an unidentified Gram-stain-variable, fastidious, catalase-negative, capnophilic, non-spore-forming, coccus-shaped bacterium from human wound specimens were characterized by phenotypic and molecular taxonomic methods. Initially, these strains were anaerobic; with repeated culture, they became aerotolerant. Comparative 16S rRNA gene sequencing studies demonstrated that the unknown strains were genealogically homogeneous and constituted a novel subline within the genus Gemella. The unknown bacterium was readily distinguished from other Gemella species by biochemical tests. On the basis of both phylogenetic and phenotypic evidence, it is proposed that the unknown bacterium from clinical specimens be classified as Gemella asaccharolytica sp. nov. The type strain is WAL 1945J(T) (=ATCC BAA-1630(T) =CCUG 57045(T)).


Subject(s)
Gram-Positive Bacterial Infections/microbiology , Staphylococcaceae/classification , Staphylococcaceae/isolation & purification , Wound Infection/microbiology , Bacterial Typing Techniques , DNA, Bacterial/analysis , DNA, Ribosomal/analysis , Genes, rRNA , Humans , Molecular Sequence Data , Phenotype , Phylogeny , RNA, Ribosomal, 16S/genetics , Sequence Analysis, DNA , Species Specificity , Staphylococcaceae/genetics , Staphylococcaceae/physiology
13.
Biologicals ; 38(1): 14-9, 2010 Jan.
Article in English | MEDLINE | ID: mdl-19995680

ABSTRACT

A pathogen inactivation (PI) process has been developed using the frangible anchor linker effector (FRALE) compound S-303. A series of experiments were performed in whole blood (WB) to measure the level of viral and bacterial inactivation. The results showed that 0.2mM S-303 and 2mM glutathione (GSH) inactivated >6.5 logs of HIV, >5.7 logs of Bluetongue virus, >7.0 logs of Yersinia enterocolitica, 4.2 logs of Serratia marcescens, and 7.5 logs of Staphylococcus epidermidis. Recent development for S-303 is focused on optimization of the PI process for red blood cell concentrates (RBC). A series of studies in RBC showed that 0.2mM S-303 and 20mM GSH inactivated approximately 5 logs or greater of Y. enterocolitica, E. coli, S. marcescens, S. aureus, HIV, bovine viral diarrhoea virus, bluetongue virus and human adenovirus 5. In both applications of the S-303 process, in vitro parameters of RBC function and physiology were retained compared to conventional RBC. Results from these studies indicate that S-303 can be applicable for PI of RBC and WB.


Subject(s)
Acridines/pharmacology , Blood Preservation/methods , Blood-Borne Pathogens , Blood/drug effects , Erythrocytes/drug effects , Nitrogen Mustard Compounds/pharmacology , Alkylating Agents/pharmacology , Animals , Blood/microbiology , Blood/virology , Blood-Borne Pathogens/isolation & purification , Cattle , Cells, Cultured , Colony Count, Microbial , Disinfectants/pharmacology , Disinfection/methods , Erythrocytes/microbiology , Erythrocytes/virology , Escherichia coli/drug effects , Escherichia coli/physiology , Feasibility Studies , Humans , Matched-Pair Analysis , Quality Control , Staphylococcaceae/drug effects , Staphylococcaceae/physiology , Yersinia enterocolitica/drug effects , Yersinia enterocolitica/physiology
14.
Int J Syst Evol Microbiol ; 59(Pt 7): 1625-9, 2009 Jul.
Article in English | MEDLINE | ID: mdl-19542134

