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1.
Eur J Clin Microbiol Infect Dis ; 43(5): 999-1002, 2024 May.
Article in English | MEDLINE | ID: mdl-38376633

ABSTRACT

This case report details the management of a 79-year-old male with recurrent methicillin-resistant Staphylococcus capitis bacteremia and endocarditis. The patient's clinical journey encompassed multiple hospital admissions, with challenges in managing endocarditis, pacemaker replacements, and potential cutaneous sources of infection. The treatment regimen included intravenous antibiotic therapy during hospitalization and suppressive antibiotic treatment upon discharge, alongside a decolonization strategy for his scalp lesions.


Subject(s)
Anti-Bacterial Agents , Bacteremia , Endocarditis, Bacterial , Staphylococcus capitis , Humans , Male , Aged , Bacteremia/drug therapy , Bacteremia/microbiology , Anti-Bacterial Agents/therapeutic use , Endocarditis, Bacterial/drug therapy , Endocarditis, Bacterial/microbiology , Endocarditis, Bacterial/diagnosis , Staphylococcus capitis/drug effects , Staphylococcus capitis/isolation & purification , Staphylococcus capitis/genetics , Staphylococcal Infections/drug therapy , Staphylococcal Infections/microbiology , Staphylococcal Infections/diagnosis , Recurrence
2.
Sci Rep ; 10(1): 22389, 2020 12 28.
Article in English | MEDLINE | ID: mdl-33372186

ABSTRACT

Staphylococcus capitis is a coagulase-negative staphylococcus that has been described primarily as causing bloodstream infections in neonatal intensive care units (NICUs), but has also recently been described in prosthetic joint infections (PJIs). The multidrug-resistant S. capitis subsp. urealyticus clone NRCS-A, comprising three sublineages, is prevalent in NICUs across the world, but its impact on other patient groups such as those suffering from PJIs or among adults planned for arthroplasty is unknown. Genome sequencing and subsequent analysis were performed on a Swedish collection of PJI isolates (n = 21), nasal commensals from patients planned to undergo arthroplasty (n = 20), NICU blood isolates (n = 9), operating theatre air isolates (n = 4), and reference strains (n = 2), in conjunction with an international strain collection (n = 248). The NRCS-A Outbreak sublineage containing the composite type V SCCmec-SCCcad/ars/cop element was present in PJIs across three Swedish hospitals. However, it was not found among nasal carrier strains, where the less virulent S. capitis subsp. capitis was most prevalent. The presence of the NRCS-A Outbreak clone in adult patients with PJIs demonstrates that dissemination occurs beyond NICUs. As this clone has several properties which facilitate invasive infections in patients with medical implants or immunosuppression, such as biofilm forming ability and multidrug resistance including heterogeneous glycopeptide-intermediate susceptibility, further research is needed to understand the reservoirs and distribution of this hospital-associated pathogen.


Subject(s)
Biofilms , Disease Outbreaks , Drug Resistance, Multiple, Bacterial/genetics , Joint Prosthesis/microbiology , Staphylococcal Infections , Staphylococcus capitis/isolation & purification , Staphylococcus capitis/physiology , Adult , Arthroplasty , Female , Humans , Male , Staphylococcal Infections/epidemiology , Staphylococcal Infections/genetics , Sweden/epidemiology
3.
Eur J Clin Microbiol Infect Dis ; 39(11): 2185-2194, 2020 Nov.
Article in English | MEDLINE | ID: mdl-32519215

ABSTRACT

To increase the knowledge about S. capitis in the neonatal setting, we conducted a nationwide 3-month survey in 38 neonatal intensive care units (NICUs) covering 56.6% of French NICU beds. We demonstrated 14.2% of S. capitis BSI (S.capBSI) among nosocomial BSIs. S.capBSI incidence rate was 0.59 per 1000 patient-days. A total of 55.0% of the S.capBSIs were late onset catheter-related BSIs. The S. capitis strains infected preterm babies (median gestational age 26 weeks, median birth weight 855 g). They were resistant to methicillin and aminoglycosides and belonged to the NRCS-A clone. Evolution was favorable in all but one case, following vancomycin treatment.


Subject(s)
Sepsis/epidemiology , Staphylococcal Infections/epidemiology , Staphylococcus capitis/isolation & purification , Anti-Bacterial Agents/pharmacology , Anti-Bacterial Agents/therapeutic use , Catheter-Related Infections/drug therapy , Catheter-Related Infections/epidemiology , Catheter-Related Infections/etiology , Drug Resistance, Multiple, Bacterial , Female , France/epidemiology , Humans , Infant, Newborn , Infant, Premature , Intensive Care Units, Neonatal , Male , Sepsis/drug therapy , Sepsis/etiology , Staphylococcal Infections/drug therapy , Staphylococcal Infections/etiology , Staphylococcus capitis/drug effects
4.
Nat Microbiol ; 5(5): 735-745, 2020 05.
Article in English | MEDLINE | ID: mdl-32341568

