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1.
Neuron ; 109(20): 3283-3297.e11, 2021 10 20.
Article in English | MEDLINE | ID: mdl-34672983

ABSTRACT

Deep brain temperature detection by hypothalamic warm-sensitive neurons (WSNs) has been proposed to provide feedback information relevant for thermoregulation. WSNs increase their action potential firing rates upon warming, a property that has been presumed to rely on the composition of thermosensitive ion channels within WSNs. Here, we describe a synaptic mechanism that regulates temperature sensitivity of preoptic WSNs and body temperature. Experimentally induced warming of the mouse hypothalamic preoptic area in vivo triggers body cooling. TRPM2 ion channels facilitate this homeostatic response and, at the cellular level, enhance temperature responses of WSNs, thereby linking WSN function with thermoregulation for the first time. Rather than acting within WSNs, we-unexpectedly-find TRPM2 to temperature-dependently increase synaptic drive onto WSNs by disinhibition. Our data emphasize a network-based interoceptive paradigm that likely plays a key role in encoding body temperature and that may facilitate integration of diverse inputs into thermoregulatory pathways.


Subject(s)
Body Temperature Regulation/genetics , Neural Inhibition/genetics , Neurons/metabolism , Preoptic Area/metabolism , TRPM Cation Channels/genetics , Thermosensing/genetics , Animals , Body Temperature , Body Temperature Regulation/physiology , Interoception/physiology , Mice , Mice, Knockout , Preoptic Area/cytology , Synapses , TRPM Cation Channels/metabolism
2.
Physiol Res ; 70(3): 363-381, 2021 07 12.
Article in English | MEDLINE | ID: mdl-33982589

ABSTRACT

The discovery of the role of the transient receptor potential ankyrin 1 (TRPA1) channel as a polymodal detector of cold and pain-producing stimuli almost two decades ago catalyzed the consequent identification of various vertebrate and invertebrate orthologues. In different species, the role of TRPA1 has been implicated in numerous physiological functions, indicating that the molecular structure of the channel exhibits evolutionary flexibility. Until very recently, information about the critical elements of the temperature-sensing molecular machinery of thermosensitive ion channels such as TRPA1 had lagged far behind information obtained from mutational and functional analysis. Current developments in single-particle cryo-electron microscopy are revealing precisely how the thermosensitive channels operate, how they might be targeted with drugs, and at which sites they can be critically regulated by membrane lipids. This means that it is now possible to resolve a huge number of very important pharmacological, biophysical and physiological questions in a way we have never had before. In this review, we aim at providing some of the recent knowledge on the molecular mechanisms underlying the temperature sensitivity of TRPA1. We also demonstrate how the search for differences in temperature and chemical sensitivity between human and mouse TRPA1 orthologues can be a useful approach to identifying important domains with a key role in channel activation.


Subject(s)
Ankyrins/genetics , TRPA1 Cation Channel/genetics , Thermosensing/genetics , Animals , Ankyrins/physiology , Cold Temperature , Hot Temperature , Humans , Mice , TRPA1 Cation Channel/physiology , Thermosensing/physiology
3.
PLoS Genet ; 17(1): e1009290, 2021 01.
Article in English | MEDLINE | ID: mdl-33493201

ABSTRACT

Temperature impacts plant immunity and growth but how temperature intersects with endogenous pathways to shape natural variation remains unclear. Here we uncover variation between Arabidopsis thaliana natural accessions in response to two non-stress temperatures (22°C and 16°C) affecting accumulation of the thermoresponsive stress hormone salicylic acid (SA) and plant growth. Analysis of differentially responding A. thaliana accessions shows that pre-existing SA provides a benefit in limiting infection by Pseudomonas syringae pathovar tomato DC3000 bacteria at both temperatures. Several A. thaliana genotypes display a capacity to mitigate negative effects of high SA on growth, indicating within-species plasticity in SA-growth tradeoffs. An association study of temperature x SA variation, followed by physiological and immunity phenotyping of mutant and over-expression lines, identifies the transcription factor bHLH059 as a temperature-responsive SA immunity regulator. Here we reveal previously untapped diversity in plant responses to temperature and a way forward in understanding the genetic architecture of plant adaptation to changing environments.


