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1.
J Inorg Biochem ; 230: 111776, 2022 05.
Article in English | MEDLINE | ID: mdl-35247853

ABSTRACT

One of the resistance mechanisms of superbugs is to hydrolyze antibiotics by producing metallo-ß-lactamases (MßLs). To verify how MßLs evolved to increase in activity in response to various ß-lactam antibiotics, the mutation and evolution of CphA from Aeromonas hydrophila (Zn2+-dependent MßL) was investigated in a medium with a continuous biapenem (BIA) concentration gradient. The results showed that a single-base mutation M1 and two frameshift mutations M3 and M4 were observed. Furthermore, a nonsense mutation M2 was observed. Compared with wild-type (WT), the minimum inhibitory concentrations (MICs) of the M3 and M4 increased by more than 128 times, and the catalytic efficiency of BIA by the M3 and M4 increased by 752% and 376% respectively. In the mutants, the carbon skeleton migration caused by the outward motion of the loop3 near the entrance of the binding pocket increased the cavity volume of the binding pocket and was more conducive to the entry and expulsion of BIA and its hydrolytic product in the binding pocket. The conformational change effect originated from mutations is transmitted to the binding pocket through the interactions between the side chain amino acid residues of the C-terminal and those of the loop3, thus affecting the binding and hydrolysis capability of the mutants to BIA in the binding pocket. All these indicated that during the repeated drug-endurance and -resistance, the CphA completed its mutation and conformational change and evolved to the mutants with a more delicate structure and stronger hydrolysis ability by a genetic mutation.


Subject(s)
Thienamycins , beta-Lactamases , Anti-Bacterial Agents , Bacterial Proteins/chemistry , Mutation , Thienamycins/chemistry , Thienamycins/metabolism , beta-Lactamases/metabolism
2.
Curr Microbiol ; 75(8): 1084-1089, 2018 Aug.
Article in English | MEDLINE | ID: mdl-29687150

ABSTRACT

The spread of antibiotic resistance is rapidly threatening the effectiveness of antibiotics in the clinical setting. Many infections are being caused by known and unknown pathogenic bacteria that are resistant to many or all antibiotics currently available. Empedobacter falsenii is a nosocomial pathogen that can cause human infections. E. falsenii Wf282 strain was found to be resistant to many antibiotics, including carbapenems and colistin. Whole-genome shotgun sequencing of the strain was performed, and distinct features were identified. A novel metallo-ß-lactamase, named EBR-2, was found, suggesting a potential role of E. falsenii as a reservoir of ß-lactamases and other resistance determinants also found in its genome. The EBR-2 protein showed the highest catalytic efficiency for penicillin G as compared to meropenem and ampicillin and was unable to hydrolyze cefepime. The results described in this work broaden the current understanding of the role of ß-lactamases in the Flavobacteriaceae family and suggest that E. falsenii Wf282 may be a reservoir of these novel resistance determinants.


Subject(s)
Drug Resistance, Multiple, Bacterial/genetics , Flavobacteriaceae , beta-Lactamases/genetics , Amino Acid Sequence , Ampicillin/metabolism , Anti-Bacterial Agents/metabolism , Anti-Bacterial Agents/pharmacology , Cefepime , Cephalosporins/metabolism , Cross Infection/microbiology , Flavobacteriaceae/drug effects , Flavobacteriaceae/genetics , Flavobacteriaceae/metabolism , Genome, Bacterial/genetics , Humans , Meropenem , Microbial Sensitivity Tests , Penicillin G/metabolism , Thienamycins/metabolism
3.
Phys Chem Chem Phys ; 20(9): 6409-6420, 2018 Feb 28.
Article in English | MEDLINE | ID: mdl-29442101

ABSTRACT

The mechanism of substrate hydrolysis of New Delhi metallo-ß-lactamase 1 (NDM-1) has been reported, but the process in which NDM-1 captures and transports the substrate into its active center remains unknown. In this study, we investigated the process of the substrate entry into the NDM-1 activity center through long unguided molecular dynamics simulations using meropenem as the substrate. A total of 550 individual simulations were performed, each of which for 200 ns, and 110 of them showed enzyme-substrate binding events. The results reveal three categories of relatively persistent and noteworthy enzyme-substrate binding configurations, which we call configurations A, B, and C. We performed binding free energy calculations of the enzyme-substrate complexes of different configurations using the molecular mechanics Poisson-Boltzmann surface area method. The role of each residue of the active site in binding the substrate was investigated using energy decomposition analysis. The simulated trajectories provide a continuous atomic-level view of the entire binding process, revealing potentially valuable regions where the enzyme and the substrate interact persistently and five possible pathways of the substrate entering into the active center, which were validated using well-tempered metadynamics. These findings provide important insights into the binding mechanism of meropenem to NDM-1, which may provide new prospects for the design of novel metallo-ß-lactamase inhibitors and enzyme-resistant antibiotics.