ABSTRACT

The multidrug-resistant Staphylococcus capitis NRCS-A clone is responsible for sepsis in preterm infants in neonatal intensive care units (NICUs) worldwide. Here, to retrace the spread of this clone and to identify drivers of its specific success, we investigated a representative collection of 250 S. capitis isolates from adults and newborns. Bayesian analyses confirmed the spread of the NRCS-A clone and enabled us to date its emergence in the late 1960s and its expansion during the 1980s, coinciding with the establishment of NICUs and the increasing use of vancomycin in these units, respectively. This dynamic was accompanied by the acquisition of mutations in antimicrobial resistance- and bacteriocin-encoding genes. Furthermore, combined statistical tools and a genome-wide association study convergently point to vancomycin resistance as a major driver of NRCS-A success. We also identified another S. capitis subclade (alpha clade) that emerged independently, showing parallel evolution towards NICU specialization and non-susceptibility to vancomycin, indicating convergent evolution in NICU-associated pathogens. These findings illustrate how the broad use of antibiotics can repeatedly lead initially commensal drug-susceptible bacteria to evolve into multidrug-resistant clones that are able to successfully spread worldwide and become pathogenic for highly vulnerable patients.


Subject(s)
Anti-Bacterial Agents/pharmacology , Drug Resistance, Multiple, Bacterial/drug effects , Drug Resistance, Multiple, Bacterial/genetics , Neonatal Sepsis/microbiology , Staphylococcus capitis/drug effects , Staphylococcus capitis/genetics , Adult , Bayes Theorem , France , Genes, Bacterial/genetics , Genome, Bacterial , Genome-Wide Association Study , Genotype , Humans , Infant , Infant, Newborn , Intensive Care Units, Neonatal , Microbial Sensitivity Tests , Mutation , Phenotype , Polymorphism, Single Nucleotide , Recombination, Genetic , Staphylococcal Infections/microbiology , Staphylococcus capitis/isolation & purification , Staphylococcus capitis/pathogenicity , Vancomycin/therapeutic use
5.
Balkan Med J ; 37(4): 215-221, 2020 06 01.
Article in English | MEDLINE | ID: mdl-32270947

ABSTRACT

Background: Coagulase-negative staphylococci, which belong to the normal microbiota of the skin and mucous membranes, are opportunistic pathogens. sasX, a newly described protein, is thought to play an important role in nasal colonization and methicillin-resistant Staphylococcus aureus virulence, and it may be acquired from coagulase-negative staphylococci by horizontal gene transfer. It has been considered that understanding the function of sasX gene may help clarify the relevance of the different adhesion mechanisms in the pathogenesis of infections associated with biofilm. Aims: To investigate the sasX gene presence, staphylococcal cassette chromosome mec types, and antimicrobial resistance patterns of invasive and noninvasive coagulase-negative staphylococci isolates. Study Design: Cross-sectional study. Methods: The study included a total of 180 coagulase-negative staphylococci strains. Non-invasive isolates (n=91) were obtained from the hands of healthy volunteers who do not work at the hospital (n=30), the nasal vestibule of healthy volunteer hospital workers (n=26), and central venous catheter (n=35). Invasive isolates (n=89) were isolated from peripheral blood cultures of inpatients who do not have catheters. All isolates were identified by conventional microbiological methods, automated systems, and, if needed, with matrix-assisted laser desorption/ionization-time of flight. Staphylococcal cassette chromosome mec typing, sasX and mec gene detection, antibiotic susceptibility, and sasX gene sequence analysis were performed. Results: Peripheral blood, central venous catheter colonization, and nasal vestibule isolates were positive for the sasX gene, whereas hand isolates were negative. sasX gene was present in 17 isolates, and no statistical significance was found between invasive and noninvasive isolates (p=0.173). Sequence analysis of the sasX genes showed high homology to related proteins of Staphylococcus phage SPbeta-like and Staphylococcus epidermidis RP62A. staphylococcal cassette chromosome mec type V was the most prevalent regardless of species. staphylococcal cassette chromosome mec type II was more frequent in invasive isolates and found to be statistically important for invasive and noninvasive S. epidermidis isolates (p=0.029). Staphylococcus haemolyticus isolates had the overall highest resistance rates. Resistance to ciprofloxacin, trimethoprim-sulfamethoxazole, and erythromycin was found to be higher in isolates from catheter and blood culture. Staphylococcus hominis isolates had the highest rate for inducible clindamycin resistance. None of the isolates were resistant to vancomycin, teicoplanin, and linezolid. Conclusion: The sasX gene is detected in 9.44% of the isolates. There is no statistical difference between the sasX-positive and -negative isolates in terms of antibacterial resistance and the presence of sasX and SCCmec types. Further studies about the role of sasX at virulence in coagulase-negative staphylococci, especially from clinical samples such as tracheal aspirate and abscess isolates, and distribution of staphylococcal cassette chromosome mec types are needed.