Subject(s)
Arabidopsis Proteins/genetics , Arabidopsis/genetics , Plant Immunity/genetics , Thermosensing/genetics , Arabidopsis/immunology , Arabidopsis/physiology , Arabidopsis Proteins/immunology , Gene Expression Regulation, Plant/drug effects , Plant Diseases/genetics , Plant Diseases/immunology , Plant Leaves/genetics , Plant Leaves/growth & development , Pseudomonas syringae/genetics , Salicylic Acid/metabolism , Signal Transduction/drug effects , Temperature , Thermosensing/immunology , Transcription Factors/genetics
4.
Nat Commun ; 11(1): 4169, 2020 08 20.
Article in English | MEDLINE | ID: mdl-32820172

ABSTRACT

Sensing and responding to temperature is crucial in biology. The TRPV1 ion channel is a well-studied heat-sensing receptor that is also activated by vanilloid compounds, including capsaicin. Despite significant interest, the molecular underpinnings of thermosensing have remained elusive. The TRPV1 S1-S4 membrane domain couples chemical ligand binding to the pore domain during channel gating. Here we show that the S1-S4 domain also significantly contributes to thermosensing and couples to heat-activated gating. Evaluation of the isolated human TRPV1 S1-S4 domain by solution NMR, far-UV CD, and intrinsic fluorescence shows that this domain undergoes a non-denaturing temperature-dependent transition with a high thermosensitivity. Further NMR characterization of the temperature-dependent conformational changes suggests the contribution of the S1-S4 domain to thermosensing shares features with known coupling mechanisms between this domain with ligand and pH activation. Taken together, this study shows that the TRPV1 S1-S4 domain contributes to TRPV1 temperature-dependent activation.


Subject(s)
Hot Temperature , Ion Channel Gating/physiology , TRPV Cation Channels/metabolism , Thermosensing/physiology , Binding Sites/genetics , Capsaicin/chemistry , Capsaicin/metabolism , Circular Dichroism , Humans , Ion Channel Gating/genetics , Magnetic Resonance Spectroscopy , Models, Molecular , Protein Binding , Protein Domains , TRPV Cation Channels/chemistry , TRPV Cation Channels/genetics , Thermosensing/genetics
5.
Nature ; 583(7818): 825-829, 2020 07.
Article in English | MEDLINE | ID: mdl-32669706

ABSTRACT

Temperature is a key factor in the growth and development of all organisms1,2. Plants have to interpret temperature fluctuations, over hourly to monthly timescales, to align their growth and development with the seasons. Much is known about how plants respond to acute thermal stresses3,4, but the mechanisms that integrate long-term temperature exposure remain unknown. The slow, winter-long upregulation of VERNALIZATION INSENSITIVE 3 (VIN3)5-7, a PHD protein that functions with Polycomb repressive complex 2 to epigenetically silence FLOWERING LOCUS C (FLC) during vernalization, is central to plants interpreting winter progression5,6,8-11. Here, by a forward genetic screen, we identify two dominant mutations of the transcription factor NTL8 that constitutively activate VIN3 expression and alter the slow VIN3 cold induction profile. In the wild type, the NTL8 protein accumulates slowly in the cold, and directly upregulates VIN3 transcription. Through combining computational simulation and experimental validation, we show that a major contributor to this slow accumulation is reduced NTL8 dilution due to slow growth at low temperatures. Temperature-dependent growth is thus exploited through protein dilution to provide the long-term thermosensory information for VIN3 upregulation. Indirect mechanisms involving temperature-dependent growth, in addition to direct thermosensing, may be widely relevant in long-term biological sensing of naturally fluctuating temperatures.


Subject(s)
Arabidopsis/growth & development , Cold Temperature , Thermosensing/physiology , Arabidopsis/genetics , Arabidopsis/physiology , Arabidopsis Proteins/genetics , Arabidopsis Proteins/metabolism , DNA-Binding Proteins/genetics , DNA-Binding Proteins/metabolism , MADS Domain Proteins/genetics , Models, Biological , Plant Roots/metabolism , Thermosensing/genetics , Transcription Factors/genetics , Transcription Factors/metabolism
6.
Neuron ; 106(5): 830-841.e3, 2020 06 03.
Article in English | MEDLINE | ID: mdl-32208171

ABSTRACT

Humans detect skin temperature changes that are perceived as warm or cool. Like humans, mice report forepaw skin warming with perceptual thresholds of less than 1°C and do not confuse warm with cool. We identify two populations of polymodal C-fibers that signal warm. Warm excites one population, whereas it suppresses the ongoing cool-driven firing of the other. In the absence of the thermosensitive TRPM2 or TRPV1 ion channels, warm perception was blunted, but not abolished. In addition, trpv1:trpa1:trpm3-/- triple-mutant mice that cannot sense noxious heat detected skin warming, albeit with reduced sensitivity. In contrast, loss or local pharmacological silencing of the cool-driven TRPM8 channel abolished the ability to detect warm. Our data are not reconcilable with a labeled line model for warm perception, with receptors firing only in response to warm stimuli, but instead support a conserved dual sensory model to unambiguously detect skin warming in vertebrates.