Subject(s)
Molecular Dynamics Simulation , Thienamycins/metabolism , beta-Lactamases/metabolism , Binding Sites , Catalytic Domain , Meropenem , Protein Binding , Substrate Specificity , Thermodynamics , Thienamycins/chemistry , beta-Lactamases/chemistry
4.
Nat Commun ; 8(1): 2242, 2017 12 21.
Article in English | MEDLINE | ID: mdl-29269938

ABSTRACT

New Delhi metallo-ß-lactamases (NDMs), the recent additions to metallo-ß-lactamases (MBLs), pose a serious public health threat due to its highly efficient hydrolysis of ß-lactam antibiotics and rapid worldwide dissemination. The MBL-hydrolyzing mechanism for carbapenems is less studied than that of penicillins and cephalosporins. Here, we report crystal structures of NDM-1 in complex with hydrolyzed imipenem and meropenem, at resolutions of 1.80-2.32 Å, together with NMR spectra monitoring meropenem hydrolysis. Three enzyme-intermediate/product derivatives, EI1, EI2, and EP, are trapped in these crystals. Our structural data reveal double-bond tautomerization from Δ2 to Δ1, absence of a bridging water molecule and an exclusive ß-diastereomeric product, all suggesting that the hydrolytic intermediates are protonated by a bulky water molecule incoming from the ß-face. These results strongly suggest a distinct mechanism of NDM-1-catalyzed carbapenem hydrolysis from that of penicillin or cephalosporin hydrolysis, which may provide a novel rationale for design of mechanism-based inhibitors.


Subject(s)
Carbapenems/metabolism , Cephalosporins/metabolism , Penicillins/metabolism , beta-Lactamases/metabolism , Crystallization , Crystallography, X-Ray , Escherichia coli , Hydrolysis , Imipenem/metabolism , Magnetic Resonance Spectroscopy , Meropenem , Models, Molecular , Thienamycins/metabolism
5.
J Antimicrob Chemother ; 72(11): 3070-3078, 2017 Nov 01.
Article in English | MEDLINE | ID: mdl-28961987

ABSTRACT

OBJECTIVES: Limited treatment options available for Mycobacterium abscessus infections include the parenteral ß-lactam antibiotics cefoxitin and imipenem, which show moderate in vitro activity. Other ß-lactam antibiotics (except meropenem) have no considerable in vitro activity, due to their rapid hydrolysis by a broad-spectrum ß-lactamase (Bla_Mab). We here addressed the impact of ß-lactamase production and ß-lactam in vitro stability on M. abscessus MIC results and determined the epidemiological cut-off (ECOFF) values of cefoxitin, imipenem and meropenem. METHODS: By LC high-resolution MS (LC-HRMS), we assessed the in vitro stability of cefoxitin, imipenem and meropenem. M. abscessus ATCC 19977 strain and its isogenic blaMab deletion mutant were used for MIC testing. Based on MIC distributions for M. abscessus clinical strains, we determined ECOFFs of cefoxitin, imipenem and meropenem. RESULTS: A functional Bla_Mab increased MICs of penicillins, ceftriaxone and meropenem. LC-HRMS data showed significant degradation of cefoxitin, imipenem and meropenem during standard antibiotic susceptibility testing procedures. MIC, MIC50 and ECOFF values of cefoxitin, imipenem and meropenem are influenced by incubation time. CONCLUSIONS: The results of our study support administration of imipenem, meropenem and cefoxitin, for treatment of patients infected with M. abscessus. Our findings on in vitro instability of imipenem, meropenem and cefoxitin explain the problematic correlation between in vitro susceptibility and in vivo activity of these antibiotics and question the clinical utility of susceptibility testing of these chemotherapeutic agents.