Subject(s)
Coagulase/analysis , Staphylococcus/genetics , Staphylococcus/metabolism , Coagulase/blood , Coagulase/metabolism , Cross-Sectional Studies , Humans , Microbial Sensitivity Tests/methods , Staphylococcus/isolation & purification , Staphylococcus capitis/genetics , Staphylococcus capitis/isolation & purification , Staphylococcus epidermidis/genetics , Staphylococcus epidermidis/isolation & purification , Staphylococcus haemolyticus/genetics , Staphylococcus haemolyticus/isolation & purification , Staphylococcus hominis/genetics , Staphylococcus hominis/isolation & purification , Staphylococcus lugdunensis/genetics , Staphylococcus lugdunensis/isolation & purification , Staphylococcus saprophyticus/genetics , Staphylococcus saprophyticus/isolation & purification
6.
J Invest Dermatol ; 140(8): 1619-1628.e2, 2020 08.
Article in English | MEDLINE | ID: mdl-31981578

ABSTRACT

The microbiome represents a vast resource for drug discovery, as its members engage in constant conflict to outcompete one another by deploying diverse strategies for survival. Cutibacterium acnes is one of the most common bacterial species on human skin and can promote the common disease acne vulgaris. By employing a combined strategy of functional screening, genetics, and proteomics we discovered a strain of Staphylococcus capitis (S. capitis E12) that selectively inhibited growth of C. acnes with potency greater than antibiotics commonly used in the treatment of acne. Antimicrobial peptides secreted from S. capitis E12 were identified as four distinct phenol-soluble modulins acting synergistically. These peptides were not toxic to human keratinocytes and the S. capitis extract did not kill other commensal skin bacteria but was effective against C. acnes on pig skin and on mice. Overall, these data show how a member of the human skin microbiome can be useful as a biotherapy for acne vulgaris.


Subject(s)
Acne Vulgaris/therapy , Biological Therapy/methods , Skin/microbiology , Staphylococcus capitis/immunology , Symbiosis/immunology , Acne Vulgaris/immunology , Acne Vulgaris/microbiology , Adult , Animals , Female , Humans , Keratinocytes/immunology , Male , Mice , Microbial Sensitivity Tests , Pore Forming Cytotoxic Proteins/isolation & purification , Pore Forming Cytotoxic Proteins/metabolism , Pore Forming Cytotoxic Proteins/toxicity , Primary Cell Culture , Propionibacterium acnes/immunology , Propionibacterium acnes/pathogenicity , Skin/immunology , Staphylococcus capitis/isolation & purification , Staphylococcus capitis/metabolism , Swine , Toxicity Tests , Young Adult
7.
Microb Drug Resist ; 26(3): 251-260, 2020 Mar.
Article in English | MEDLINE | ID: mdl-31549905

ABSTRACT

This study compared changes in antimicrobial susceptibilities and molecular characteristics of coagulase-negative staphylococci (CNS) between the year 2000 and the year 2014-2015 to evaluate the policy of separating drug prescribing and dispensing in Korea. We obtained 68 CNS clinical isolates from two tertiary general hospitals before (the year 2000; n = 25) and after (the year 2014 - 2015; n = 43) implementation of the separation. Isolates were identified as Staphylococcus capitis, Staphylococcus epidermidis, Staphylococcus haemolyticus, Staphylococcus hominis, Staphylococcus saprophyticus, and Staphylococcus warneri. When minimal inhibitory concentrations of 14 antimicrobials were applied to isolates, resistance rates to gentamicin and oxacillin in 2000 were significantly higher than in 2014-2015 (p < 0.05). Fifty-seven isolates were methicillin-resistant CNS (MR-CNS), 42 of which were also multidrug resistant; overall, multidrug resistance decreased from 72% in the year 2000 to 55.8% in 2014-2015. Staphylococcal cassette chromosome mec (SCCmec) type III was the dominant type of MR-CNS in the year 2000, while SCCmec type IV was the dominant type in 2014-2015. Twenty-five sequence types (STs) were identified; ST2 appeared most frequently in both periods. After 15 years of implementation of this policy, multidrug resistance as well as methicillin and gentamicin resistance in CNS decreased, but not resistance to other antibiotics. Long-term surveillance at both genotypic and phenotypic levels of various species is necessary for further evaluation of this policy.


Subject(s)
Anti-Bacterial Agents/pharmacology , Drug Prescriptions/statistics & numerical data , Drug Resistance, Multiple, Bacterial/genetics , Staphylococcal Infections/epidemiology , Staphylococcus epidermidis/genetics , Staphylococcus haemolyticus/genetics , Bacterial Proteins/genetics , Bacterial Proteins/metabolism , Coagulase/deficiency , Coagulase/genetics , Gene Expression , Gentamicins/pharmacology , Humans , Legislation, Drug , Microbial Sensitivity Tests , Oxacillin/pharmacology , Phylogeny , Republic of Korea/epidemiology , Staphylococcal Infections/drug therapy , Staphylococcal Infections/microbiology , Staphylococcus , Staphylococcus capitis/classification , Staphylococcus capitis/drug effects , Staphylococcus capitis/genetics , Staphylococcus capitis/isolation & purification , Staphylococcus epidermidis/classification , Staphylococcus epidermidis/drug effects , Staphylococcus epidermidis/isolation & purification , Staphylococcus haemolyticus/classification , Staphylococcus haemolyticus/drug effects , Staphylococcus haemolyticus/isolation & purification , Staphylococcus hominis/classification , Staphylococcus hominis/drug effects , Staphylococcus hominis/genetics , Staphylococcus hominis/isolation & purification , Staphylococcus saprophyticus , Tertiary Care Centers
8.
Perit Dial Int ; 39(6): 568-570, 2019.
Article in English | MEDLINE | ID: mdl-31690701

ABSTRACT

Bacterial peritonitis continues to be a significant cause of morbidity and mortality in patients undergoing peritoneal dialysis. Episodes of peritonitis due to coagulase-negative staphylococci (CNS) are especially prone to relapse or repeat, often culminating in catheter removal and technique failure. This pattern is thought to be associated with the production of a biofilm that offers protection against antimicrobials and the host defense systems. We report the successful eradication of repeated episodes of CNS peritonitis using an aggressive multipronged therapeutic approach combining several antibiotics and a thrombolytic agent.