Subject(s)
Nerve Fibers, Unmyelinated/physiology , Nociception/physiology , Perception/physiology , TRPM Cation Channels/genetics , TRPV Cation Channels/genetics , Thermosensing/genetics , Animals , Mice , Mice, Knockout , Mutation , Sensory Thresholds , Thermosensing/physiology , Upper Extremity
7.
Mol Microbiol ; 113(3): 588-592, 2020 03.
Article in English | MEDLINE | ID: mdl-31971637

ABSTRACT

An outstanding question regards the ability of organisms to sense their environments and respond in a suitable way. Pathogenic bacteria in particular exploit host-temperature sensing as a cue for triggering virulence gene expression. This micro-review does not attempt to fully cover the field of bacterial thermosensors and in detail describe each identified case. Instead, the review focus on the time-period at the end of the 1990's and beginning of the 2000's when several key discoveries were made, identifying protein, DNA and RNA as potential thermosensors controlling gene expression in several different bacterial pathogens in general and on the prfA thermosensor of Listeria monocytogenes in particular.


Subject(s)
Bacteria/metabolism , Host Microbial Interactions/physiology , Thermoreceptors/physiology , Bacteria/pathogenicity , Bacterial Proteins/genetics , Bacterial Proteins/metabolism , Gene Expression Regulation, Bacterial/genetics , Hot Temperature , Listeria monocytogenes/metabolism , Peptide Termination Factors/genetics , Peptide Termination Factors/metabolism , RNA/genetics , RNA/metabolism , Thermoreceptors/metabolism , Thermosensing/genetics , Thermosensing/physiology , Trans-Activators/metabolism , Virulence/genetics , Virulence Factors/genetics
8.
Genes Brain Behav ; 19(5): e12640, 2020 06.
Article in English | MEDLINE | ID: mdl-31925906

ABSTRACT

Mice selectively bred for high methamphetamine (MA) drinking (MAHDR), compared with mice bred for low MA drinking (MALDR), exhibit greater sensitivity to MA reward and insensitivity to aversive and hypothermic effects of MA. Previous work identified the trace amine-associated receptor 1 gene (Taar1) as a quantitative trait gene for MA intake that also impacts thermal response to MA. All MAHDR mice are homozygous for the mutant Taar1 m1J allele, whereas all MALDR mice possess at least one copy of the reference Taar1 + allele. To determine if their differential sensitivity to MA-induced hypothermia extends to drugs of similar and different classes, we examined sensitivity to the hypothermic effect of the stimulant cocaine, the amphetamine-like substance 3,4-methylenedioxymethamphetamine (MDMA), and the opioid morphine in these lines. The lines did not differ in thermal response to cocaine, only MALDR mice exhibited a hypothermic response to MDMA, and MAHDR mice were more sensitive to the hypothermic effect of morphine than MALDR mice. We speculated that the µ-opioid receptor gene (Oprm1) impacts morphine response, and genotyped the mice tested for morphine-induced hypothermia. We report genetic linkage between Taar1 and Oprm1; MAHDR mice more often inherit the Oprm1 D2 allele and MALDR mice more often inherit the Oprm1 B6 allele. Data from a family of recombinant inbred mouse strains support the influence of Oprm1 genotype, but not Taar1 genotype, on thermal response to morphine. These results nominate Oprm1 as a genetic risk factor for morphine-induced hypothermia, and provide additional evidence for a connection between drug preference and drug thermal response.