Subject(s)
Anti-Bacterial Agents/metabolism , Microbial Sensitivity Tests/methods , Mycobacterium abscessus/drug effects , beta-Lactamases/biosynthesis , beta-Lactams/metabolism , Anti-Bacterial Agents/pharmacology , Cefoxitin/metabolism , Cefoxitin/pharmacology , Cephalosporins/pharmacology , Drug Stability , Humans , Imipenem/metabolism , Imipenem/pharmacology , Meropenem , Mutation/drug effects , Mycobacterium Infections, Nontuberculous/drug therapy , Mycobacterium Infections, Nontuberculous/microbiology , Mycobacterium abscessus/enzymology , Mycobacterium abscessus/genetics , Thienamycins/metabolism , Thienamycins/pharmacology , beta-Lactams/pharmacology
6.
Phys Chem Chem Phys ; 19(20): 13111-13121, 2017 May 24.
Article in English | MEDLINE | ID: mdl-28489087

ABSTRACT

Emergence of antibiotic resistance due to New Delhi metallo-ß-lactamase (NDM-1) bacterial enzymes is of great concern due to their ability to hydrolyze a wide range of antibiotics. There are ongoing efforts to obtain the atomistic details of the hydrolysis mechanism in order to develop inhibitors for NDM-1. In particular, it remains elusive how drug molecules of different families of antibiotics are hydrolyzed by NDM-1 in an efficient manner. Here we report the detailed molecular mechanism of NDM-1 catalyzed hydrolysis of cephalexin, a cephalosporin family drug, and meropenem, a carbapenem family drug. This study employs molecular dynamics (MD) simulations using hybrid quantum mechanical/molecular mechanical (QM/MM) methods at the density functional theory (DFT) level, based on which reaction pathways and the associated free energies are obtained. We find that the mechanism and the free energy barrier for the ring-opening step are the same for both the drug molecules, while the subsequent protonation step differs. In particular, we observe that the mechanism of the protonation step depends on the R2 group of the drug molecule. Our simulations show that allylic carbon protonation occurs in the case of the cephalexin drug molecule where Lys211 is the proton donor, and the proton transfer occurs via a water chain formed (only) at the ring-opened intermediate structure. Based on the free energy profiles, the overall kinetics of drug hydrolysis is discussed. Finally, we show that the proposed mechanisms and free energy profiles could explain various experimental observations.


Subject(s)
Anti-Bacterial Agents/metabolism , Cephalexin/metabolism , Thienamycins/metabolism , beta-Lactamases/metabolism , Anti-Bacterial Agents/chemistry , Bacteria/enzymology , Binding Sites , Biocatalysis , Catalytic Domain , Cephalexin/chemistry , Hydrolysis , Kinetics , Meropenem , Molecular Dynamics Simulation , Quantum Theory , Thermodynamics , Thienamycins/chemistry , Water/chemistry
7.
BMC Biochem ; 18(1): 8, 2017 05 25.
Article in English | MEDLINE | ID: mdl-28545389

ABSTRACT

BACKGROUND: The carbapenem subclass of ß-lactams is among the most potent antibiotics available today. Emerging evidence shows that, unlike other subclasses of ß-lactams, carbapenems bind to and inhibit non-classical transpeptidases (L,D-transpeptidases) that generate 3 → 3 linkages in bacterial peptidoglycan. The carbapenems biapenem and tebipenem exhibit therapeutically valuable potencies against Mycobacterium tuberculosis (Mtb). RESULTS: Here, we report the X-ray crystal structures of Mtb L,D-transpeptidase-2 (LdtMt2) complexed with biapenem or tebipenem. Despite significant variations in carbapenem sulfur side chains, biapenem and tebipenem ultimately form an identical adduct that docks to the outer cavity of LdtMt2. We propose that this common adduct is an enzyme catalyzed decomposition of the carbapenem adduct by a mechanism similar to S-conjugate elimination by ß-lyases. CONCLUSION: The results presented here demonstrate biapenem and tebipenem bind to the outer cavity of LdtMt2, covalently inactivate the enzyme, and subsequently degrade via an S-conjugate elimination mechanism. We discuss structure based drug design based on the findings and propose that the S-conjugate elimination can be leveraged to design novel agents to deliver and locally release antimicrobial factors to act synergistically with the carbapenem carrier.


Subject(s)
Mycobacterium tuberculosis/enzymology , Peptidyl Transferases/antagonists & inhibitors , Carbapenems/metabolism , Crystallography, X-Ray , Drug Design , Peptidyl Transferases/chemistry , Protein Binding , Thienamycins/metabolism , beta-Lactams/chemistry , beta-Lactams/metabolism
8.
PLoS One ; 12(4): e0174908, 2017.
Article in English | MEDLINE | ID: mdl-28384185