Subject(s)
Anti-Bacterial Agents/therapeutic use , Catheter-Related Infections/therapy , Coagulase/analysis , Peritoneal Dialysis/adverse effects , Peritonitis/therapy , Staphylococcal Infections/therapy , Staphylococcus capitis/isolation & purification , Aged , Aged, 80 and over , Catheter-Related Infections/microbiology , Catheters, Indwelling/adverse effects , Catheters, Indwelling/microbiology , Device Removal/methods , Female , Humans , Kidney Failure, Chronic/therapy , Male , Middle Aged , Peritonitis/microbiology , Staphylococcal Infections/microbiology , Staphylococcus capitis/enzymology
9.
Article in English | MEDLINE | ID: mdl-31636900

ABSTRACT

Background: The methicillin-resistant clone Staphylococcus capitis NRCS-A, involved in sepsis in neonatal intensive care units (NICUs) worldwide, is able to persist and spread in NICUs, suggesting the presence of reservoirs inside each setting. The purpose of the present study was to identify these reservoirs and to investigate the cycle of transmission of NRCS-A in one NICU. Methods: In a single institution study, NRCS-A was sought in 106 consecutive vaginal samples of pregnant women to identify a potential source of NRCS-A importation into the NICU. Additionally NICU caregivers and environmental including incubators were tested to identify putative secondary reservoirs. Finally, the efficacy of disinfection procedure in the elimination of NRCS-A from incubators was evaluated. Results: No S. capitis was isolated from vaginal samples of pregnant women. Three of the 21 tested caregivers (14%) carried S. capitis on their hands, but none remain positive after a five-day wash-out period outside NICU. Moreover, the clone NRCS-A persisted during six consecutive weeks in the NICU environment, but none of the sampled sites was constantly contaminated. Finally in our before/after disinfection study, all of 16 incubators were colonized before disinfection and 10 (62%) incubators remained colonized with NRCS-A after the disinfection procedure. Conclusions: The partial ineffectiveness of incubators' disinfection procedures is responsible for persistence of NRCS-A inside a NICU, and the passive hand contamination of caregivers could be involved in the inter-patient transmission of S. capitis.


Subject(s)
Incubators, Infant/microbiology , Methicillin Resistance , Sepsis/microbiology , Staphylococcal Infections/diagnosis , Staphylococcus capitis/isolation & purification , Vagina/microbiology , Child , Disease Reservoirs/classification , Disinfection/methods , Equipment Contamination/statistics & numerical data , Female , Humans , Infant, Newborn , Intensive Care Units, Neonatal , Pregnancy
10.
Transfusion ; 59(12): 3674-3682, 2019 12.
Article in English | MEDLINE | ID: mdl-31608457

ABSTRACT

BACKGROUND: Whole blood (WB) is held at room temperature for not more than 24 hours before blood component manufacturing. The ability of several culture collection, skin-derived, and transfusion-related bacteria to survive in WB stored at 22 ± 2°C for 24 hours was investigated in this study. STUDY DESIGN AND METHODS: Twenty-one bacteria of the species Staphylococcus epidermidis, Staphylococcus aureus, Staphylococcus capitis, Streptococcus agalactiae, Serratia liquefaciens, Serratia marcescens, Klebsiella pneumoniae, Escherichia coli, and Yersinia enterocolitica were inoculated into 7-mL aliquots of WB at a concentration of 500 colony-forming units (CFU)/mL. Spiked WB was stored aerobically at 22 ± 2°C, and bacterial viability and growth were monitored at 3, 8, and 24 hours during WB storage. Bacteria that showed decreased viability during WB incubation were further characterized for their sensitivity to plasma factors and neutrophil killing. RESULTS: There were three different scenarios for bacterial behavior during the hold of WB at 22 ± 2°C. Five bacteria proliferated (p < 0.03), 11 remained viable or showed low proliferation, and a third group of five bacteria had decreased or lost viability (p < 0.01). Three of the latter five bacteria were plasma-sensitive while the other two were plasma-resistant but susceptible to neutrophil killing (p = 0.01). CONCLUSIONS: The bactericidal activity of WB can be the result of plasma sensitivity or neutrophil killing. Bacteria with a starting inoculum of 500 CFU/mL, and able to resist WB immune factors, can proliferate to clinically significant levels posing a potential safety risk to transfusion patients. Results of this pilot study should be validated under standard WB collection and storage conditions.