Subject(s)
Amphetamine-Related Disorders/genetics , Analgesics, Opioid/pharmacology , Dopamine Agents/pharmacology , Hypothermia/genetics , Receptors, G-Protein-Coupled/genetics , Receptors, Opioid, mu/genetics , Amphetamine-Related Disorders/physiopathology , Animals , Cocaine/pharmacology , Female , Genotype , Male , Methamphetamine/pharmacology , Mice , Mice, Inbred Strains , Morphine/pharmacology , N-Methyl-3,4-methylenedioxyamphetamine/pharmacology , Thermosensing/drug effects , Thermosensing/genetics
9.
Mol Microbiol ; 112(6): 1814-1830, 2019 12.
Article in English | MEDLINE | ID: mdl-31556180

ABSTRACT

The adaptation of microorganisms to different temperatures is an advantage in habitats with steadily changing conditions and raises the question about temperature sensing. Here we show that in the filamentous fungus Aspergillus nidulans, the hybrid histidine kinase TcsB and phytochrome are involved in temperature-induced gene transcription. Temperature-activated phytochrome fed the signal into the HOG MAP kinase pathway. There is evidence that the photoreceptor phytochrome fulfills a temperature sensory role in plants and bacteria. The effects in plants are based on dark reversion from the active form of phytochrome, Pfr, to the inactive form, Pr. Elevated temperature leads to higher dark reversion rates, and hence, temperature sensing depends on light. In A. nidulans and in Alternaria alternata, the temperature response was light-independent. In order to understand the primary temperature response of phytochrome, we performed spectral analyses of recombinant FphA from both fungi. Spectral properties after heat stress resembled the spectrum of free biliverdin, suggesting conformational changes and a softening of the binding pocket of phytochrome, possibly mimicking photoactivation. We propose a novel function for fungal phytochrome as temperature sensor.


Subject(s)
Histidine Kinase/metabolism , Membrane Proteins/metabolism , Protein Kinases/metabolism , Thermosensing/physiology , Aspergillus nidulans/genetics , Aspergillus nidulans/metabolism , Fungal Proteins/metabolism , Light , Membrane Proteins/physiology , Mitogen-Activated Protein Kinases/metabolism , Phytochrome/metabolism , Protein Kinases/physiology , Temperature , Thermosensing/genetics
10.
Cell ; 178(6): 1375-1386.e11, 2019 09 05.
Article in English | MEDLINE | ID: mdl-31474366

ABSTRACT

In search of the molecular identities of cold-sensing receptors, we carried out an unbiased genetic screen for cold-sensing mutants in C. elegans and isolated a mutant allele of glr-3 gene that encodes a kainate-type glutamate receptor. While glutamate receptors are best known to transmit chemical synaptic signals in the CNS, we show that GLR-3 senses cold in the peripheral sensory neuron ASER to trigger cold-avoidance behavior. GLR-3 transmits cold signals via G protein signaling independently of its glutamate-gated channel function, suggesting GLR-3 as a metabotropic cold receptor. The vertebrate GLR-3 homolog GluK2 from zebrafish, mouse, and human can all function as a cold receptor in heterologous systems. Mouse DRG sensory neurons express GluK2, and GluK2 knockdown in these neurons suppresses their sensitivity to cold but not cool temperatures. Our study identifies an evolutionarily conserved cold receptor, revealing that a central chemical receptor unexpectedly functions as a thermal receptor in the periphery.


Subject(s)
Caenorhabditis elegans Proteins/physiology , Caenorhabditis elegans/genetics , Receptors, Glutamate/physiology , Receptors, Kainic Acid/physiology , Receptors, Metabotropic Glutamate/physiology , Thermosensing/physiology , Animals , CHO Cells , Caenorhabditis elegans Proteins/genetics , Cold Temperature , Cricetulus , Humans , Mice , Neurons/metabolism , Receptors, Glutamate/genetics , Receptors, Kainic Acid/genetics , Receptors, Metabotropic Glutamate/genetics , Thermosensing/genetics
11.
Theor Appl Genet ; 132(6): 1721-1732, 2019 Jun.
Article in English | MEDLINE | ID: mdl-30778635

ABSTRACT

Thermosensitive genic male sterile (TGMS) lines favored heterosis exploitation in two-line hybrid rice. TMS5, a member of RNase Z cleavages the UbL40 mRNAs, plays an important role in two-line hybrid rice. Here, we identified a new TGMS mutant 93-11s, which lost two amino acids in the first exon of TMS5 gene and caused thermosensitive genic male sterility in rice. The tms5-2 cannot process mRNAs of the ubiquitin fusion ribosomal protein L40 (UbL40) and hence cause the mRNAs accumulation in restrictive temperature. Further, we identified a nucleus-localized bHLH transcription factor OsbHLH138, which can form the basic helix-loop-helix structure and bind the core region of tms5-2 promoter sequences by bHLH domain, and activate expression of tms5-2 by the acidic amino acid-rich domain. These results indicate a novel mechanism for the tms5-2 regulating thermosensitive male sterility of rice. By altering expression of OsbHLH138, we can regulate the expression level of TMS5 and the accumulation of UbL40 mRNAs to command the male fertility in different temperatures. The identification of OsbHLH138 provides breeders a new choice for development of TGMS rice lines, which will favor the sustainable development of two-line hybrid rice.