ABSTRACT

Carbapenem-resistant Enterobacteriaceae (CRE) have spread globally and represent a serious and growing threat to public health. The introduction of rapid and sensitive methods for the detection of carbapenemase-producing bacteria is of increasing importance. The carbapenemase production can be detected using non-molecular methods (such as the modified Hodge test, the synergy test, the Carba NP test and the antibiotic hydrolysis assays) and DNA-based methods. In this study, we propose a modified version of a previously described meropenem hydrolysis assay (MHA) by MALDI-TOF MS for the phenotypic detection in 2h of carbapenemase-producing Enterobacteriaceae. The MHA was successfully applied to detect carbapenemase activity in 981 well-characterized Enterobacteriaceae strains producing KPC or VIM carbapenemases, and in 146 carbapenem fully susceptible strains. This assay, applied also to NDM and OXA-48-producing strains and to CRE with resistance mechanisms other than carbapenemase production, has proved to be able to distinguish between carbapenemase-producing and -nonproducing Enterobacteriaceae. As already stated and as observed in our hands, MHA by MALDI-TOF MS analysis is independent from the type of carbapenemases involved, it is faster and easier to perform/interpret than culture-based methods. On the other hand, it cannot detect other carbapenem resistance mechanisms, such as porin alterations and efflux mechanisms.


Subject(s)
Bacterial Proteins/biosynthesis , Enterobacteriaceae/drug effects , Thienamycins/metabolism , beta-Lactamases/biosynthesis , Enterobacteriaceae/enzymology , Meropenem , Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization , Thienamycins/pharmacology
9.
BMC Infect Dis ; 17(1): 78, 2017 01 17.
Article in English | MEDLINE | ID: mdl-28095794

ABSTRACT

BACKGROUND: Carbapenemase-producing Enterobacteriaceae (CPE) are difficult to identify among carbapenem non-susceptible Enterobacteriaceae (NSE). We designed phenotypic strategies giving priority to high sensitivity for screening putative CPE before further testing. METHODS: Presence of carbapenemase-encoding genes in ertapenem NSE (MIC > 0.5 mg/l) consecutively isolated in 80 French laboratories between November 2011 and April 2012 was determined by the Check-MDR-CT103 array method. Using the Mueller-Hinton (MH) disk diffusion method, clinical diameter breakpoints of carbapenems other than ertapenem, piperazicillin+tazobactam, ticarcillin+clavulanate and cefepime as well as diameter cut-offs for these antibiotics and temocillin were evaluated alone or combined to determine their performances (sensitivity, specificity, positive and negative likelihood ratios) for identifying putative CPE among these ertapenem-NSE isolates. To increase the screening specificity, these antibiotics were also tested on cloxacillin-containing MH when carbapenem NSE isolates belonged to species producing chromosomal cephalosporinase (AmpC) but Escherichia coli. RESULTS: Out of the 349 ertapenem NSE, 52 (14.9%) were CPE, including 39 producing OXA-48 group carbapenemase, eight KPC and five MBL. A screening strategy based on the following diameter cut offs, ticarcillin+clavulanate <15 mm, temocillin <15 mm, meropenem or imipenem <22 mm, and cefepime <26 mm, showed 100% sensitivity and 68.1% specificity with the better likelihood ratios combination. The specificity increased when a diameter cut-off <32 mm for imipenem (76.1%) or meropenem (78.8%) further tested on cloxacillin-containing MH was added to the previous strategy for AmpC-producing isolates. CONCLUSION: The proposed strategies that allowed for increasing the likelihood of CPE among ertapenem-NSE isolates should be considered as a surrogate for carbapenemase production before further CPE confirmatory testing.


Subject(s)
Algorithms , Bacterial Proteins/analysis , Carbapenems/metabolism , Drug Resistance, Bacterial , Enterobacteriaceae/metabolism , beta-Lactamases/analysis , Anti-Bacterial Agents/pharmacology , Bacterial Proteins/metabolism , Carbapenems/pharmacology , Cefepime , Cephalosporins/pharmacology , Clavulanic Acids/pharmacology , Enterobacteriaceae/drug effects , Enterobacteriaceae/genetics , Enterobacteriaceae/physiology , Ertapenem , Humans , Imipenem/metabolism , Imipenem/pharmacology , Meropenem , Microbial Sensitivity Tests , Penicillanic Acid/analogs & derivatives , Penicillanic Acid/pharmacology , Penicillins/pharmacology , Tazobactam , Thienamycins/metabolism , Thienamycins/pharmacology , Ticarcillin/pharmacology , beta-Lactamases/metabolism , beta-Lactams/metabolism , beta-Lactams/pharmacology
10.
Article in English | MEDLINE | ID: mdl-28069648