ABSTRACT

A novel non-sporulating, non-motile, catalase- and oxidase-positive, facultatively anaerobic, moderately halophilic, Gram-positive coccus, designated JSM 076033(T), was isolated from a sea urchin (Hemicentrotus pulcherrimus) collected from the South China Sea. Strain JSM 076033(T) was able to grow in the presence of 0.5-25.0 % (w/v) total salts and at pH 6.0-10.0 and 10-45 degrees C; optimum growth was observed with 5.0-10.0 % (w/v) total salts and at pH 7.0-8.0 and 25-30 degrees C. The major amino acid constituents of the cell wall were glycine, lysine and alanine. The major cellular fatty acids were anteiso-C(15 : 0), iso-C(15 : 0) and anteiso-C(17 : 0). The respiratory quinones were MK-7 (60.7 %) and MK-6 (39.3 %) and the polar lipids were diphosphatidylglycerol, phosphatidylglycerol and an unidentified phospholipid. The DNA G+C content was 40.3 mol%. A phylogenetic analysis based on 16S rRNA gene sequence comparisons revealed that strain JSM 076033(T) should be assigned to the genus Jeotgalicoccus. The sequence similarities between the novel isolate and the type strains of recognized Jeotgalicoccus species were in the range 95.2-97.2 %. The results of the phylogenetic analysis, combined with DNA-DNA relatedness data, phenotypic characteristics and chemotaxonomic information, support the view that strain JSM 076033(T) represents a novel species of the genus Jeotgalicoccus, for which the name Jeotgalicoccus marinus sp. nov. is proposed. The type strain is JSM 076033(T) (=CCTCC AA 207028(T) =DSM 19772(T) =KCTC 13189(T)).


Subject(s)
Sea Urchins/microbiology , Staphylococcaceae/classification , Animals , Bacterial Typing Techniques , Base Composition , China , DNA, Bacterial/analysis , Fatty Acids/analysis , Genes, rRNA , Molecular Sequence Data , Nucleic Acid Hybridization , Phenotype , Phylogeny , RNA, Ribosomal, 16S/genetics , Sequence Analysis, DNA , Species Specificity , Staphylococcaceae/genetics , Staphylococcaceae/isolation & purification , Staphylococcaceae/physiology
15.
Int J Syst Evol Microbiol ; 59(Pt 4): 874-9, 2009 Apr.
Article in English | MEDLINE | ID: mdl-19329623

ABSTRACT

A novel Gram-positive-staining, catalase- and oxidase-positive, non-motile, non-spore-forming coccus, designated YIM-Y21(T), was isolated from a salt mine in Yunnan, south-west China. The strain was moderately halophilic, facultatively alkaliphilic and obligately aerobic. Colonies were white. Growth occurred with 1.0-30.0 % NaCl (optimum, 10.0 % NaCl), at pH 6.0-10.0 (optimum, pH 8.5) and at 5-40 degrees C (optimum, 25 degrees C). The major amino acid constituents of the cell wall were glycine and lysine. The major cellular fatty acids were anteiso-C(15 : 0), anteiso-C(17 : 0) and iso-C(15 : 0). MK-6 was the predominant respiratory quinone, with MK-7 present in minor amounts. The polar lipids consisted of diphosphatidylglycerol, phosphatidylglycerol and an unidentified phospholipid. The DNA G+C content was 46.1 mol%. Phylogenetic analysis based on 16S rRNA gene sequence comparisons revealed that strain YIM-Y21(T) was most closely related to the type strains of the nine recognized species of the genus Salinicoccus. The sequence similarities between the isolate and the type strains of members of this genus were in the range of 90.6-93.8 %, which indicated that strain YIM-Y21(T) is a representative of a novel species within the genus Salinicoccus. Together with the phenotypic characteristics and chemotaxonomic differences, these results support the proposal of a novel species of the genus Salinicoccus, Salinicoccus albus sp. nov., with YIM-Y21(T) (=CCTCC AA 207024(T) =DSM 19776(T) =KCTC 13192(T)) as the type strain.