Subject(s)
Oryza/genetics , Plant Infertility/genetics , Plant Proteins/genetics , Thermosensing/genetics , Transcription Factors/genetics , Plant Breeding , Temperature
12.
Proc Natl Acad Sci U S A ; 116(9): 3811-3816, 2019 02 26.
Article in English | MEDLINE | ID: mdl-30755524

ABSTRACT

The ability to detect environmental cold serves as an important survival tool. The sodium channels NaV1.8 and NaV1.9, as well as the TRP channel Trpm8, have been shown to contribute to cold sensation in mice. Surprisingly, transcriptional profiling shows that NaV1.8/NaV1.9 and Trpm8 are expressed in nonoverlapping neuronal populations. Here we have used in vivo GCaMP3 imaging to identify cold-sensing populations of sensory neurons in live mice. We find that ∼80% of neurons responsive to cold down to 1 °C do not express NaV1.8, and that the genetic deletion of NaV1.8 does not affect the relative number, distribution, or maximal response of cold-sensitive neurons. Furthermore, the deletion of NaV1.8 had no observable effect on transient cold-induced (≥5 °C) behaviors in mice, as measured by the cold-plantar, cold-plate (5 and 10 °C), or acetone tests. In contrast, nocifensive-like behavior to extreme cold-plate stimulation (-5 °C) was completely absent in mice lacking NaV1.8. Fluorescence-activated cell sorting (FACS) and subsequent microarray analysis of sensory neurons activated at 4 °C identified an enriched repertoire of ion channels, which include the Trp channel Trpm8 and potassium channel Kcnk9, that are potentially required for cold sensing above freezing temperatures in mouse DRG neurons. These data demonstrate the complexity of cold-sensing mechanisms in mouse sensory neurons, revealing a principal role for NaV1.8-negative neurons in sensing both innocuous and acute noxious cooling down to 1 °C, while NaV1.8-positive neurons are likely responsible for the transduction of prolonged extreme cold temperatures, where tissue damage causes pan-nociceptor activation.


Subject(s)
NAV1.8 Voltage-Gated Sodium Channel/genetics , Potassium Channels/genetics , Sensory Receptor Cells/physiology , TRPM Cation Channels/genetics , Animals , Cold Temperature , Ganglia, Spinal/diagnostic imaging , Ganglia, Spinal/metabolism , Ganglia, Spinal/physiology , Mice , Nociceptors/metabolism , Nociceptors/physiology , Sensory Receptor Cells/metabolism , Thermosensing/genetics
13.
Nat Commun ; 10(1): 140, 2019 01 11.
Article in English | MEDLINE | ID: mdl-30635559

ABSTRACT

Ambient temperature sensing by phytochrome B (PHYB) in Arabidopsis is thought to operate mainly at night. Here we show that PHYB plays an equally critical role in temperature sensing during the daytime. In daytime thermosensing, PHYB signals primarily through the temperature-responsive transcriptional regulator PIF4, which requires the transcriptional activator HEMERA (HMR). HMR does not regulate PIF4 transcription, instead, it interacts directly with PIF4, to activate the thermoresponsive growth-relevant genes and promote warm-temperature-dependent PIF4 accumulation. A missense allele hmr-22, which carries a loss-of-function D516N mutation in HMR's transcriptional activation domain, fails to induce the thermoresponsive genes and PIF4 accumulation. Both defects of hmr-22 could be rescued by expressing a HMR22 mutant protein fused with the transcriptional activation domain of VP16, suggesting a causal relationship between HMR-mediated activation of PIF4 target-genes and PIF4 accumulation. Together, this study reveals a daytime PHYB-mediated thermosensing mechanism, in which HMR acts as a necessary activator for PIF4-dependent induction of temperature-responsive genes and PIF4 accumulation.


