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1.
Microbiol Spectr ; 10(1): e0251221, 2022 02 23.
Article in English | MEDLINE | ID: mdl-35196821

ABSTRACT

Mastitis, a highly prevalent disease in dairy cows, is commonly caused by local infection of the mammary gland. Our previous studies have suggested that the gut microbiota plays an important role in the development of mastitis in mice. However, the effects of rumen microbiota on bovine mastitis and the related mechanisms remain unclear. In this study, we assessed the effects and mechanisms of rumen microbiota on bovine mastitis based on the subacute rumen acidosis (SARA) model induced by feeding Holstein Frisian cows a high-concentrate diet for 8 weeks. Then, the inflammatory responses in the mammary gland and the bacterial communities of rumen fluid, feces, and milk were analyzed. The results showed that SARA induced mastitis symptoms in the mammary gland; activated a systemic inflammatory response; and increased the permeability of the blood-milk barrier, gut barrier, and rumen barrier. Further research showed that lipopolysaccharides (LPS), derived from the gut of SARA cows, translocated into the blood and accumulated in the mammary glands. Furthermore, the abundance of Stenotrophomonas was increased in the rumen of SARA cows, and mastitis was induced by oral administration of Stenotrophomonas in lactating mice. In conclusion, our findings suggested that mastitis is induced by exogenous pathogenic microorganisms as well as by endogenous pathogenic factors. Specifically, the elevated abundance of Stenotrophomonas in the rumen and LPS translocation from the rumen to the mammary gland were important endogenous factors that induced mastitis. Our study provides a foundation for novel therapeutic strategies that target the rumen microbiota in cow mastitis. IMPORTANCE Mastitis is a common and frequently occurring disease of humans and animals, especially in dairy farming, which has caused huge economic losses and brought harmful substance residues, drug-resistant bacteria, and other public health risks. The traditional viewpoint indicates that mastitis is mainly caused by exogenous pathogenic bacteria infecting the mammary gland. Our study found that the occurrence of mastitis was induced by the endogenous pathway. Evidence has shown that rumen-derived LPS enters the mammary gland through blood circulation, damaging the blood-milk barrier and then inducing inflammation of the mammary gland in cows. In addition, a higher abundance of Stenotrophomonas in the rumen was closely associated with the development of mastitis. This study provides a basis for novel therapeutic strategies that exploit the rumen microbiota against mastitis in cows.


Subject(s)
Gastrointestinal Microbiome , Mastitis, Bovine/microbiology , Rumen/microbiology , Animals , Bacterial Translocation , Cattle , Feces/microbiology , Female , Lactation , Mammary Glands, Animal/immunology , Mammary Glands, Animal/microbiology , Mastitis, Bovine/immunology , Mastitis, Bovine/physiopathology , Milk/metabolism , Stenotrophomonas/physiology
2.
Curr Genet ; 67(6): 891-907, 2021 Dec.
Article in English | MEDLINE | ID: mdl-34195871

ABSTRACT

Diverse agriculturally important microbes have been studied with known potential in plant growth promotion. Providing several opportunities, Stenotrophomonas species are characterized as promising plant enhancers, inducers, and protectors against environmental stressors. The S. indicatrix BOVIS40 isolated from the sunflower root endosphere possessed unique features, as genome insights into the Stenotrophomonas species isolated from oilseed crops in Southern Africa have not been reported. Plant growth-promotion screening and genome analysis of S. indicatrix BOVIS40 were presented in this study. The genomic information reveals various genes underlining plant growth promotion and resistance to environmental stressors. The genome of S. indicatrix BOVIS40 harbors genes involved in the degradation and biotransformation of organic molecules. Also, other genes involved in biofilm production, chemotaxis, and flagellation that facilitate bacterial colonization in the root endosphere and phytohormone genes that modulate root development and stress response in plants were detected in strain BOVIS40. IAA activity of the bacterial strain may be a factor responsible for root formation. A measurable approach to the S. indicatrix BOVIS40 lifestyle can strategically provide several opportunities in their use as bioinoculants in developing environmentally friendly agriculture sustainably. The findings presented here provide insights into the genomic functions of S. indicatrix BOVIS40, which has set a foundation for future comparative studies for a better understanding of the synergism among microbes inhabiting plant endosphere. Hence, highlighting the potential of S. indicatrix BOVIS40 upon inoculation under greenhouse experiment, thus suggesting its application in enhancing plant and soil health sustainably.