Subject(s)
Blood Preservation/methods , Neutrophils/physiology , Plasma/microbiology , Blood Platelets/microbiology , Erythrocytes/microbiology , Escherichia coli/isolation & purification , Humans , Klebsiella pneumoniae/isolation & purification , Leukocytes/microbiology , Microbial Viability , Serratia liquefaciens/isolation & purification , Serratia marcescens/isolation & purification , Staphylococcus aureus/isolation & purification , Staphylococcus capitis/isolation & purification , Staphylococcus epidermidis/isolation & purification , Streptococcus agalactiae/isolation & purification , Yersinia enterocolitica/isolation & purification
11.
Eur J Clin Microbiol Infect Dis ; 38(11): 2069-2075, 2019 Nov.
Article in English | MEDLINE | ID: mdl-31396832

ABSTRACT

Emergence of a genetically distinct, multidrug-resistant Staphylococcus capitis clone (NRCS-A) present in neonatal intensive care units has recently been extensively reported. The aims of the present study were to investigate which clones of S. capitis isolated from blood in a Swedish neonatal intensive care unit (NICU) have been present since 1987 and to investigate whether the NRCS-A clone has disseminated in Sweden. All S. capitis isolates from blood cultures of neonates (≤ 28 days of age) between 1987 and 2017 (n = 46) were whole-genome sequenced, and core genome multilocus sequence typing (cgMLST) was performed. Single-nucleotide polymorphism (SNP)-based phylogenetic relationships between the S. capitis isolates and in silico predictions of presence of genetic traits specific to the NRCS-A clone were identified. Furthermore, antibiotic susceptibility testing, including screening for heterogeneous glycopeptide-intermediate resistance, was performed. Thirty-five isolates clustered closely to the isolates previously determined as belonging to the NRCS-A clone and had fewer than 81 core genome loci differences out of 1063. Twenty-one of these isolates were multidrug resistant. The NRCS-A clone was found in 2001. Six pairs of isolates had differences of fewer than two SNPs. Genetic traits associated with the NRCS-A clone such as nsr, ebh, tarJ, and CRISPR were found in all 35 isolates. The increasing incidence of S. capitis blood cultures of neonates is predominantly represented by the NRSC-A clone at our NICU in Sweden. Furthermore, there were indications of transmission between cases; adherence to basic hygiene procedures and surveillance measures are thus warranted.


Subject(s)
Bacteremia/microbiology , Genome, Bacterial/genetics , Staphylococcal Infections/microbiology , Staphylococcus capitis/genetics , Staphylococcus capitis/isolation & purification , Anti-Bacterial Agents/pharmacology , Bacteremia/epidemiology , Drug Resistance, Multiple, Bacterial , Genes, Bacterial/genetics , Humans , Infant, Newborn , Intensive Care Units, Neonatal , Microbial Sensitivity Tests , Phylogeny , Polymorphism, Single Nucleotide/genetics , Staphylococcal Infections/epidemiology , Staphylococcus capitis/classification , Staphylococcus capitis/drug effects , Sweden/epidemiology
12.
Drug Discov Ther ; 13(3): 145-149, 2019 Jul 22.
Article in English | MEDLINE | ID: mdl-31231110

ABSTRACT

Antibiotic resistance crisis occasioned by sporadic appearance of multi-drug resistance (MDR) in human pathogens to clinically applied antimicrobials is a serious threat to global health. In this study, we investigated the drug resistant phenotype of Gram-positive cocci isolates from environment. Staphylococcus capitis and Staphylococcus haemolyticus colonies were isolated on mannitol-salt agar plates supplemented with tetracycline. Antibiotic susceptibility profile of the isolates via minimum inhibitory concentration (MIC) determination was examined. Isolates showed decreased sensitivity to clinically applied antimicrobial agents: tetracycline, kanamycin, erythromycin, norfloxacin, teicoplanin, and ampicillin. Genomic analysis demonstrated the presence of multiple antibiotic resistant genes in these bacteria, suggesting the origin of the multiple antimicrobials resistant phenotype. Tetracycline resistance of these isolates was transduced to Staphylococcus aureus-RN4220 strain. These findings indicate the presence of multiple antimicrobials resistant S. capitis and S. haemolyticus strain in a non-hospital setting. Moreover, the presence of plethora of genes responsible for MDR suggest that these strains could present potential threat to human health by serving as reservoir for lateral transference of antimicrobial resistance conferring foreign genetic elements to other clinically relevant pathogens.


Subject(s)
Drug Resistance, Multiple, Bacterial , Staphylococcus capitis/isolation & purification , Staphylococcus haemolyticus/isolation & purification , Whole Genome Sequencing/methods , Anti-Bacterial Agents/pharmacology , Bacterial Proteins/genetics , Base Composition , Coagulase/metabolism , Genome Size , Microbial Sensitivity Tests , Staphylococcus capitis/drug effects , Staphylococcus capitis/genetics , Staphylococcus haemolyticus/drug effects , Staphylococcus haemolyticus/genetics
13.
Article in English | MEDLINE | ID: mdl-30962919