Subject(s)
Arabidopsis Proteins/metabolism , Arabidopsis/physiology , Basic Helix-Loop-Helix Transcription Factors/metabolism , Phytochrome B/metabolism , Thermosensing/physiology , Transcription Factors/metabolism , Arabidopsis Proteins/genetics , Climate Change , Cryptochromes/metabolism , Gene Expression Regulation, Plant/genetics , Phytochrome B/genetics , Signal Transduction/genetics , Temperature , Thermosensing/genetics , Transcription Factors/genetics , Transcriptional Activation/genetics
14.
Handb Clin Neurol ; 156: 129-133, 2018.
Article in English | MEDLINE | ID: mdl-30454586

ABSTRACT

Classic lesion and physiology experiments identified the hypothalamic preoptic area as a pivotal region in the regulation of temperature homeostasis. The preoptic area can sense changes in local temperature, receives information about ambient temperature, contributes to fever, and can affect thermoregulation in response to several biologic signals. Electrophysiologic studies indicate that these actions are mediated by a neuronal circuitry that comprises temperature-sensitive as well as temperature-insensitive neurons. Little is known on the molecules that may be required for central thermosensation and much of the efforts towards their identification was done for warm-sensitive neurons. Here we summarize the current knowledge on the subject as well as what the search for these molecules revealed about warm-sensitive neurons.


Subject(s)
Body Temperature Regulation/genetics , Brain/cytology , Sensory Receptor Cells/physiology , Thermosensing/genetics , Animals , Brain-Derived Neurotrophic Factor/genetics , Brain-Derived Neurotrophic Factor/metabolism , Humans , Pituitary Adenylate Cyclase-Activating Polypeptide/genetics , Pituitary Adenylate Cyclase-Activating Polypeptide/metabolism , Prostaglandins/genetics , Prostaglandins/metabolism , TRPC Cation Channels/genetics , TRPC Cation Channels/metabolism
15.
Sci Rep ; 8(1): 15679, 2018 10 24.
Article in English | MEDLINE | ID: mdl-30356061

ABSTRACT

Genomes provide a platform for storage of chemical information that must be stable under the context in which an organism thrives. The 2'-deoxyguanosine (G) nucleotide has the potential to provide additional chemical information beyond its Watson-Crick base-pairing capacity. Sequences with four or more runs of three G nucleotides each are potential G-quadruplex forming sequences (PQSs) that can adopt G-quadruplex folds. Herein, we analyzed sequenced genomes from the NCBI database to determine the PQS densities of the genome sequences. First, we found organisms with large genomes, including humans, alligators, and maize, have similar densities of PQSs (~300 PQSs/Mbp), and the genomes are significantly enriched in PQSs with more than four G tracks. Analysis of microorganism genomes found a greater diversity of PQS densities. In general, PQS densities positively tracked with the GC% of the genome. Exceptions to this observation were the genomes from thermophiles that had many more PQSs than expected by random chance. Analysis of the location of these PQSs in annotated genomes from the order Thermales showed these G-rich sequences to be randomly distributed; in contrast, in the order Deinococcales the PQSs were enriched and biased around transcription start sites of genes. Four representative PQSs, two each from the Thermales and Deinococcales, were studied by biophysical methods to establish the ability of them to fold to G-quadruplexes. The experiments found the two PQSs in the Thermales did not adopt G-quadruplex folds, while the two most common in the Deinococcales adopted stable parallel-stranded G-quadruplexes. The findings lead to a hypothesis that thermophilic organisms are enriched with PQSs as an unavoidable consequence to stabilize thermally their genomes to live at high temperature; in contrast, the genomes from stress-resistant bacteria found in the Deinococcales may utilize PQSs for gene regulatory purposes.


Subject(s)
Deinococcus/genetics , G-Quadruplexes , Genes, Bacterial/genetics , Thermosensing/genetics , Algorithms , Base Sequence/genetics , Biodiversity , Databases, Genetic , Genome Size/genetics , Guanine/chemistry , Humans , Oxidation-Reduction , Surveys and Questionnaires , Transcription Initiation Site
16.
Genes Genomics ; 40(3): 315-320, 2018 03.
Article in English | MEDLINE | ID: mdl-29892801

ABSTRACT

Olive flounder (Paralichthys olivaceus) is one of the most economically important aquaculture fish. However, its production is often affected by various diseases, especially viral hemorrhagic septicemia virus (VHSV) that cause serious economic losses. In this study, we sequenced the whole transcriptome of the P. olivaceus using Illumina RNA-sEq. De novo assembly of control and virus-infected cDNA libraries of head kidney at 13 and 20 °C was accomplished with 2,007,532,438 raw reads, resulting in 244,578 unigenes with an average length of 533 bp and found 65,535 candidate coding unigenes with homology to other species by BLAST analysis. DEG analysis among control and virus-infected head kidney samples of 13 and 20 °C revealed that 1290 up-regulated and 162 down-regulated genes (p ≤ 0.01), linked to metabolism, virulence factors, adhesion and immune-response. We constructed an expressed gene catalog for the P. olivaceus to serve as a resource for marine environmental genomic and immuno-genetic/genomic studies focused on uncovering the molecular mechanisms underlying the responses of P. olivaceus to VHSV under different temperature.