Subject(s)
Genome, Bacterial , Genomics , Helianthus/physiology , Plant Development , Stenotrophomonas/physiology , Symbiosis , Computational Biology/methods , Endophytes , Environment , Gene Expression Regulation, Bacterial , Hydrogen-Ion Concentration , Molecular Sequence Annotation , Phenotype , Phylogeny , Secondary Metabolism/genetics , Soil Microbiology
3.
Sci Rep ; 10(1): 19530, 2020 11 11.
Article in English | MEDLINE | ID: mdl-33177547

ABSTRACT

Over the past decades, one main issue that has emerged in ecological and environmental research is how losses in biodiversity influence ecosystem dynamics and functioning, and consequently human society. Although biodiversity is a common indicator of ecosystem functioning, it is difficult to measure biodiversity in microbial communities exposed to subtle or chronic environmental perturbations. Consequently, there is a need for alternative bioindicators to detect, measure, and monitor gradual changes in microbial communities against these slight, chronic, and continuous perturbations. In this study, microbial networks before and after subtle perturbations by adding S. acidaminiphila showed diverse topological niches and 4-node motifs in which microbes with co-occurrence patterns played the central roles in regulating and adjusting the intertwined relationships among microorganisms in response to the subtle environmental changes. This study demonstrates that microbial networks are a good bioindicator for chronic perturbation and should be applied in a variety of ecological investigations.


Subject(s)
Bioreactors/microbiology , Microbiota/physiology , Stenotrophomonas , Anaerobiosis , Biodiversity , Biological Oxygen Demand Analysis , Environmental Biomarkers , Methane/biosynthesis , Microbiota/genetics , Models, Biological , RNA, Ribosomal, 16S , Stenotrophomonas/physiology
4.
PLoS One ; 14(12): e0226155, 2019.
Article in English | MEDLINE | ID: mdl-31860658

ABSTRACT

Exploration of diverse environmental samples for plant growth-promoting microbes to fulfill the increasing demand for sustainable agriculture resulted in increased use of bacterial biofertilizer. We aimed for the isolation of plant growth-promoting as well as antibiotic sensitive bacteria from bovine manure samples. The basic theme of our study is to highlight potentials of bacteria in manure and the unchecked risk associated with the application of manure i.e. introducing antibiotic-resistant microbial flora, as fertilizer. Fifty-two, morphologically distinct isolates; from eight different manure samples, were subjected to plant growth-promoting parametric tests along with antibiotic resistance. Thirteen antibiotic sensitive bacterial strains with potentials of plant growth promotion further characterized by 16S rRNA ribotyping and the identified genera were Stenotrophomonas, Achromobacter, Pseudomonas, and Brevibacillus. Successful radish seeds germination under sterile in-vitro conditions showed the potential of selected bacterial isolates as plant growth-promoting bacteria. The results of this study confirmed plant growth-promoting characteristics of bovine manures' bacterial strains along with an alarming antibiotic resistance load which comprises 75% of bacterial isolated population. Our study showed distinct results of un-explored manure bacterial isolates for plant growth promotion and flagged ways associated with unchecked manure application in agriculture soil through high load of antibiotic resistant bacteria.


Subject(s)
Bacteria/classification , Manure/microbiology , RNA, Ribosomal, 16S/genetics , Raphanus/growth & development , Achromobacter/classification , Achromobacter/isolation & purification , Achromobacter/physiology , Agriculture/methods , Animals , Bacteria/genetics , Bacteria/isolation & purification , Brevibacillus/classification , Brevibacillus/isolation & purification , Brevibacillus/physiology , Cattle , Fertilizers , Germination , Microbial Sensitivity Tests , Pseudomonas/classification , Pseudomonas/isolation & purification , Pseudomonas/physiology , Raphanus/microbiology , Soil Microbiology , Stenotrophomonas/classification , Stenotrophomonas/isolation & purification , Stenotrophomonas/physiology
5.
Plant Mol Biol ; 100(6): 659-674, 2019 Aug.
Article in English | MEDLINE | ID: mdl-31187392

ABSTRACT

KEY MESSAGE: Oxalotrophic Stenotrophomonas isolated from tomato rhizosphere are able to protect plants against oxalate-producing pathogens by a combination of actions including induction of plant defence signalling callose deposition and the strengthening of plant cell walls and probably the degradation of oxalic acid. Oxalic acid plays a pivotal role in the virulence of the necrotrophic fungi Botrytis cinerea and Sclerotinia sclerotiorum. In this work, we isolated two oxalotrophic strains (OxA and OxB) belonging to the bacterial genus Stenotrophomonas from the rhizosphere of tomato plants. Both strains were capable to colonise endophytically Arabidopsis plants and protect them from the damage caused by high doses of oxalic acid. Furthermore, OxA and OxB protected Arabidopsis from S. sclerotiorum and B. cinerea infections. Bacterial inoculation induced the production of phenolic compounds and the expression of PR-1. Besides, both isolates exerted a protective effect against fungal pathogens in Arabidopsis mutants affected in the synthesis pathway of salicylic acid (sid2-2) and jasmonate perception (coi1). Callose deposition induced by OxA and OxB was required for protection against phytopathogens. Moreover, B. cinerea and S. sclerotiorum mycelial growth was reduced in culture media containing cell wall polysaccharides from leaves inoculated with each bacterial strain. These findings suggest that cell walls from Arabidopsis leaves colonised by these bacteria would be less susceptible to pathogen attack. Our results indicate that these oxalotrophic bacteria can protect plants against oxalate-producing pathogens by a combination of actions and show their potential for use as biological control agents against fungal diseases.


