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1.
Plant Cell Rep ; 40(9): 1665-1678, 2021 Sep.
Article in English | MEDLINE | ID: mdl-34052885

ABSTRACT

KEY MESSAGE: Improved compact shoot architecture of Osteospermum fruticosum Ri lines obtained through Rhizobium rhizogenes transformation reduces the need for chemical growth retardants. Compactness is for many ornamental crops an important commercial trait that is usually obtained through the application of growth retardants. Here, we have adopted a genetic strategy to introduce compactness in the perennial shrub Cape daisy (Osteospermum fruticosum Norl.). To this end, O. fruticosum was transformed using six different wild type Rhizobium rhizogenes strains. The most effective R. rhizogenes strains Arqua1 and ATCC15834 were used to create hairy root cultures from six Cape daisy genotypes. These root cultures were regenerated to produce transgenic Ri lines, which were analyzed for compactness. Ri lines displayed the characteristic Ri phenotype, i.e., reduced plant height, increased branching, shortened internodes, shortened peduncles, and smaller flowers. Evaluation of the Ri lines under commercial production conditions showed that similar compactness was obtained as the original Cape daisy genotypes treated with growth retardant. The results suggest that the use of chemical growth retardants may be omitted or reduced in commercial production systems of Cape daisy through implementation of Ri lines in future breeding programs.


Subject(s)
Agrobacterium/physiology , Asteraceae/growth & development , Plant Shoots/physiology , Asteraceae/drug effects , Asteraceae/genetics , Asteraceae/microbiology , Chlormequat/pharmacology , Coculture Techniques , Phenotype , Plant Breeding/methods , Plant Growth Regulators/pharmacology , Plant Roots/cytology , Plant Roots/growth & development , Plant Shoots/drug effects , Tissue Culture Techniques/methods , Transformation, Genetic/physiology
2.
Methods Mol Biol ; 2290: 271-284, 2021.
Article in English | MEDLINE | ID: mdl-34009596

ABSTRACT

Various steps of micropropagation include selection of suitable explant, establishment of adventitious shoot induction cultures, proliferation, rooting, and acclimatization of the resulting plantlets. A systematic protocol is provided for the micropropagation and Agrobacterium tumefaciens-mediated genetic transformation of a fast growing, multipurpose tree, Paulownia elongata. Our studies show that optimum shoot induction is on half leaf with petiole explant on MS medium supplemented with 25 µM thidiazuron and 10 µM indole-3 acetic acid. Micropropagation protocols provided here are applicable to explants collected from the primed in vitro raised seedlings on MS medium containing 2.5 µM 6-benzylaminopurine (BAP) or actively growing shoots collected from greenhouse or field growing plants. We also discuss a possible role of "Python" script guided protocol optimization for higher and consistent multiplication of shoots that can be very helpful for scaled up production in commercial settings. To facilitate future plant improvement and gene editing possibilities, an A. tumefaciens based genetic transformation protocol and molecular identification of transgenic plants using Polymerase Chain Reaction (PCR) and Reverse Transcriptase-PCR (RT-PCR) techniques have also been optimized.


Subject(s)
Lamiales/genetics , Plant Breeding/methods , Agrobacterium tumefaciens/drug effects , Culture Media , Indoleacetic Acids/pharmacology , Lamiales/growth & development , Phenylurea Compounds/pharmacology , Plant Growth Regulators/pharmacology , Plant Leaves/drug effects , Plant Roots/drug effects , Plant Shoots/drug effects , Seedlings/drug effects , Thiadiazoles/pharmacology , Tissue Culture Techniques/methods , Transformation, Genetic/genetics , Transformation, Genetic/physiology , Trees/genetics
3.
ACS Synth Biol ; 9(12): 3228-3235, 2020 12 18.
Article in English | MEDLINE | ID: mdl-33231069

ABSTRACT

Affordable and automated cloning platforms are essential to many synthetic biology studies. However, the traditional E. coli-based cloning is a major bottleneck as it requires heat shock or electroporation implemented in the robotic workflows. To overcome this problem, we explored bacterial natural transformation for automatic DNA cloning and engineering. Recombinant plasmids are efficiently generated from Gibson or overlap extension PCR (OE-PCR) products by simply adding the DNA into Acinetobacter baylyi ADP1 cultures. No DNA purification, competence induction, or special equipment is required. Up to 10,000 colonies were obtained per microgram of DNA, while the number of false positive colonies was low. We cloned and engineered 21 biosynthetic gene clusters (BGCs) of various types, with length from 1.5 to 19 kb and GC content from 35% to 72%. One of them, a nucleoside BGC, showed antibacterial activity. Furthermore, the method was easily transferred to a low-cost benchtop robot with consistent cloning efficiency. Thus, this automatic natural transformation (ANT) cloning provides an easy, robust, and affordable platform for high throughput DNA engineering.