ABSTRACT

Background: Once present in a neonatal intensive care unit (NICU), multidrug resistant Staphylococcus capitis NRCS-A is able to settle and diffuse. Objective: The objective of this study was to evaluate the impact of infection control (IC) interventions to reduce the spread of Staphylococcus capitis NRCS-A in a NICU. Methods: Between December 2012 and December 2017, all patients presenting positive sampling (blood, skin or catheter) to S. capitis were included, and clinical data were recorded from electronic clinical charts. The IC team has continually implemented measures of control infections (hand hygiene, standard precautions, patient contact isolation and disinfection of the inanimate environment). From May 2015, a steam cleaner was implemented in the cleaning procedure instead of disinfectant to disinfect heating tables and incubators. Four periods were determined: Period 1 (P1) before steam cleaner acquisition; Period 2 (P2) after implementation steam cleaner; Period 3 (P3) when the steam cleaner had broken down, and Period 4 (P4) when the steam cleaner was functional again. The consumption of antibiotics and the epidemiology of infections inside the NICU were investigated during the study period. Results: During the studied period, 37 infants were infected or colonized by S. capitis. The incidences of infection or colonization by S. capitis were P1 = 1.04‰, P2 = 0.55‰, P3 = 3.95 ‰ and P4 = 0‰ and were significantly different between P1-P3 and P2-P4 (p < 0.001). During the different periods, antibiotics consumption and bacterial epidemiology of the ward were stable. Conclusions: The use of steam vapor system was associated with a significantly decreased incidence of S. capitis NRCS-A infection or colonization and could constitute an effective and safe procedure to control and eradicate its diffusion inside NICUs.


Subject(s)
Anti-Bacterial Agents/therapeutic use , Cross Infection/prevention & control , Infection Control/instrumentation , Staphylococcal Infections/prevention & control , Staphylococcus capitis/isolation & purification , Anti-Bacterial Agents/pharmacology , Cross Infection/epidemiology , Cross Infection/microbiology , Drug Resistance, Multiple, Bacterial , Electronic Health Records , Female , Humans , Incidence , Infant , Infant, Newborn , Infection Control/methods , Intensive Care Units, Neonatal , Male , Patient Isolation , Staphylococcal Infections/epidemiology , Staphylococcus capitis/drug effects , Steam
14.
Article in English | MEDLINE | ID: mdl-30617095

ABSTRACT

Coagulase-negative staphylococci (CoNS) represent one of the major causes of health care- and medical device-associated infections. Emerging antimicrobial resistance has complicated the treatment of systemic infections caused by CoNS. Here, we describe the prevalence of antimicrobial resistance in clinical CoNS strains from a tertiary care hospital over a 4-year period, and we observed a significant increase in resistance to daptomycin. Notably, Staphylococcus capitis accounted for the majority of these daptomycin-resistant (DAP-R) CoNS. To further investigate the mechanisms of daptomycin resistance in CoNS, daptomycin-susceptible clinical strains of S. capitis and Staphylococcus epidermidis underwent in vitro daptomycin exposure to generate DAP-R CoNS mutants. Unlike that seen with Staphylococcus aureus, alteration of cell surface charge was not observed in the DAP-R CoNS strains, but biofilm formation was compromised. Whole-genome sequencing analysis of the DAP-R CoNS strains identified single nucleotide polymorphisms (SNPs) in walKR, the essential two-component regulatory system controlling cell wall biogenesis. PCR and sequencing of walK and walR from 17 DAP-R CoNS clinical isolates identified seven nonsynonymous mutations. The results were confirmed by the recreation of the walK SNP in S. epidermidis, which resulted in reduced susceptibility to daptomycin and vancomycin. This study highlights the significance of CoNS in evolving daptomycin resistance and showed that walKR is shared among the staphylococcal species and is involved in antibiotic resistance development. Notably, we did not observe mutations in genes responsible for phospholipid biosynthesis or an altered cell surface charge, suggesting that reduced daptomycin susceptibility in CoNS may emerge in a fashion distinct from that in S. aureus.


Subject(s)
Anti-Bacterial Agents/pharmacology , Daptomycin/pharmacology , Drug Resistance, Bacterial/genetics , Staphylococcus capitis/genetics , Staphylococcus epidermidis/genetics , Amino Acid Substitution/genetics , Bacterial Proteins/genetics , Biofilms/growth & development , Cross Infection/microbiology , Histidine Kinase/genetics , Humans , Microbial Sensitivity Tests , Polymorphism, Single Nucleotide/genetics , Staphylococcal Infections/drug therapy , Staphylococcus aureus/drug effects , Staphylococcus capitis/drug effects , Staphylococcus capitis/isolation & purification , Staphylococcus epidermidis/drug effects , Staphylococcus epidermidis/isolation & purification , Tertiary Care Centers , Vancomycin/pharmacology
15.
BMC Genomics ; 19(1): 810, 2018 Nov 08.
Article in English | MEDLINE | ID: mdl-30409159