ABSTRACT

The number and type of outer membrane (OM) channels responsible for carbapenem uptake in Acinetobacter are still not well defined. Here, we addressed these questions by using Acinetobacter baylyi as a model species and a combination of methodologies aimed to characterize OM channels in their original membrane environment. Kinetic and competition analyses of imipenem (IPM) uptake by A. baylyi whole cells allowed us to identify different carbapenem-specific OM uptake sites. Comparative analyses of IPM uptake by A. baylyi wild-type (WT) cells and ΔcarO mutants lacking CarO indicated that this OM protein provided a carbapenem uptake site displaying saturable kinetics and common binding sites for basic amino acids compatible with a specific channel. The kinetic analysis uncovered another carbapenem-specific channel displaying a somewhat lower affinity for IPM than that of CarO and, in addition, common binding sites for basic amino acids as determined by competition studies. The use of A. baylyi gene deletion mutants lacking OM proteins proposed to function in carbapenem uptake in Acinetobacter baumannii indicated that CarO and OprD/OccAB1 mutants displayed low but consistent reductions in susceptibility to different carbapenems, including IPM, meropenem, and ertapenem. These two mutants also showed impaired growth on l-Arg but not on other carbon sources, further supporting a role of CarO and OprD/OccAB1 in basic amino acid and carbapenem uptake. A multiple-carbapenem-channel scenario may provide clues to our understanding of the contribution of OM channel loss or mutation to the carbapenem-resistant phenotype evolved by pathogenic members of the Acinetobacter genus.


Subject(s)
Acinetobacter/metabolism , Amino Acids, Basic/metabolism , Anti-Bacterial Agents/metabolism , Bacterial Outer Membrane Proteins/metabolism , Imipenem/metabolism , Porins/deficiency , Acinetobacter/genetics , Acinetobacter baumannii/genetics , Acinetobacter baumannii/metabolism , Bacterial Outer Membrane Proteins/genetics , Biological Transport , Cell Membrane/chemistry , Cell Membrane/metabolism , Ertapenem , Evolution, Molecular , Gene Deletion , Gene Expression , Kinetics , Meropenem , Porins/genetics , Thienamycins/metabolism , beta-Lactams/metabolism
11.
Int J Biol Macromol ; 96: 78-86, 2017 Mar.
Article in English | MEDLINE | ID: mdl-27986632

ABSTRACT

Among Enterobacteriaceae, CTX-M type extended spectrum beta lactamase confers potent hydrolytic activity against cephalosporin group of antibiotics. Strains producing CTX-M type beta lactamase enzymes, show high level of resistance against cefotaxime. Therefore carbapenem antibiotics are used against beta lactamase producing strains. Hence, this study was designed to understand an insight of molecular basis of CTX-M-15 interaction with meropenem, and its effect on CTX-M-15 efficiency. Clinical strain of Enterobacter cloacae (EC-15) was used to clone blaCTX-M-15 gene in E.coli BL21cells. The protein was then expressed and purified. Results showed that CTX-M-15 producing strains are susceptible to meropenem. It quenches the fluorescence of CTX-M-15 spontaneously with binding constant of the order of 103M-1. Meropenem binds on the active site of CTX-M-15, hydrogen bonded with four common amino acid residues of cefotaxime binding site, as revealed by molecular docking studies. Conformational change in the structure of CTX-M-15 was observed upon meropenem binding by CD spectroscopy. The catalytic efficiency of CTX-M-15 was decreased up to 4 times upon meropenem binding. Docking study shows that few amino acids of active site of enzyme are also involved in meropenem binding, hence substrate is difficult to bind on active site properly and does not get hydrolysed. Moreover, meropenem binding induces structural changes in CTX-M-15, making the enzyme less efficient.


Subject(s)
Anti-Bacterial Agents/chemistry , Anti-Bacterial Agents/metabolism , Thienamycins/chemistry , Thienamycins/metabolism , beta-Lactamases/chemistry , beta-Lactamases/metabolism , Enterobacter cloacae/enzymology , Hydrogen Bonding , Kinetics , Meropenem , Molecular Docking Simulation , Protein Binding , Protein Conformation
12.
Microb Drug Resist ; 23(4): 457-461, 2017 Jun.
Article in English | MEDLINE | ID: mdl-27575912

ABSTRACT

Timely detection of carbapenemases by both phenotypic and genotypic methods is essential for developing strategies to control the spread of infections by carbapenem-resistant isolates and related morbidity and mortality. The aim of this study was to compare the performance of a commercial kit, the RAPIDEC® CARBA NP, and an in-house technique, the carbapenem inactivation method (CIM), against a panel of 136 carbapenemase- and noncarbapenemase-producing Enterobacteriaceae, Acinetobacter baumannii, and Pseudomonas aeruginosa isolates. RAPIDEC CARBA NP displayed 99% sensitivity and 100% specificity, whereas the sensitivity and specificity were 78% and 100% for the CIM test, respectively. A slight modification of the CIM test, a prolonged incubation time of 4 hours instead of two, increased the sensitivity of the test to 90% by diminishing false negativity particularly for A. baumannii. In conclusion, both tests possess a high performance and are practical for the detection of carbapenemases. Although RAPIDEC CARBA NP is a more rapid and reliable method, the CIM test may represent a useful tool for microbiology laboratories due to its simplicity and availability at any laboratory with low cost.