Subject(s)
Fungi/pathogenicity , Oxalates/metabolism , Solanum lycopersicum/microbiology , Stenotrophomonas/physiology , Arabidopsis/metabolism , Botrytis/metabolism , Botrytis/pathogenicity , Cell Wall/metabolism , Cyclopentanes/chemistry , Fungi/metabolism , Gene Expression Regulation, Plant/drug effects , Oxalic Acid/metabolism , Oxylipins/chemistry , Phylogeny , Plant Diseases/microbiology , Plant Leaves/metabolism , Plant Proteins/metabolism , Polysaccharides/metabolism , Salicylic Acid/pharmacology , Signal Transduction , Stenotrophomonas/isolation & purification
6.
ISME J ; 12(8): 1940-1951, 2018 08.
Article in English | MEDLINE | ID: mdl-29670216

ABSTRACT

Microorganisms frequently coexist in complex multispecies communities, where they distribute non-randomly, reflective of the social interactions that occur. It is therefore important to understand how social interactions and local spatial organization influences multispecies biofilm succession. Here the localization of species pairs was analyzed in three dimensions in a reproducible four-species biofilm model, to study the impact of spatial positioning of individual species on the temporal development of the community. We found, that as the biofilms developed, species pairs exhibited distinct intermixing patterns unique to the four-member biofilms. Higher biomass and more intermixing were found in four-species biofilms compared to biofilms with fewer species. Intriguingly, in local regions within the four member biofilms where Microbacterium oxydans was scant, both biomass and intermixing of all species were lowered, compared to regions where M. oxydans was present at typical densities. Our data suggest that Xanthomonas retroflexus and M. oxydans, both low abundant biofilm-members, intermixed continuously during the development of the four-species biofilm, hereby facilitating their own establishment. In turn, this seems to have promoted distinct spatial organization of Stenotrophomonas rhizophila and Paenibacillus amylolyticus enabling enhanced growth of all four species. Here local intermixing of bacteria advanced the temporal development of a multi-species biofilm.


Subject(s)
Bacterial Physiological Phenomena , Biofilms , Microbial Interactions , Actinobacteria/physiology , Biomass , Paenibacillus/physiology , Stenotrophomonas/physiology , Xanthomonas/physiology
7.
Int J Biol Macromol ; 108: 1219-1226, 2018 Mar.
Article in English | MEDLINE | ID: mdl-29126943

ABSTRACT

Tributyltin (TBT) used in a variety of industrial processes, subsequent discharge into the environment, its fate, toxicity and human exposure are topics of current concern. TBT degradation by alkaliphilic bacteria may be a key factor in the remediation of TBT in high pH contaminated sites. In this study, Stenotrophomonas chelatiphaga HS2 were isolated and identified from TBT contaminated site in Mediterranean Sea. S. chelatiphaga HS2 has vigor capability to transform TBT into dibutyltin and monobutyltin (DBT and MBT) at pH 9 and 7% NaCl (w/v). A gene was amplified and characterized from strain HS2 as SugE protein belongs to SMR protein family, a reverse transcription polymerase chain reaction analysis confirmed that SugE protein involved in the TBT degradation by HS2 strain. TBT bioremediation was investigated in stimulated TBT contaminated sediment samples (pH 9) using S chelatiphaga HS2 in association with E. coli BL21 (DE3)-pET28a(+)-sugE instead of S chelatiphaga HS2 alone reduced significantly the TBT half-life from 12d to 5d, although no TBT degradation appeared using E. coli BL21 (DE3)-pET28a(+)-sugE alone. This finding indicated that SugE gene increased the rate and degraded amount of TBT and is necessary in enhancing TBT bioremediation.