Subject(s)
Acinetobacter/metabolism , Cloning, Molecular , Transformation, Genetic/physiology , Acinetobacter/genetics , Automation , Biological Products/metabolism , DNA/chemistry , DNA/metabolism , Escherichia coli/genetics , Multigene Family/genetics , Polymerase Chain Reaction
4.
Bioengineered ; 11(1): 1071-1079, 2020 12.
Article in English | MEDLINE | ID: mdl-32993460

ABSTRACT

NANNOCHLOROPSIS: sp. is a green alga that is widely used in the aquaculture industry as a feed in Malaysia, but genetic engineering studies of this alga are still underexplored even though there is a growing interest in microalgae genetic engineering for various industrial purposes. This study aims to investigate the efficiency of three transformation methods normally done on microalgae, namely polyethylene glycol (PEG), electroporation, and glass beads on Malaysian indigenous Nannochloropsis sp. using two commercially available plasmids, pUC19 and pGEM-T easy vector as well as an amplicon of ampicillin resistance (AMPR) gene. In this study, out of three transformation methods tested, positive transformants of Nannochloropsis sp. were successfully obtained via electroporation method. Further verification via polymerase chain reaction (PCR) and sequencing confirmed that the electroporation method was found to be the sole successful method in producing transgenic lines of our locally isolated Nannochloropsis sp. Results from this study proved the efficiency of electroporation for delivery of transgene to this green alga which has been reported to be tedious. The described method also provides the gateway for developing Nannochloropsis sp. as a delivery system to aquatic organism due to its importance in the industry.


Subject(s)
Microalgae/metabolism , Transformation, Genetic/physiology , Aquaculture , Aquatic Organisms/genetics , Aquatic Organisms/metabolism , Electroporation , Microalgae/genetics , Polymerase Chain Reaction , Transformation, Genetic/genetics
5.
IET Nanobiotechnol ; 13(6): 609-616, 2019 Aug.
Article in English | MEDLINE | ID: mdl-31432794

ABSTRACT

Here, a rapid and easy transformation by electroporation technique for gene transfer in plants using cell penetrating amino nanocomplex (nanoplex) has been demonstrated in Nicotiana. Nanoplex was prepared using cell penetrating amino acids (CPAs) such as poly-L-lysine (PLL) and Argenine (Arg), in combination with the gold nanoparticles (AuNPs). PLLs-modified nanoplex with zeta potential of 34.2 ± 1.22 mV charge showed 63.3% efficiency for gene transformation in plant cells as compared to 60% when modified with Arg and the zeta potential was found to be 30.0 ± 0.83 mV; whereas, the transformation efficiency without nanoplex was found to be 6.6%. The findings indicate that the zeta potential of positively charged nanocomplex (AuNPs/CPAs/DNA/CPAs) increases the transformation efficiency because of their ability to protect the DNA from electroporation wave and endogenous enzyme damage. Transformation was confirmed by GUS assay and amplification of npt gene. This technique may open up new possibilities of gene transfer in plants, which will enable to produce large number of transgenic plants.


Subject(s)
Electroporation/methods , Gene Transfer Techniques , Gold/chemistry , Metal Nanoparticles/chemistry , Plants/genetics , Transformation, Genetic/physiology , Agrobacterium tumefaciens , Cells, Cultured , DNA, Plant/genetics , Plant Cells/drug effects , Plant Cells/metabolism , Plants, Genetically Modified , Nicotiana/cytology , Nicotiana/genetics
6.
J Biosci Bioeng ; 128(3): 255-263, 2019 Sep.
Article in English | MEDLINE | ID: mdl-31076339