Subject(s)
Anti-Bacterial Agents/metabolism , Bacterial Proteins/analysis , Enterobacteriaceae/enzymology , Reagent Kits, Diagnostic/standards , Thienamycins/metabolism , beta-Lactamases/analysis , Acinetobacter baumannii/drug effects , Acinetobacter baumannii/enzymology , Acinetobacter baumannii/genetics , Anti-Bacterial Agents/pharmacology , Bacterial Proteins/genetics , Bacterial Proteins/metabolism , Enterobacteriaceae/drug effects , Enterobacteriaceae/genetics , Gene Expression , Inactivation, Metabolic , Meropenem , Microbial Sensitivity Tests , Pseudomonas aeruginosa/drug effects , Pseudomonas aeruginosa/enzymology , Pseudomonas aeruginosa/genetics , Sensitivity and Specificity , Thienamycins/pharmacology , beta-Lactamases/genetics , beta-Lactamases/metabolism
13.
J Antimicrob Chemother ; 72(2): 437-440, 2017 02.
Article in English | MEDLINE | ID: mdl-27798215

ABSTRACT

OBJECTIVES: To investigate the performance of the meropenem and imipenem double-ended Etest ±â€ŠEDTA and the tablet-based (meropenem and meropenem + dipicolinic acid) KPC/MBL Confirm Kit to detect cfiA metallo-ß-lactamase (MBL) in Bacteroides fragilis. METHODS: Well-characterized B. fragilis isolates, most from previously published studies, harbouring the cfiA gene and covering a wide range of meropenem MICs were included (n = 21). RESULTS: The imipenem double-ended Etest showed an indeterminate result in 95% of the included isolates with the cfiA gene (20 of 21), whereas the meropenem double-ended Etest gave an MIC ratio ≥8 (positive test) with all the isolates. All isolates that were meropenem intermediate or resistant had a zone diameter difference ≥6 mm with the KPC/MBL Confirm Kit. CONCLUSIONS: The meropenem double-ended Etest and not imipenem should be preferred for phenotypic detection of MBLs in B. fragilis. The KPC/MBL Confirm Kit could be an alternative with isolates that are meropenem intermediate or resistant (MIC >2 mg/L).


Subject(s)
Anti-Bacterial Agents/metabolism , Bacterial Proteins/analysis , Bacteroides fragilis/enzymology , Disk Diffusion Antimicrobial Tests/methods , Edetic Acid/metabolism , Reagent Kits, Diagnostic , Thienamycins/metabolism , beta-Lactamases/analysis , Meropenem
14.
J Hosp Infect ; 94(1): 65-7, 2016 Sep.
Article in English | MEDLINE | ID: mdl-27160868

ABSTRACT

Eighty-three carbapenem-resistant Serratia marcescens isolates were recovered from Zhejiang Provincial People's Hospital, China. The minimum inhibitory concentrations of imipenem, meropenem, and ertapenem for all isolates were 2 to >128 µg/mL. Polymerase chain reaction indicated that 63 S. marcescens isolates produced Klebsiella pneumoniae carbapenemase (KPC)-2. Clone A (15 isolates) and clone B (41 isolates) were the two dominant clones and clone A strains were gradually replaced by clone B strains between 2011 and 2014. The results indicate that blaKPC-2-positive S. marcescens emerged in our hospital as the major mechanism of carbapenem resistance.