Subject(s)
Bacterial Proteins/metabolism , Stenotrophomonas/metabolism , Trialkyltin Compounds/isolation & purification , Trialkyltin Compounds/metabolism , Water Pollutants, Chemical/isolation & purification , Water Pollutants, Chemical/metabolism , Anti-Bacterial Agents/isolation & purification , Anti-Bacterial Agents/metabolism , Anti-Bacterial Agents/pharmacology , Biodegradation, Environmental , Geologic Sediments/microbiology , Hydrogen-Ion Concentration , Organotin Compounds/metabolism , Stenotrophomonas/physiology , Trialkyltin Compounds/pharmacology , Water Pollutants, Chemical/pharmacology
8.
Appl Environ Microbiol ; 83(23)2017 Dec 01.
Article in English | MEDLINE | ID: mdl-28986377

ABSTRACT

Cone snails are biomedically important sources of peptide drugs, but it is not known whether snail-associated bacteria affect venom chemistry. To begin to answer this question, we performed 16S rRNA gene amplicon sequencing of eight cone snail species, comparing their microbiomes with each other and with those from a variety of other marine invertebrates. We show that the cone snail microbiome is distinct from those in other marine invertebrates and conserved in specimens from around the world, including the Philippines, Guam, California, and Florida. We found that all venom ducts examined contain diverse 16S rRNA gene sequences bearing closest similarity to Stenotrophomonas bacteria. These sequences represent specific symbionts that live in the lumen of the venom duct, where bioactive venom peptides are synthesized.IMPORTANCE In animals, symbiotic bacteria contribute critically to metabolism. Cone snails are renowned for the production of venoms that are used as medicines and as probes for biological study. In principle, symbiotic bacterial metabolism could either degrade or synthesize active venom components, and previous publications show that bacteria do indeed contribute small molecules to some venoms. Therefore, understanding symbiosis in cone snails will contribute to further drug discovery efforts. Here, we describe an unexpected, specific symbiosis between bacteria and cone snails from around the world.


Subject(s)
Mollusk Venoms/chemistry , Snails/microbiology , Stenotrophomonas/isolation & purification , Stenotrophomonas/physiology , Symbiosis , Animals , DNA, Bacterial/genetics , Microbiota , Mollusk Venoms/metabolism , Peptides/chemistry , Peptides/metabolism , Phylogeny , RNA, Ribosomal, 16S/genetics , Snails/classification , Snails/physiology , Stenotrophomonas/genetics
9.
Braz J Microbiol ; 45(2): 627-31, 2014.
Article in English | MEDLINE | ID: mdl-25242950

ABSTRACT

Biofilm formation depends on several factors. The influence of different osmolarities on bacterial biofilm formation was studied. Two strains (Enterobacter sp. and Stenotrophomonas sp.) exhibited the most remarkable alterations. Biofilm formation is an important trait and its use has been associated to the protection of organisms against environmental stresses.


Subject(s)
Biofilms/drug effects , Enterobacter/drug effects , Enterobacter/physiology , Stenotrophomonas/drug effects , Stenotrophomonas/physiology , Osmolar Concentration , Sodium Chloride/metabolism , Sorbitol/metabolism
10.
J Appl Microbiol ; 117(4): 1012-24, 2014 Oct.
Article in English | MEDLINE | ID: mdl-25040365

ABSTRACT

AIMS: Biofilm formation and polycyclic aromatic hydrocarbons (PAHs) degradation by a marine bacterium Stenotrophomonas acidaminihila NCW-702 was investigated. METHODS AND RESULTS: The biofilm structure was studied by confocal laser scanning microscopy (CLSM). Both planktonic and biofilm cultures were used for PAHs (phenanthrene and pyrene) degradation. In 7 days, Sten. acidaminiphila biofilm culture efficiently degraded 71·1 ± 3·1% and 40·2 ± 2·4% of phenanthrene and pyrene, respectively, whereas 38·7 ± 2·5% of phenanthrene and 29·7 ± 1% of pyrene degradation was observed in planktonic culture. The presence of phenolic intermediates in the culture supernatant during degradation process was evaluated by Folin-Ciocalteu reagent. The average thickness and diffusion distance of Sten. acidaminiphila NCW-702 biofilm was found to be 23·94 ± 2·62 µm and 2·68 ± 0·7 µm, respectively. Bacterial biofilms have numerous metabolic features that aid in the degradation of hydrophobic organic pollutants. CONCLUSIONS: Biofilm of Sten. acidaminiphila NCW-702 was able to degrade PAHs more efficiently as compared to planktonic cells. The findings support the efficacy of biofilms over planktonic culture in bioremediation applications. SIGNIFICANCE AND IMPACT OF THE STUDY: The study provides a constructive application of bacterial biofilms for the bioremediation of hydrophobic organic contaminants. The biofilm mode remediation process has the advantage of reusability of bacterial biomass and is also a low cost process as compared to cell immobilization techniques.