Subject(s)
Soil Microbiology , Staphylococcaceae/classification , Staphylococcaceae/isolation & purification , Amino Acids/analysis , Bacterial Typing Techniques , Base Composition , Cell Wall/chemistry , China , Cluster Analysis , DNA, Bacterial/chemistry , DNA, Bacterial/genetics , DNA, Ribosomal/chemistry , DNA, Ribosomal/genetics , Fatty Acids/analysis , Hydrogen-Ion Concentration , Molecular Sequence Data , Phylogeny , Quinones/analysis , RNA, Ribosomal, 16S/genetics , Sequence Analysis, DNA , Sequence Homology, Nucleic Acid , Sodium Chloride/metabolism , Staphylococcaceae/genetics , Staphylococcaceae/physiology , Temperature
16.
Article in Russian | MEDLINE | ID: mdl-20095416

ABSTRACT

AIM: To assess the effects of cyclophosphamide (CP), methotrexate (MT), and prednisolone (PS) on the levels of staphylococci, enterococci, Escherichia coli (EC) and lactose-negative enterobacteria (LNEB) in feces of white mice as well as to determine adhesive properties of isolated microorganisms. MATERIALS AND METHODS: Drugs were administered intragastrically during 6 weeks; CP in dose 35.4 mg/kg daily; MT - 2.5 mg/kg over week; PS - 2.5 mg/kg daily; sterile distilled water was administered to controls. Microflora was assessed by common methods; adhesion of microorganisms to group 0 (I) human erythrocytes was determined. RESULTS: Administration of prednisolone leads to increase of isolation rate of staphylococci, CP increased levels of LNEB and EC with suppressed enzymatic activity (P < 0.05). MT decreased isolation rate of typical EC (P < 0.05). MT also decreased degree of adhesion of EC and LNEB, whereas PS enhanced adhesiveness of LNEB, and CP decreased adhesion of staphylococci (P < 0.05). Statistically significant correlation between number and adhesiveness of enterobacteria was established (r = 0.73, P < 0.01). CONCLUSION: Immunodepressors from different groups have non-similar effects on quantitative characteristics of microflora and adhesiveness of isolated opportunistic microorganisms.


Subject(s)
Enterococcus/drug effects , Escherichia coli/drug effects , Immunosuppressive Agents/pharmacology , Intestine, Large/microbiology , Staphylococcaceae/drug effects , Animals , Bacterial Adhesion/drug effects , Colony Count, Microbial , Cyclophosphamide/pharmacology , Enterococcus/isolation & purification , Enterococcus/physiology , Escherichia coli/isolation & purification , Escherichia coli/physiology , Feces/microbiology , Female , Humans , Male , Methotrexate/pharmacology , Mice , Prednisolone/pharmacology , Staphylococcaceae/isolation & purification , Staphylococcaceae/physiology
17.
Int J Syst Evol Microbiol ; 58(Pt 12): 2939-44, 2008 Dec.
Article in English | MEDLINE | ID: mdl-19060087

ABSTRACT

Strains TRF-1(T) and TC-9 were isolated from transfer spikes of two separate bottles containing 0.9 % NaCl (physiological saline) solution used repeatedly to wash wounds in hospital wards, months apart. Phylogenetic analysis of 16S rRNA gene sequences revealed that strains TRF-1(T) and TC-9 formed a distinct branch within the family Bacillaceae most closely related to the members of the genus Jeotgalicoccus. The two strains, with identical 16S rRNA gene sequences, showed sequence similarities of 89.8-93.9 % with species of Jeotgalicoccus, 91.1-91.8 % with species of Salinicoccus and 89.1-89.7 % with species of Staphylococcus. Strains TRF-1(T) and TC-9 are Gram-positive, non-spore-forming and non-motile cocci, with an optimum growth temperature of about 37 degrees C. Strain TRF-1(T) grew optimally in medium containing 3 % (w/v) NaCl (maximum about 14 % NaCl), while strain TC-9 grew optimally in medium with 1 % (w/v) NaCl. Both strains produce a brown pigment when grown in the presence of NaCl. The cell-wall peptidoglycan is of the A3alpha type with a cross-linkage containing the peptide l-Lys-Gly(4)-l-Ser-Gly. The major respiratory quinones are menaquinone 7 (MK-7) and menaquinone 8 (MK-8), the major fatty acids are straight-chain C(14 : 0) and C(16 : 0) (more than 85 % of the total) and the major polar lipid is an unknown aminophospholipid. The DNA G+C content is 33.5 mol%. On the basis of the phylogenetic analysis and physiological and biochemical characteristics, we are of the opinion that strains TRF-1(T) and TC-9 represent a novel species of a new genus, for which we propose the name Nosocomiicoccus ampullae gen. nov., sp. nov. The type strain of Nosocomiicoccus ampullae is strain TRF-1(T) (=LMG 24060(T) =CIP 109506(T)).