Subject(s)
Flounder/genetics , Flounder/immunology , Animals , Base Composition , Fish Diseases/immunology , Gene Expression Profiling/methods , Head Kidney , Novirhabdovirus/pathogenicity , Temperature , Thermosensing/genetics , Transcriptome/genetics
17.
Int J Mol Sci ; 19(5)2018 May 02.
Article in English | MEDLINE | ID: mdl-29724073

ABSTRACT

A “two-line hybrid system” was developed, previously based on thermo-sensitive cytoplasmic male sterility in Aegilops kotschyi (K-TCMS), which can be used in wheat breeding. The K-TCMS line exhibits complete male sterility and it can be used to produce hybrid wheat seeds during the normal wheat-growing season; it propagates via self-pollination at high temperatures. Isobaric tags for relative and absolute quantification-based quantitative proteome and bioinformatics analyses of the TCMS line KTM3315A were conducted under different fertility conditions to understand the mechanisms of fertility conversion in the pollen development stages. In total, 4639 proteins were identified, the differentially abundant proteins that increased/decreased in plants with differences in fertility were mainly involved with energy metabolism, starch and sucrose metabolism, phenylpropanoid biosynthesis, protein synthesis, translation, folding, and degradation. Compared with the sterile condition, many of the proteins that related to energy and phenylpropanoid metabolism increased during the anther development stage. Thus, we suggest that energy and phenylpropanoid metabolism pathways are important for fertility conversion in K-TCMS wheat. These findings provide valuable insights into the proteins involved with anther and pollen development, thereby, helping to further understand the mechanism of TCMS in wheat.


Subject(s)
Flowers/metabolism , Plant Proteins/analysis , Pollen/genetics , Proteomics , Thermosensing/genetics , Triticum/growth & development , Cytoplasm , Databases, Protein , Gene Ontology , Plant Infertility/genetics , Plant Proteins/genetics , Plants, Genetically Modified/genetics , Plants, Genetically Modified/growth & development , Poaceae , Pollen/metabolism , Proteome/analysis , Proteome/genetics , Triticum/genetics
18.
Nature ; 555(7698): 662-666, 2018 03 29.
Article in English | MEDLINE | ID: mdl-29539642

ABSTRACT

Acute pain represents a crucial alarm signal to protect us from injury. Whereas the nociceptive neurons that convey pain signals were described more than a century ago, the molecular sensors that detect noxious thermal or mechanical insults have yet to be fully identified. Here we show that acute noxious heat sensing in mice depends on a triad of transient receptor potential (TRP) ion channels: TRPM3, TRPV1, and TRPA1. We found that robust somatosensory heat responsiveness at the cellular and behavioural levels is observed only if at least one of these TRP channels is functional. However, combined genetic or pharmacological elimination of all three channels largely and selectively prevents heat responses in both isolated sensory neurons and rapidly firing C and Aδ sensory nerve fibres that innervate the skin. Strikingly, Trpv1-/-Trpm3-/-Trpa1-/- triple knockout (TKO) mice lack the acute withdrawal response to noxious heat that is necessary to avoid burn injury, while showing normal nociceptive responses to cold or mechanical stimuli and a preserved preference for moderate temperatures. These findings indicate that the initiation of the acute heat-evoked pain response in sensory nerve endings relies on three functionally redundant TRP channels, representing a fault-tolerant mechanism to avoid burn injury.