Subject(s)
Biofilms , Polycyclic Aromatic Hydrocarbons/metabolism , Seawater/microbiology , Stenotrophomonas/physiology , Stenotrophomonas/ultrastructure , Water Pollutants, Chemical/metabolism , Biodegradation, Environmental , India , Plankton/metabolism , Stenotrophomonas/isolation & purification
11.
Braz. j. microbiol ; 45(2): 627-631, Apr.-June 2014. ilus, graf, tab
Article in English | LILACS | ID: lil-723127

ABSTRACT

Biofilm formation depends on several factors. The influence of different osmolarities on bacterial biofilm formation was studied. Two strains (Enterobacter sp. and Stenotrophomonas sp.) exhibited the most remarkable alterations. Biofilm formation is an important trait and its use has been associated to the protection of organisms against environmental stresses.


Subject(s)
Biofilms/drug effects , Enterobacter/drug effects , Enterobacter/physiology , Stenotrophomonas/drug effects , Stenotrophomonas/physiology , Osmolar Concentration , Sodium Chloride/metabolism , Sorbitol/metabolism
12.
Zhongguo Zhong Yao Za Zhi ; 39(24): 4754-8, 2014 Dec.
Article in Chinese | MEDLINE | ID: mdl-25898572

ABSTRACT

Based on previous results of 16S rDNA sequence homologuous and results of physic-biochemical indexes and morphological characteristics in the present work, bacterial strain ge15 isolated from roots of ginseng plants was identified as Stenotrophomonas rhizophila. Confronting incubation results showed that, strain ge15 inhibited the growth of Alternaria panax, Phytophthora cactorum, and Cylindrocapon destructans significantly, and the width of inhibition zone was 13.3, 24.0, 12.0 mm, respectively. Further results showed that the emergence rate and seedling survive rate of ge15 treatment was significantly higher than those of the control, and which was similar to pesticide carbendazol treatment. The ge15 strain has good application potential in ginseng diseases control without contamination.


Subject(s)
Alternaria/growth & development , Hypocreales/growth & development , Panax/microbiology , Phytophthora/growth & development , Plant Diseases/microbiology , Stenotrophomonas/physiology , Alternaria/physiology , Antibiosis , Biological Control Agents , Hypocreales/physiology , Panax/growth & development , Phytophthora/physiology , Plant Roots/growth & development , Plant Roots/microbiology , Seedlings/growth & development , Seedlings/microbiology , Stenotrophomonas/classification , Stenotrophomonas/cytology , Stenotrophomonas/isolation & purification
13.
Invest Ophthalmol Vis Sci ; 53(7): 3896-905, 2012 Jun 22.
Article in English | MEDLINE | ID: mdl-22589441

ABSTRACT

PURPOSE: Multi-species biofilms associated with contact lens cases and lenses can predispose individuals to contact lens-related inflammatory complications. Our study used culture-independent methods to assess the relationship between the severity of contact lens-related disease and bacteria residing in biofilms of contact lens cases and lenses. METHODS: Contact lens cases and lenses from 28 patients referred to the West Virginia University Eye Institute and diagnosed as having mild keratitis, keratitis with focal infiltrates, or corneal ulcers were processed and evaluated for bacterial composition based on 16S ribosomal RNA gene sequencing. Cases and lenses from nine asymptomatic contact lens wearers were processed in a manner similar to controls. Relationships between disease severity, bacterial types, and bacterial diversity were evaluated statistically. RESULTS: Disease severity and presenting visual acuity correlated with an increase in the diversity of bacterial types isolated from contact lens cases. A significant difference also was observed in the number of bacterial types associated with the three clinical groups. Achromobacter, Stenotrophomonas, and Delftia were prevalent in all disease groups, and Achromobacter and Stenotrophomonas were present in one asymptomatic control. Scanning electron microscopy revealed that Achromobacter and Stenotrophomonas formed a biofilm on the surface of contact lenses. CONCLUSIONS: Culture-independent methods identified an association between disease severity and bacterial diversity in biofilms isolated from cases and lenses of patients with contact lens-related corneal disease. Achromobacter, Stenotrophomonas, and Delftia were predominant bacteria identified in our study, drawing attention to their emerging role in contact lens-related disease.


Subject(s)
Biofilms , Contact Lenses, Hydrophilic/microbiology , Corneal Ulcer/microbiology , Eye Infections, Bacterial/microbiology , Gram-Negative Aerobic Bacteria/physiology , Gram-Negative Bacterial Infections/microbiology , Achromobacter/isolation & purification , Achromobacter/physiology , Achromobacter/ultrastructure , Adolescent , Adult , Corneal Ulcer/diagnosis , Corneal Ulcer/therapy , DNA, Bacterial/analysis , Delftia/isolation & purification , Delftia/physiology , Delftia/ultrastructure , Eye Infections, Bacterial/diagnosis , Eye Infections, Bacterial/therapy , Female , Gram-Negative Aerobic Bacteria/isolation & purification , Gram-Negative Aerobic Bacteria/ultrastructure , Gram-Negative Bacterial Infections/diagnosis , Gram-Negative Bacterial Infections/therapy , Humans , Male , Microscopy, Electron, Scanning , Middle Aged , Polymerase Chain Reaction , RNA, Bacterial/genetics , RNA, Ribosomal, 16S/genetics , Stenotrophomonas/isolation & purification , Stenotrophomonas/physiology , Stenotrophomonas/ultrastructure , Visual Acuity/physiology , Young Adult
14.
Int J Syst Evol Microbiol ; 61(Pt 3): 598-604, 2011 Mar.
Article in English | MEDLINE | ID: mdl-20400671