Subject(s)
Anti-Bacterial Agents/metabolism , Carbapenems/metabolism , Serratia Infections/epidemiology , Serratia Infections/microbiology , Serratia marcescens/enzymology , beta-Lactamases/genetics , Adult , Aged , Aged, 80 and over , Anti-Bacterial Agents/pharmacology , China/epidemiology , DNA, Bacterial/genetics , Ertapenem , Female , Genotype , Hospitals , Humans , Hydrolysis , Imipenem/metabolism , Imipenem/pharmacology , Male , Meropenem , Microbial Sensitivity Tests , Middle Aged , Molecular Typing , Polymerase Chain Reaction , Serratia marcescens/classification , Serratia marcescens/genetics , Serratia marcescens/isolation & purification , Thienamycins/metabolism , Thienamycins/pharmacology , Young Adult , beta-Lactams/metabolism , beta-Lactams/pharmacology
15.
J Biomol Struct Dyn ; 34(9): 1849-64, 2016 Sep.
Article in English | MEDLINE | ID: mdl-26372227

ABSTRACT

Carbapenems are used to control the outbreak of ß-lactamases expressing bacteria. The effectiveness of drugs is influenced by its interaction with human serum albumin (HSA). Strong binding of carbapenems to HSA may lead to decreased bioavailability of the drug. The non-optimal drug dosage will provide a positive selection pressure on bacteria to develop resistance. Here, we investigated the interaction between meropenem and HSA at physiological pH 7.5 (N-isoform HSA) and non-physiological pH 9.2 (B-isoform HSA). Results showed that meropenem quenches the fluorescence of both 'N' and 'B' isoforms of HSA (ΔG < 0 and binding constant ~10(4) M(-1)). Electrostatic interactions and van der Waal interactions along with H-bonds stabilized the complex of meropenem with 'N' and 'B' isoforms of HSA, respectively. Molecular docking results revealed that meropenem binds to HSA near Sudlow's site II (subdomain IIIA) close to Trp-214 with a contribution of a few residues of subdomain IIA. CD spectroscopy showed a change in the conformation of both the isoforms of HSA upon meropenem binding. The catalytic efficiency of HSA (only N-isoform) on p-nitrophenyl acetate was increased primarily due to a decrease in Km and an increase in kcat values. This study provides an insight into the molecular basis of interaction between meropenem and HSA.


Subject(s)
Serum Albumin/chemistry , Thienamycins/chemistry , Binding Sites , Circular Dichroism , Enzyme Activation , Fluorescence Resonance Energy Transfer , Humans , Kinetics , Meropenem , Models, Molecular , Molecular Docking Simulation , Protein Binding , Protein Conformation , Protein Isoforms , Serum Albumin/metabolism , Spectrometry, Fluorescence , Spectrum Analysis/methods , Thermodynamics , Thienamycins/metabolism
16.
J Microbiol Immunol Infect ; 49(6): 910-917, 2016 Dec.
Article in English | MEDLINE | ID: mdl-26420036

ABSTRACT

BACKGROUND: The emergence and spread of carbapenem-resistant Acinetobacter baumannii poses a challenge for optimizing antibiotic therapies and preventing outbreaks. Traditional phenotypic assays such as the modified Hodge test (MHT) or polymerase chain reaction (PCR)-based detection of the carbapenemase genes are time-consuming and complicated. Therefore, new approaches for the efficient detection of carbapenemase-producing A. baumannii are urgently required. METHODS: In this study, we used the superficially porous liquid chromatography-tandem mass spectrometry (LC-MS/MS) assay to measure carbapenem hydrolysis in a solution spiked with test strains of A. baumannii. The rate of carbapenem hydrolysis during incubation was expressed as the ratio of the carbapenem peak area of the test A. baumannii strains to the noncarbapenemase-producing A. baumannii ATCC 17978. This method can accurately measure the carbapenem hydrolysis rate and, therefore, can effectively identify carbapenemase-producing strains within 75 minutes. RESULTS: A total of 112 A. baumannii strains were used in this study, including 103 clinical isolates with 68 carbapenem-resistant strains and 35 carbapenem-susceptible strains, seven ATCC strains and two selected mutants. The results of the superficially porous LC-MS/MS assay showed higher detection sensitivity compared to the results of the MHT. CONCLUSION: Our results demonstrate the ability of the former method to routinely detect carbapenemase-producing A. baumannii.


Subject(s)
Acinetobacter baumannii/drug effects , Anti-Bacterial Agents/metabolism , Bacterial Proteins/metabolism , Chromatography, Liquid/methods , Imipenem/metabolism , Tandem Mass Spectrometry/methods , Thienamycins/metabolism , beta-Lactamases/metabolism , Acinetobacter baumannii/isolation & purification , Acinetobacter baumannii/metabolism , Drug Resistance, Multiple, Bacterial , Humans , Meropenem
17.
Eur J Pharm Biopharm ; 99: 24-34, 2016 Feb.
Article in English | MEDLINE | ID: mdl-26592156

ABSTRACT

Following the preparation of an inclusion complex of ß-cyclodextrin and meropenem, methods based on FT-IR, Raman and DSC were used for its characterization. An analysis of changes in the stability of meropenem after complexation showed that the complex may serve as a valuable delivery system significantly contributing to enhanced meropenem stability in aqueous solutions and in the solid phase. Due to a sustained transfer of meropenem from the cavity of the cyclodextrin it was possible to maintain a constant desired meropenem concentration over a period of 20 h, as confirmed by a release study. An evaluation of microbial activity not only demonstrated that the bactericidal action of meropenem was not stopped as a result of complexation but even pointed to greater growth inhibition in certain clinically important strains. The fact that investigations of meropenem stability and microbial activity proposed the carbonyl groups as those domains of a meropenem molecule that are instrumental in the formation of a complex with ß-cyclodextrin supports the findings of theoretical studies based on molecular modeling.