ABSTRACT

In recent years, it has been shown that recombinant RNA molecules have a great potential in mRNA therapy and as novel agricultural pesticides. We developed a fundamental system for efficient production of target RNA molecules in Corynebacterium glutamicum, composed of a strong promoter named F1 and a terminator derived from corynephage BFK20 in a high-copy number plasmid vector. As a target model RNA for overexpression, we designed and used an RNA molecule [designated U1A*-RNA, ∼160 nucleotides (nt) long] containing a stem/loop II (SL-II, hairpin-II) structure from U1 small nuclear RNA (snRNA), which binds to U1A protein, forming a U1 sn-ribonucleoprotein, which is essential in the pre-mRNA splicing process. C. glutamicum strains harboring the U1A*-RNA expression plasmid were cultured and the total RNA was analyzed. We observed prominent expression of RNA corresponding to the U1A*-RNA transcript along with lower expression of a 3'-region-truncated form of the transcript (∼110 nt) in an rnc (encoding RNase III)-deficient strain. We also found that the produced U1A*-RNA bound to the U1A RNA-binding domain protein, which was separately prepared with C. glutamicum. In a batch cultivation using a fermentor, the total accumulated amount of the target RNA reached about 300 mg/L by 24 h. Thus, our results indicated that our system can serve as an efficient platform for large-scale preparation of an RNA of interest.


Subject(s)
Bacteriophages/genetics , Corynebacterium glutamicum/genetics , Gene Transfer Techniques , Genetic Vectors/genetics , Promoter Regions, Genetic , RNA/genetics , Cloning, Molecular , Corynebacterium glutamicum/metabolism , Corynebacterium glutamicum/virology , Gene Expression Regulation, Bacterial , Genetic Vectors/chemical synthesis , Plasmids , Ribonucleoprotein, U1 Small Nuclear/genetics , Ribonucleoprotein, U1 Small Nuclear/metabolism , Transformation, Genetic/physiology
7.
Plant Signal Behav ; 14(3): e1581562, 2019.
Article in English | MEDLINE | ID: mdl-30774017

ABSTRACT

Agrobacterium tumefaciens is a plant pathogen which provokes galls on roots and stems (crown-gall disease) and colonizes them. Two approaches combining omics were used to decipher the lifestyle of A. tumefaciens in plant tumors: an integrative approach when omics were used on A. tumefaciens cells collected from plant tumors, a deconvolution approach when omics were used on A. tumefaciens cells exploiting a single tumor metabolite in pure culture assay. This addendum highlights some recent results on the biotroph lifestyle of A. tumefaciens in plant tumors.


Subject(s)
Agrobacterium tumefaciens/physiology , Plant Tumors/microbiology , Agrobacterium tumefaciens/genetics , Gene Expression Regulation, Plant/physiology , Plant Roots/genetics , Plant Roots/metabolism , Plants, Genetically Modified/genetics , Plants, Genetically Modified/metabolism , Transformation, Genetic/genetics , Transformation, Genetic/physiology
8.
Mol Biol Rep ; 46(2): 1845-1853, 2019 Apr.
Article in English | MEDLINE | ID: mdl-30707418

ABSTRACT

Wheat is the most widely grown staple food crop in the world and accounts for dietary needs of more than 35% of the human population. Current status of transgenic wheat development is slow all over the world due to the lack of a suitable transformation system. In the present study, an efficient and reproducible Agrobacterium-mediated transformation system in bread wheat (Triticum aestivum L.) is established. The mature and immature embryos of six recently released high yielding spring bread wheat genotypes were used to standardize various parameters using Agrobacterium tumefaciens strain EHA105 harbouring binary vector pCAMBIA3301 having gus and bar as marker genes. The optimum duration for embryo pre-culture, inoculation time and co-cultivation were 2 days, 30 min and 48 h, respectively. The bacterial inoculum concentration of OD of 1 at 600 nm showed 67.25% transient GUS expression in the histochemical GUS assay. The filter paper based co-cultivation limits the Agrobacterium overgrowth and had 82.3% explants survival rate whereas medium based strategy had 22.7% explants survival only. The medium having picloram 4 mg/l along with antibiotics (cefotaxime 500 mg/l and timentin 300 mg/l) was found best suitable for initial week callus induction. The standardized procedure gave overall 14.9% transformation efficiency in immature embryos and 9.8% in mature embryos and confirmed by gene-specific and promoter-specific PCR and southern analysis. These results indicate that the developed Agrobacterium-mediated transformation system is suitable for diverse wheat genotypes. The major obstacle for the implication of the CRISPR-based genome editing techniques is the non-availability of a suitable transformation system. Thus, the present system can be exploited to deliver the T-DNA into the wheat genome for CRISPR-based target modifications and transgene insertions.