ABSTRACT

A Gram-stain-negative, motile, aerobic bacterial strain, designated MJ03(T), was isolated from sewage and was characterized taxonomically by using a polyphasic approach. Comparative 16S rRNA gene sequence analysis showed that strain MJ03(T) belongs to the family Xanthomonadaceae, class Gammaproteobacteria, and was related most closely to Stenotrophomonas acidaminiphila AMX 19(T) (97.9  % sequence similarity), Stenotrophomonas humi R-32729(T) (97.1  %), Stenotrophomonas nitritireducens L2(T) (96.9  %), Stenotrophomonas maltophila ATCC 13637(T) (96.8  %) and Stenotrophomonas terrae R-32768(T) (96.7  %). The G+C content of the genomic DNA of strain MJ03(T) was 64.7 mol%. The detection of a quinone system with ubiquinone Q-8 as the predominant component and a fatty acid profile with iso-C15:0, iso-C11:0, iso-C14:0, iso-C17:1ω9c, iso-C11:0 3-OH and iso-C13:0 3-OH as major components supported the affiliation of strain MJ03(T) to the genus Stenotrophomonas. However, levels of DNA-DNA relatedness between strain MJ03(T) and the type strains of five closely related species of the genus Stenotrophomonas ranged from 11 to 34  %, showing clearly that the isolate represents a novel genospecies. Strain MJ03(T) could be differentiated clearly from its phylogenetic neighbours on the basis of several phenotypic, genotypic and chemotaxonomic features. Therefore, strain MJ03(T) is considered to represent a novel species of the genus Stenotrophomonas, for which the name Stenotrophomonas daejeonensis sp. nov. is proposed. The type strain is MJ03(T) (=KCTC 22451(T) =JCM 16244(T)).


Subject(s)
Sewage/microbiology , Stenotrophomonas/classification , Stenotrophomonas/isolation & purification , Base Composition , Cluster Analysis , DNA, Bacterial/chemistry , DNA, Bacterial/genetics , DNA, Ribosomal/chemistry , DNA, Ribosomal/genetics , Fatty Acids/analysis , Molecular Sequence Data , Nucleic Acid Hybridization , Phylogeny , Quinones/analysis , RNA, Ribosomal, 16S/genetics , Sequence Analysis, DNA , Stenotrophomonas/genetics , Stenotrophomonas/physiology
15.
Int J Syst Evol Microbiol ; 61(Pt 4): 926-931, 2011 Apr.
Article in English | MEDLINE | ID: mdl-20495025

ABSTRACT

A Gram-negative, rod-shaped, non-spore-forming and nitrogen-fixing bacterium, designated ICB 89(T), was isolated from stems of a Brazilian sugar cane variety widely used in organic farming. 16S rRNA gene sequence analysis revealed that strain ICB 89(T) belonged to the genus Stenotrophomonas and was most closely related to Stenotrophomonas maltophilia LMG 958(T), Stenotrophomonas rhizophila LMG 22075(T), Stenotrophomonas nitritireducens L2(T), [Pseudomonas] geniculata ATCC 19374(T), [Pseudomonas] hibiscicola ATCC 19867(T) and [Pseudomonas] beteli ATCC 19861(T). DNA-DNA hybridization together with chemotaxonomic data and biochemical characteristics allowed the differentiation of strain ICB 89(T) from its nearest phylogenetic neighbours. Therefore, strain ICB 89(T) represents a novel species, for which the name Stenotrophomonas pavanii sp. nov. is proposed. The type strain is ICB 89(T) ( = CBMAI 564(T)  = LMG 25348(T)).