Subject(s)
Drug Delivery Systems/methods , Thienamycins/administration & dosage , Thienamycins/chemistry , beta-Cyclodextrins/administration & dosage , beta-Cyclodextrins/chemistry , Binding Sites/physiology , Macromolecular Substances/administration & dosage , Macromolecular Substances/chemistry , Macromolecular Substances/metabolism , Meropenem , Microbial Sensitivity Tests/methods , Thienamycins/metabolism , beta-Cyclodextrins/metabolism
18.
PLoS One ; 10(11): e0142352, 2015.
Article in English | MEDLINE | ID: mdl-26562532

ABSTRACT

OBJECTIVE: The gut microbiota has been designated as an active regulator of glucose metabolism and metabolic phenotype in a number of animal and human observational studies. We evaluated the effect of removing as many bacteria as possible by antibiotics on postprandial physiology in healthy humans. METHODS: Meal tests with measurements of postprandial glucose tolerance and postprandial release of insulin and gut hormones were performed before, immediately after and 6 weeks after a 4-day, broad-spectrum, per oral antibiotic cocktail (vancomycin 500 mg, gentamycin 40 mg and meropenem 500 mg once-daily) in a group of 12 lean and glucose tolerant males. Faecal samples were collected for culture-based assessment of changes in gut microbiota composition. RESULTS: Acute and dramatic reductions in the abundance of a representative set of gut bacteria was seen immediately following the antibiotic course, but no changes in postprandial glucose tolerance, insulin secretion or plasma lipid concentrations were found. Apart from an acute and reversible increase in peptide YY secretion, no changes were observed in postprandial gut hormone release. CONCLUSION: As evaluated by selective cultivation of gut bacteria, a broad-spectrum 4-day antibiotics course with vancomycin, gentamycin and meropenem induced shifts in gut microbiota composition that had no clinically relevant short or long-term effects on metabolic variables in healthy glucose-tolerant males. TRIAL REGISTRATION: clinicaltrials.gov NCT01633762.


Subject(s)
Anti-Bacterial Agents/pharmacology , Gastrointestinal Hormones/metabolism , Gastrointestinal Microbiome/drug effects , Glucose/metabolism , Adolescent , Adult , Anti-Bacterial Agents/adverse effects , Anti-Bacterial Agents/metabolism , Bacterial Load , Blood Glucose/metabolism , Diarrhea/chemically induced , Fasting/blood , Feces/chemistry , Feces/microbiology , Gastrointestinal Hormones/blood , Gentamicins/adverse effects , Gentamicins/metabolism , Gentamicins/pharmacology , Humans , Insulin/blood , Male , Meropenem , Postprandial Period , Thienamycins/adverse effects , Thienamycins/metabolism , Thienamycins/pharmacology , Time Factors , Treatment Outcome , Vancomycin/adverse effects , Vancomycin/metabolism , Vancomycin/pharmacology , Young Adult
20.
Antimicrob Agents Chemother ; 59(7): 4326-30, 2015 Jul.
Article in English | MEDLINE | ID: mdl-25918145

ABSTRACT

Metallo-ß-lactamases inactivate most ß-lactam antibacterials, and much attention has been paid to their catalytic mechanism. One issue of controversy has been whether ß-lactam hydrolysis generally proceeds through an anionic intermediate bound to the active-site Zn(II) ions or not. The formation of an intermediate has not been shown conclusively in imipenemase (IMP) enzymes to date. Here, we provide evidence that intermediates are formed during the hydrolysis of meropenem and chromacef catalyzed by the variant IMP-25 and, to a lesser degree, IMP-1.


Subject(s)
Anti-Bacterial Agents/metabolism , Cephalosporins/metabolism , Thienamycins/metabolism , beta-Lactamases/genetics , beta-Lactamases/metabolism , Catalysis , Catalytic Domain , Hydrolysis , Kinetics , Meropenem , Zinc/metabolism
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