ABSTRACT

BACKGROUND: Staphylococcus caprae is an animal-associated bacterium regarded as part of goats' microflora. Recently, S. caprae has been reported to cause human nosocomial infections such as bacteremia and bone and joint infections. However, the mechanisms responsible for the development of nosocomial infections remain largely unknown. Moreover, the complete genome sequence of S. caprae has not been determined. RESULTS: We determined the complete genome sequences of three methicillin-resistant S. caprae strains isolated from humans and compared these sequences with the genomes of S. epidermidis and S. capitis, both of which are closely related to S. caprae and are inhabitants of human skin capable of causing opportunistic infections. The genomes showed that S. caprae JMUB145, JMUB590, and JMUB898 strains contained circular chromosomes of 2,618,380, 2,629,173, and 2,598,513 bp, respectively. JMUB145 carried type V SCCmec, while JMUB590 and JMUB898 had type IVa SCCmec. A genome-wide phylogenetic SNP tree constructed using 83 complete genome sequences of 24 Staphylococcus species and 2 S. caprae draft genome sequences confirmed that S. caprae is most closely related to S. epidermidis and S. capitis. Comparative complete genome analysis of eight S. epidermidis, three S. capitis and three S. caprae strains revealed that they shared similar virulence factors represented by biofilm formation genes. These factors include wall teichoic acid synthesis genes, poly-gamma-DL-glutamic acid capsule synthesis genes, and other genes encoding nonproteinaceous adhesins. The 17 proteinases/adhesins and extracellular proteins known to be associated with biofilm formation in S. epidermidis were also conserved in these three species, and their biofilm formation could be detected in vitro. Moreover, two virulence-associated gene clusters, the type VII secretion system and capsular polysaccharide biosynthesis gene clusters, identified in S. aureus were present in S. caprae but not in S. epidermidis and S. capitis genomes. CONCLUSION: The complete genome sequences of three methicillin-resistant S. caprae isolates from humans were determined for the first time. Comparative genome analysis revealed that S. caprae is closely related to S. epidermidis and S. capitis at the species level, especially in the ability to form biofilms, which may lead to increased virulence during the development of S. caprae infections.


Subject(s)
Staphylococcal Infections/microbiology , Staphylococcus capitis/genetics , Staphylococcus epidermidis/genetics , Staphylococcus/genetics , Virulence Factors/genetics , Whole Genome Sequencing/methods , Genome, Viral , Humans , Phylogeny , Staphylococcus/classification , Staphylococcus/isolation & purification , Staphylococcus capitis/isolation & purification , Staphylococcus epidermidis/isolation & purification , Virulence
16.
Int J Antimicrob Agents ; 51(6): 875-880, 2018 Jun.
Article in English | MEDLINE | ID: mdl-29407274

ABSTRACT

The fusidic acid (FUS) resistance determinants fusB, fusC, fusD and fusF in coagulase-negative staphylococci (CoNS) clinical isolates were examined. Among 208 FUS-resistant isolates, the fusB gene was the most common resistance determinant in each species, except in Staphylococcus hominis subsp. hominis or in species carrying intrinsic fusD or fusF. In S. hominis subsp. hominis, the fusC gene was the major determinant responsible for FUS resistance. To understand the genetic context of fusC in S. hominis subsp. hominis, 31 fusC-positive S. hominis subsp. hominis isolates were examined. Among these isolates, 14 carried SCCfusC, 3 carried an SCC476-like element and 7 carried a new SCC structure (SCC3390). As shown by pulsed-field gel electrophoresis (PFGE) and multilocus sequence typing (MLST) analyses, the S. hominis subsp. hominis clinical isolates showed limited clonality. Taken together, SCCfusC has been found in S. hominis subsp. hominis, Staphylococcus epidermidis, Staphylococcus haemolyticus, Staphylococcus capitis subsp. ureolyticus and Staphylococcus aureus, suggesting its wide distribution and spread among different species of staphylococci.


Subject(s)
Anti-Bacterial Agents/pharmacology , Drug Resistance, Bacterial/genetics , Fusidic Acid/pharmacology , Gene Transfer, Horizontal/genetics , Methicillin-Resistant Staphylococcus aureus/drug effects , Methicillin-Resistant Staphylococcus aureus/genetics , Staphylococcus hominis/genetics , Bacterial Proteins/genetics , Humans , Methicillin-Resistant Staphylococcus aureus/isolation & purification , Microbial Sensitivity Tests , Multilocus Sequence Typing , Staphylococcus capitis/drug effects , Staphylococcus capitis/genetics , Staphylococcus capitis/isolation & purification , Staphylococcus epidermidis/drug effects , Staphylococcus epidermidis/genetics , Staphylococcus epidermidis/isolation & purification , Staphylococcus haemolyticus/drug effects , Staphylococcus haemolyticus/genetics , Staphylococcus haemolyticus/isolation & purification , Staphylococcus hominis/drug effects , Staphylococcus hominis/isolation & purification , Taiwan
17.
Diagn Microbiol Infect Dis ; 90(2): 81-82, 2018 Feb.
Article in English | MEDLINE | ID: mdl-29157953

ABSTRACT

The multiresistant Staphylococcus capitis clone NRCS-A is a major pathogen in neonates worldwide. We show that NRCS-A grows as mauve colonies with a cream-color halo after a 5-day incubation on MRSA Brilliance 2 agar (Oxoid®). This innovative protocol will ease the screening of clinical and environmental niches of this clone.