Subject(s)
Nitrogen Fixation , Saccharum/microbiology , Stenotrophomonas/classification , Stenotrophomonas/isolation & purification , Brazil , Cluster Analysis , DNA, Bacterial/chemistry , DNA, Bacterial/genetics , DNA, Ribosomal/chemistry , DNA, Ribosomal/genetics , Molecular Sequence Data , Nucleic Acid Hybridization , Organic Agriculture , Phylogeny , RNA, Ribosomal, 16S/genetics , Sequence Analysis, DNA , Stenotrophomonas/genetics , Stenotrophomonas/physiology
16.
Bioresour Technol ; 102(3): 3227-33, 2011 Feb.
Article in English | MEDLINE | ID: mdl-21123060

ABSTRACT

A strain, Stenotrophomonas HPC383 is isolated from effluent treatment plant treating wastewater from pesticide industry; degrades various aromatic compounds (cresols, phenol, catechol, 4methyl-catechol and hydroquinone) and crude oil, as determined through HPLC and GC analysis. Culture HPC383 could degrade (%) various compounds (1 mM) from a mixture: phenol - 99, p-cresol - 100, 4-methylcatechol - 96 and hydroquinone - 43 within 48 h of incubation, whereas it took 7 days to degrade 94% of 0.5% crude oil. Gene locus dmpN, to identify phenol degrading capacity was determined by PCR followed by southern analysis. The sequenced DNA fragment exhibited 99% sequence similarity to phenol hydroxylase gene from Arthrobacter sp. W1 (FJ610336). Amino acid sequence analysis of phenol hydroxylase reveals it to belong to high-Ks (affinity constant) group. Application of HPC383 in bioremediation of aquatic and terrestrial sites contaminated with petrochemical has been suggested.


Subject(s)
Hydrocarbons, Aromatic/metabolism , Mixed Function Oxygenases/genetics , Pesticides/metabolism , Stenotrophomonas/classification , Stenotrophomonas/physiology , Water Pollutants, Chemical/metabolism , Water Purification/methods , Base Sequence , Biodegradation, Environmental , Molecular Sequence Data , Operon/genetics , Sequence Homology, Nucleic Acid , Species Specificity , Stenotrophomonas/chemistry
17.
Science ; 325(5942): 833, 2009 Aug 14.
Article in English | MEDLINE | ID: mdl-19679806

ABSTRACT

Microbes are incredibly abundant and diverse and are key to ecosystem functioning, yet relatively little is known about the ecological and evolutionary mechanisms that shape their distributions. Bacteriophages, viral parasites that lyse their bacterial hosts, exert intense and spatially varying selection pressures on bacteria and vice versa. We measured local adaptation of bacteria and their associated phages in a centimeter-scale soil population. We first demonstrate that a large proportion of bacteria is sensitive to locally occurring phages. We then show that sympatric phages (isolated from the same 2-gram soil samples as the bacteria) are more infective than are phages from samples some distance away. This study demonstrates the importance of biotic interactions for the small-scale spatial structuring of microbial genetic diversity in soil.


Subject(s)
Adaptation, Physiological , Bacteria/virology , Bacteriophages/physiology , Soil Microbiology , Stenotrophomonas/virology , Bacteria/genetics , Bacterial Physiological Phenomena , Bacteriophages/genetics , Biological Evolution , Ecosystem , Genetic Variation , Molecular Sequence Data , Selection, Genetic , Stenotrophomonas/genetics , Stenotrophomonas/physiology , Viral Plaque Assay
18.
Syst Appl Microbiol ; 32(3): 157-62, 2009 May.
Article in English | MEDLINE | ID: mdl-19216044

ABSTRACT

A new ethylenediaminetetraacetic acid (EDTA)-utilizing gammaproteobacterial strain LPM-5(T) was isolated from municipal sewage sludge. Aerobic, gram-negative, motile rods multiply by binary fission. Neutrophilic and mesophilic, these are unable to grow in the presence of 3% NaCl (w/v), and unable to reduce nitrate to nitrite, and are oxidase and catalase positive, but lipase negative. The major cellular fatty acids are C(i15:0), C(a15:0) and C(16:1w7c). The dominant phospholipids are phosphatidylethanolamine, phosphatidylglycerol and diphosphatidylglycerol (cardiolipin). The DNA G+C content is 68.3mol% (T(m)). The 16S rRNA gene sequence analysis showed a high similarity of strain LPM-5(T) to the species members of genus Stenotrophomonas: S. maltophilia LMG 958(T) (98.6%), S. rhizophila CCUG 47042(T) (98.3%), S. koreensis TR6-01(T) (97.6%) and S. acidaminiphila CIP 106456(T) (97.0%). Based on these results and modest DNA-DNA hybridization levels with S. maltophilia VKM B-591(T) (=LMG 958(T)) (51%) and S. rhizophila CCUG 47042(T) (52%), the isolate was classified as a novel species, Stenotrophomonas chelatiphaga sp. nov. (type strain LPM-5(T)=VKM B-2486=DSM-21508=CCUG 57178).