Subject(s)
Environmental Microbiology , Sodium Chloride , Staphylococcaceae/classification , Staphylococcaceae/physiology , Fatty Acids/analysis , Molecular Sequence Data , Phenotype , Phylogeny , RNA, Ribosomal, 16S/genetics , Species Specificity , Staphylococcaceae/chemistry , Staphylococcaceae/genetics , Wounds and Injuries/therapy
18.
Int J Syst Evol Microbiol ; 58(Pt 1): 178-83, 2008 Jan.
Article in English | MEDLINE | ID: mdl-18175706

ABSTRACT

A novel moderately halophilic, Gram-positive bacterium, designated strain QW6(T), was isolated from textile industry wastewater in Qom, Iran. Strain QW6(T) was strictly aerobic, non-motile, non-sporulating and oxidase- and catalase-positive. It grew at salinities of 1-25% (w/v) NaCl, showing optimal growth at 7.5-10.0% (w/v). Growth occurred at 5.0-45.0 degrees C and over the pH range 6.5-10.0; growth was optimal at 35 degrees C and pH 7.5. Phylogenetic analysis based on 16S rRNA gene sequence comparisons indicated that strain QW6(T) is a member of the genus Salinicoccus. The organism possessed Lys- and Gly-containing peptidoglycan. Strain QW6(T) had iso-C(15:0) and anteiso-C(15:0) as the predominant fatty acids and MK-6 as the major respiratory lipoquinone. The chemotaxonomic profile of this organism was consistent with its classification in the genus Salinicoccus. The DNA G+C content of strain QW6(T) was 54.4 mol%. On the basis of phenotypic characteristics, 16S rRNA gene sequence analysis and DNA-DNA relatedness of less than 50% to species of the genus Salinicoccus, it is proposed that strain QW6(T) (=DSM 18903(T)=CCM 7448(T)) should be placed in the genus Salinicoccus as the type strain of a novel species, Salinicoccus iranensis sp. nov.


Subject(s)
Sodium Chloride , Staphylococcaceae/classification , Textile Industry , Water Microbiology , Bacterial Typing Techniques , Base Composition , DNA, Bacterial/analysis , Genes, rRNA , Industrial Waste , Iran , Molecular Sequence Data , Nucleic Acid Hybridization , Phenotype , Phylogeny , RNA, Ribosomal, 16S/genetics , Sequence Analysis, DNA , Species Specificity , Staphylococcaceae/genetics , Staphylococcaceae/isolation & purification , Staphylococcaceae/physiology
19.
Extremophiles ; 12(2): 197-203, 2008 Mar.
Article in English | MEDLINE | ID: mdl-18060347

ABSTRACT

A novel pale-yellow-pigmented, moderately halophilic, facultatively alkaliphilic, non-motile, non-spore-forming, catalase- and oxidase-positive, obligately aerobic Gram-positive coccus, strain YIM-C678T was isolated from a saline soil sample collected from a hypersaline habitat in the Qaidam basin, northwest China. The organism grew at 4-37 degrees C and pH 6.0-11.0, with optimum growth at 25 degrees C and pH 8.0. Strain YIM-C678T grew optimally in the presence of 10-12% (w/v) NaCl and growth was observed in 1-25% (w/v) NaCl. The cell wall murein type was L: -Lys-Gly5. Major cellular fatty acids were anteiso-C15:0, iso-C15:0, iso-C16:0 and C16:0. Menaquinone 6 (MK-6) was the major respiratory quinone. The DNA G + C content was 46.5 mol%. Phylogenetic analysis based on 16S rRNA gene sequences indicated that the strain YIM-C678T belonged to the family Staphylococcaceae and was most closely related to the eight described species of the genus Salinicoccus with sequence similarities from 92.2 (S. luteus YIM 70202T) to 97.5% (S. kunmingensis YIM Y15T). The DNA-DNA relatedness between strain YIM-C678T and S. kunmingensis YIM Y15T was 35.4%. Chemotaxonomic data and 16S rRNA gene sequence analysis supported the affiliation of strain YIM-C678T with the genus Salinicoccus. The combination of phylogenetic analysis, phenotypic characteristics, chemotaxonomic differences and DNA-DNA hybridization data supported the view that the bacterium represents a novel species of the genus Salinicoccus, for which the name Salinicoccus salitudinis sp. nov. is proposed, with YIM-C678T (=DSM 17846 = CGMCC 1.6299) as the type strain.