Subject(s)
Hot Temperature/adverse effects , Nociceptive Pain/physiopathology , TRPA1 Cation Channel/metabolism , TRPM Cation Channels/metabolism , TRPV Cation Channels/metabolism , Thermosensing/physiology , Animals , Burns/physiopathology , Burns/prevention & control , Cold Temperature/adverse effects , Female , Male , Mice , Mice, Knockout , Nerve Endings/physiology , Nerve Fibers/physiology , Nociception/physiology , Sensory Receptor Cells/physiology , Skin/innervation , Skin/physiopathology , TRPA1 Cation Channel/deficiency , TRPA1 Cation Channel/genetics , TRPM Cation Channels/deficiency , TRPM Cation Channels/genetics , TRPV Cation Channels/deficiency , TRPV Cation Channels/genetics , Thermosensing/genetics
19.
Environ Entomol ; 47(1): 204-209, 2018 02 08.
Article in English | MEDLINE | ID: mdl-29304195

ABSTRACT

Anthropogenic climate change and global warming are expected to alter the geographic distribution and abundance of many ectothermic species, which will increase the invasion of new areas by exotic species. To survive in variable or fluctuating temperature conditions, insects require sensitive thermal sensory mechanisms to detect external thermal stimuli and induce the appropriate behavioral and physiological responses. TRPA, a thermal-activated transient receptor potential (TRP) family ion channel, is essential for thermotaxis in insects. Here, we investigated the potential role of BtTRPA in short-term and long-term thermal stress in Bemisia tabaci Mediterranean (Gennadius; Hemiptera: Aleyrodidae). We found that BtTRPA was mainly expressed in the head, where the antennae are located. Under short-term thermal stress, the BtTRPA gene was robustly expressed after exposure to acute low or high temperatures, BtTRPA expression reached the highest levels after exposure to 0°C for 3 h and 40°C for 5 h, but was relatively low after exposure to milder stimuli (12 and 35°C). These results demonstrated that BtTRPA could discriminate between innocuous and noxious temperature stimuli. Under long-term thermal stress, the highest expression level of BtTRPA occurred at G1 exposed to mild innocuous temperature of 21 and 31°C, along with BtTRPA sharply increased and peaked in adult females, implying that mild innocuous long-term thermal exposure could cause transgenerational expression effects to enhance the ability of offspring to cope with the same stress. This study demonstrates that the channel BtTRPA is important in temperature sensing and provides a molecular basis for thermosensation regulation in response to varied environmental temperature in B. tabaci Mediterranean.


Subject(s)
Hemiptera/physiology , TRPA1 Cation Channel/genetics , Thermosensing/genetics , Animals , Hemiptera/genetics , Hemiptera/metabolism , Hot Temperature , TRPA1 Cation Channel/metabolism
20.
Mol Microbiol ; 106(6): 938-948, 2017 Dec.
Article in English | MEDLINE | ID: mdl-28976047

ABSTRACT

In yeast target of rapamycin complex 1 (TORC1) and Tap42-associated phosphatases regulate expression of genes involved in nitrogen limitation response and the nitrogen discrimination pathway. However, it remains unclear whether TORC1 and the phosphatases are required for sensing nitrogen conditions. Utilizing temperature sensitive mutants of tor2 and tap42, we examined the role of TORC1 and Tap42 in nuclear entry of Gln3, a key transcription factor in yeast nitrogen metabolism, in response to changes in nitrogen conditions. Our data show that TORC1 is essential for Gln3 nuclear entry upon nitrogen limitation and downshift in nitrogen quality. However, Tap42-associated phosphatases are required only under nitrogen limitation condition. In cells grown in poor nitrogen medium, the nitrogen permease reactivator kinase (Npr1) inhibits TORC1 activity and alters its association with Tap42, rendering Tap42-associated phosphatases unresponsive to nitrogen limitation. These findings demonstrate a direct role for TORC1 and Tap42-associated phosphatases in sensing nitrogen conditions and unveil an Npr1-dependent mechanism that controls TORC1 and the phosphatases in response to changes in nitrogen quality.


Subject(s)
Adaptor Proteins, Signal Transducing/metabolism , Mechanistic Target of Rapamycin Complex 1/metabolism , Nitrogen/metabolism , Phosphoric Monoester Hydrolases/metabolism , Saccharomyces cerevisiae Proteins/metabolism , Saccharomyces cerevisiae/metabolism , Adaptor Proteins, Signal Transducing/genetics , Cell Cycle Proteins/genetics , Cell Cycle Proteins/metabolism , Gene Expression Regulation, Fungal , Mechanistic Target of Rapamycin Complex 1/antagonists & inhibitors , Mutation , Nitrogen/deficiency , Phosphatidylinositol 3-Kinases/genetics , Phosphatidylinositol 3-Kinases/metabolism , Protein Kinases/pharmacology , Saccharomyces cerevisiae/genetics , Saccharomyces cerevisiae Proteins/genetics , Saccharomyces cerevisiae Proteins/pharmacology , Thermosensing/genetics , Transcription Factors/genetics , Transcription Factors/metabolism
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