Subject(s)
Bacteriological Techniques/methods , Chromogenic Compounds/analysis , Neonatal Sepsis/microbiology , Staphylococcal Infections/microbiology , Staphylococcus capitis/isolation & purification , Chromogenic Compounds/metabolism , Feces/microbiology , Female , Humans , Infant, Newborn , Intensive Care, Neonatal , Neonatal Sepsis/diagnosis , Pregnancy , Skin/microbiology , Staphylococcal Infections/diagnosis , Staphylococcus capitis/metabolism , Vagina/microbiology
18.
Sci Rep ; 7(1): 10447, 2017 09 05.
Article in English | MEDLINE | ID: mdl-28874737

ABSTRACT

Staphylococcus capitis TE8 was isolated from skin surface of a healthy human foot, and exhibited a strong antibacterial activity against Gram-positive bacteria, including Staphylococcus aureus. Whole genome sequence of S. capitis TE8 was obtained by shotgun and paired-end pyrosequencing with a coverage of 109-fold. The draft genome contains 2,516,639 bp in 8 scaffolds with 209 total contigs. The genome contains 2319 protein coding sequences, 58 tRNA and 3 rRNA. Genome sequence analysis revealed 4 distinct gene loci with the ability to encode antimicrobial peptides: (i) an epidermicin gene cluster; (ii) a gallidermin gene cluster; (iii) a gene cluster encoding six phenol soluble modulin (PSM) ß-type peptides (PSMß1-ß6) and (iv) an additional gene that belonged to PSMß family and encoded a 44 residues long peptide, HTP2388. Synthetic peptides with sequence identical to seven PSMß-like peptides i.e. PSMß1-ß6 and peptide HTP2388 showed antibacterial activity. Genome sequence also revealed genes for adhesins, intracellular adhesins, osmoadaptation, oxidative and acid stress tolerance possibly responsible for initial attachment, colonization and survival of S. capitis TE8 on human skin. Comparative genome analysis revealed presence of a gamut of genes in S. capitis strains in comparison to Staphylococcus epidermidis and Staphylococcus caprae indicating towards their possible role in better adaptation and survival on human skin.


Subject(s)
Adaptation, Biological/genetics , Antimicrobial Cationic Peptides/genetics , Genome, Bacterial , Genomics , Staphylococcus capitis/physiology , Amino Acid Sequence , Antibiosis , Antimicrobial Cationic Peptides/chemistry , Antimicrobial Cationic Peptides/pharmacology , Computational Biology/methods , Gene Order , Genomics/methods , Humans , Microbial Sensitivity Tests , Multigene Family , Phylogeny , RNA, Ribosomal, 16S/genetics , Skin/microbiology , Staphylococcal Skin Infections/microbiology , Staphylococcus capitis/isolation & purification
19.
Acta Paediatr ; 106(10): 1576-1582, 2017 Oct.
Article in English | MEDLINE | ID: mdl-28631328

ABSTRACT

AIM: This Swedish study determined which species of coagulase-negative staphylococci (CoNS) were found in neonatal blood cultures and whether they included Staphylococcus capitis clones with decreased susceptibility to vancomycin. METHODS: CoNS isolates (n = 332) from neonatal blood cultures collected at Örebro University Hospital during 1987-2014 were identified to species level with matrix-assisted laser desorption/ionisation time-of-flight mass spectrometry (MALDI-TOF MS). The antibiotic susceptibility pattern of S. capitis isolates was determined by the disc diffusion test and Etest, and the presence of heterogeneous glycopeptide-intermediate S. capitis (hGISC) was evaluated. RESULTS: Staphylococcus epidermidis (67.4%), Staphylococcus haemolyticus (10.5%) and S. capitis (9.6%) were the most common CoNS species. Of the S. capitis isolates, 75% were methicillin-resistant and 44% were multidrug-resistant. No isolate showed decreased susceptibility to vancomycin, but at least 59% displayed the hGISC phenotype. Staphylococcus capitis isolates related to the strain CR01 displaying pulsotype NRCS-A were found. CONCLUSION: Staphylococcus epidermidis, S. haemolyticus and S. capitis were the predominant species detected in neonatal blood cultures by MALDI-TOF MS. The number of episodes caused by S. capitis increased during the study period, but no isolates with decreased susceptibility to vancomycin were identified. However, S. capitis isolates related to the strain CR01 displaying pulsotype NRCS-A were found.


Subject(s)
Infant, Newborn/blood , Staphylococcus capitis/isolation & purification , Blood/microbiology , Drug Resistance, Multiple, Bacterial/genetics , Humans , Phenotype , Staphylococcus capitis/genetics , Whole Genome Sequencing
20.
Perit Dial Int ; 37(1): 115-116, 2017.
Article in English | MEDLINE | ID: mdl-28153968

ABSTRACT

Acute peritonitis remains the most common complication of peritoneal dialysis (PD), with coagulase-negative staphylococci (CoNS) reported to account for more than 25% of peritonitis episodes (1). Staphylococcus capitis is a gram-positive, catalase-positive CoNS that was originally identified as a commensal on the skin of the human scalp (2). Advancement of microbiological technologies for bacterial identification enables diagnosis of previously unknown causes of acute peritonitis. This is the first reported case of acute peritonitis in a PD patient caused by S. capitis.


Subject(s)
Kidney Failure, Chronic/therapy , Peritoneal Dialysis/adverse effects , Peritonitis/drug therapy , Peritonitis/etiology , Staphylococcal Infections/drug therapy , Staphylococcus capitis/isolation & purification , Acute Disease , Ciprofloxacin/therapeutic use , Follow-Up Studies , Humans , Injections, Intraperitoneal , Kidney Failure, Chronic/diagnosis , Male , Middle Aged , Peritoneal Dialysis/methods , Peritonitis/microbiology , Severity of Illness Index , Staphylococcal Infections/etiology , Staphylococcal Infections/physiopathology , Treatment Outcome , Vancomycin/therapeutic use
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