Subject(s)
DNA, Bacterial/genetics , DNA, Ribosomal/genetics , Phylogeny , RNA, Ribosomal, 16S/genetics , Soil Microbiology , Staphylococcaceae/physiology , China , Hydrogen-Ion Concentration , Peptidoglycan/genetics , Peptidoglycan/metabolism , Salinity , Sequence Analysis, DNA , Sodium Chloride/pharmacology , Staphylococcaceae/isolation & purification , Vitamin K 2/analogs & derivatives , Vitamin K 2/metabolism
20.
Int J Syst Evol Microbiol ; 57(Pt 10): 2327-2332, 2007 Oct.
Article in English | MEDLINE | ID: mdl-17911305

ABSTRACT

A novel yellow-pigmented, non-motile, non-sporulating, catalase- and oxidase-positive, obligately aerobic, moderately halophilic, facultatively alkaliphilic Gram-positive coccus, strain YIM Y15(T), was isolated from a brine sample from a salt mine in Yunnan, south-west China. Strain YIM Y15(T) grew in the presence of 0.5-25 % (w/v) NaCl and at pH 6.0-10.0, with optimum growth at 8-10 % (w/v) NaCl and pH 8.0. It grew at 4-45 degrees C, with optimum growth at 37.0 degrees C. The major cellular fatty acids were anteiso-C(15 : 0) and iso-C(15 : 0). Menaquinone 6 (MK-6) was the major respiratory quinone. The cell wall contained Lys and Gly. The DNA G+C content was 46.2 mol%. Phylogenetic analyses based on 16S rRNA gene sequence comparisons revealed that strain YIM Y15(T) was a member of the genus Salinicoccus, with low 16S rRNA gene sequence similarity to the type strains of the five described species of the genus, Salinicoccus alkaliphilus JCM 11311(T) (sequence similarity 96.0 %), Salinicoccus roseus DSM 5351(T) (94.9 %), Salinicoccus jeotgali KCTC 13030(T) (94.8 %), Salinicoccus salsiraiae LMG 22840(T) (94.8 %) and Salinicoccus hispanicus DSM 5352(T) (94.7 %). Together with the phenotypic differences, these results supported the proposal of a novel species of the genus Salinicoccus, Salinicoccus kunmingensis sp. nov., with YIM Y15(T) (=DSM 17847(T) =CGMCC 1.6302(T)) as the type strain.


Subject(s)
Soil Microbiology , Staphylococcaceae/classification , Staphylococcaceae/isolation & purification , Aerobiosis/physiology , Bacterial Typing Techniques , Base Composition , Catalase/metabolism , Cell Wall/chemistry , China , DNA, Bacterial/chemistry , DNA, Bacterial/genetics , DNA, Ribosomal/chemistry , DNA, Ribosomal/genetics , Fatty Acids/analysis , Genes, rRNA , Glycine/analysis , Hydrogen-Ion Concentration , Locomotion/physiology , Lysine/analysis , Molecular Sequence Data , Oxidoreductases/metabolism , Phylogeny , Pigments, Biological/biosynthesis , Quinones/analysis , RNA, Bacterial/genetics , RNA, Ribosomal, 16S/genetics , Sequence Analysis, DNA , Sequence Homology, Nucleic Acid , Sodium Chloride/metabolism , Staphylococcaceae/genetics , Staphylococcaceae/physiology , Temperature
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