Subject(s)
Edetic Acid/metabolism , Stenotrophomonas/classification , Aerobiosis , Bacterial Typing Techniques , DNA, Bacterial/analysis , DNA, Ribosomal/analysis , Fatty Acids/analysis , Genes, rRNA , Nucleic Acid Hybridization , Phospholipids/analysis , Phylogeny , RNA, Ribosomal, 16S/genetics , Sequence Analysis, DNA , Sewage/microbiology , Species Specificity , Stenotrophomonas/genetics , Stenotrophomonas/isolation & purification , Stenotrophomonas/physiology
19.
FEMS Microbiol Lett ; 291(2): 162-8, 2009 Feb.
Article in English | MEDLINE | ID: mdl-19146572

ABSTRACT

Chromium (Cr)-resistant bacteria isolated from a soil with 6 g kg(-1) of Cr were identified based on 16S rRNA gene sequence analysis as a Stenotrophomonas, and designated as JD1. Growth of JD1 was accompanied by transformation of Cr(VI) to Cr(III) in liquid medium initially containing 300 mg L(-1) Cr(VI), the maximum concentration allowing growth. JD1 produced the highest levels of a Cr(VI)-binding exopolysaccharide when grown in medium with 100 mg L(-1) Cr(VI). The relative exopolysaccharide monosaccharide composition was analysed by HPLC, which showed that rhamnose+galactose was the major component, and that its relative level increased when cells were grown with Cr(VI). JD1 grew as a biofilm on various inert surfaces. Biofilm macromolecular composition analysis indicated that the relative levels of exopolysaccharide and protein were more abundant in biofilms grown in 100 mg L(-1) Cr(VI), whereas relative uronic acid levels remained constant. Biofilm cells exposed to Cr(VI) were elongated, grouped in clusters and exopolysaccharide obtained from the biofilm extracellular matrix had an enhanced capacity to bind Cr(VI). Exopolysaccharide production and composition, and biofilm growth are discussed as a mechanism of protection that allows survival during Cr(VI) stress.


Subject(s)
Chromium/metabolism , Soil Microbiology , Stenotrophomonas/physiology , Bacterial Proteins/genetics , Bacterial Proteins/metabolism , Biofilms , Molecular Sequence Data , Polysaccharides, Bacterial/chemistry , Polysaccharides, Bacterial/metabolism , Stenotrophomonas/chemistry , Stenotrophomonas/genetics , Stenotrophomonas/isolation & purification
20.
Arch Microbiol ; 189(4): 337-44, 2008 Apr.
Article in English | MEDLINE | ID: mdl-18034228

ABSTRACT

Stenotrophomonas maltophilia is known to be of significance as opportunistic pathogen as well as a source of biocontrol and bioremediation activities. S. maltophilia strains have been isolated from rhizospheres, soil, clinical material, aquatic habitats, but little is known about Stenotrophomonas strains recovered from marine environments. During a survey of the biodiversity of Pseudomonas-like bacteria associated with deep-sea invertebrates six Stenotrophomonas strains were isolated from sponge, sea urchin, and ophiura specimens collected from differing Pacific areas, including the Philippine Sea, the Fiji Sea and the Bering Sea. 16S rRNA gene sequence analysis confirmed an assignment of marine isolates to the genus Stenotrophomonas as it placed four strains into the S. maltophilia CIP 60.77T cluster and two related to the S. rhizophila DSM 14405T. Together with a number of common characteristics typical of S. maltophilia and S. rhizophila marine isolates exhibited differences in pigmentation, a NaCl tolerance, a range of temperatures, which supported their growth, substrate utilization pattern, and antibiotics resistance. Strains displayed hemolytic and remarkable inhibitory activity against a number of fungal cultures and Gram-positive microorganisms, but very weak or none against Candida albicans. This is the first report on isolation, taxonomic characterization and antimicrobial activity of Stenotrophomonas strains isolated from deep-sea invertebrates.


Subject(s)
Antibiosis , Invertebrates/microbiology , Seawater/microbiology , Stenotrophomonas/isolation & purification , Stenotrophomonas/physiology , Animals , Anti-Bacterial Agents/metabolism , Anti-Bacterial Agents/pharmacology , Antifungal Agents/metabolism , Antifungal Agents/pharmacology , Bacteria/drug effects , Bacterial Physiological Phenomena , DNA, Bacterial/genetics , DNA, Ribosomal/genetics , Drug Resistance, Bacterial , Fatty Acids/chemistry , Fatty Acids/metabolism , Fungi/drug effects , Fungi/physiology , Molecular Sequence Data , Pacific Ocean , Phenotype , Phylogeny , Pigments, Biological/chemistry , Pigments, Biological/metabolism , RNA, Ribosomal, 16S/genetics , Sequence Analysis, DNA , Stenotrophomonas/chemistry , Stenotrophomonas/classification
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