Subject(s)
Agrobacterium tumefaciens/genetics , Transformation, Genetic/genetics , Triticum/genetics , Agriculture/methods , Agrobacterium/genetics , Agrobacterium/metabolism , Agrobacterium tumefaciens/physiology , DNA, Bacterial/genetics , DNA, Bacterial/metabolism , Genetic Engineering/methods , Genetic Markers , Plants, Genetically Modified/genetics , Poaceae/genetics , Promoter Regions, Genetic/genetics , Seeds/genetics , Transformation, Genetic/physiology , Transgenes , Triticum/growth & development
9.
Prep Biochem Biotechnol ; 49(1): 82-87, 2019.
Article in English | MEDLINE | ID: mdl-30621495

ABSTRACT

We investigated the effect of Agrobacterium rhizogenes-mediated transformation on antioxidant activity of Artemisia vulgaris "hairy" roots. It appeared that transformation may increase flavonoid content as well as DPPH-scavenging activity and ability to reduce Fe3+ as compared to the non-transformed plants. Some "hairy" roots accumulated flavonoids up to 73.1 ± 10.6 mg RE/g DW (while the amount of flavonoids in the leaves of non-transformed plants was up to 49.4 ± 5.0 mg RE/g DW). DPPH-scavenging activity of some "hairy" root lines was 3-3.8 times higher than such one of the roots of the control plants. The Fe3+-reducing power of most transgenic root extracts exceeded such power of the extracts of the roots of the control plants. The decrease in SOD activity was found in the most "hairy" root lines compared to the control roots. The increase of flavonoid content correlated with the increase of ability of extracts to scavenge DPPH*- radical and Fe3+ - reducing power. No correlation between SOD activity of extracts and concentration of flavonoids was found (p ≥ 0.2).Thus, transformation has led to the alteration in flavonoid accumulation and antioxidant activity in A. vulgaris "hairy" roots. Transgenic roots with high-antioxidant properties can be selected after A. rhizogenes-mediated transformation.


Subject(s)
Agrobacterium/physiology , Antioxidants/chemistry , Artemisia/chemistry , Flavonoids/analysis , Plant Extracts/pharmacology , Plant Roots/chemistry , Biphenyl Compounds/metabolism , Flavonoids/metabolism , Oxidation-Reduction , Picrates/metabolism , Plant Extracts/chemistry , Plant Roots/microbiology , Polymerase Chain Reaction , Transformation, Genetic/physiology
10.
J Vis Exp ; (115)2016 09 27.
Article in English | MEDLINE | ID: mdl-27768035

ABSTRACT

Over the last decade there has been a resurgence in the use of plant protoplasts that range from model species to crop species, for analysis of signal transduction pathways, transcriptional regulatory networks, gene expression, genome-editing, and gene-silencing. Furthermore, significant progress has been made in the regeneration of plants from protoplasts, which has generated even more interest in the use of these systems for plant genomics. In this work, a protocol has been developed for automation of protoplast isolation and transformation from a 'Bright Yellow' 2 (BY-2) tobacco suspension culture using a robotic platform. The transformation procedures were validated using an orange fluorescent protein (OFP) reporter gene (pporRFP) under the control of the Cauliflower mosaic virus 35S promoter (35S). OFP expression in protoplasts was confirmed by epifluorescence microscopy. Analyses also included protoplast production efficiency methods using propidium iodide. Finally, low-cost food-grade enzymes were used for the protoplast isolation procedure, circumventing the need for lab-grade enzymes that are cost-prohibitive in high-throughput automated protoplast isolation and analysis. Based on the protocol developed in this work, the complete procedure from protoplast isolation to transformation can be conducted in under 4 hr, without any input from the operator. While the protocol developed in this work was validated with the BY-2 cell culture, the procedures and methods should be translatable to any plant suspension culture/protoplast system, which should enable acceleration of crop genomics research.


Subject(s)
Nicotiana/cytology , Protoplasts/cytology , Transformation, Genetic/physiology , Gene Expression , Genes, Reporter , High-Throughput Screening Assays/methods , Luminescent Proteins/biosynthesis , Luminescent Proteins/genetics , Microscopy, Fluorescence , Promoter Regions, Genetic , Protoplasts/metabolism , Robotics/methods , Nicotiana/genetics , Nicotiana/metabolism
11.
Plant Cell Rep ; 35(6): 1259-71, 2016 Jun.
Article in English | MEDLINE | ID: mdl-26960402

ABSTRACT

KEY MESSAGE: Antagonists and sonication treatment relieved the structural barriers of Agrobacterium entering into cells; hindered signal perception and transmission; alleviated defense responses and increased cell susceptibility to Agrobacterium infection. Soybean gene expression analysis was performed to elucidate the general response of soybean plant to Agrobacterium at an early stage of infection. Agrobacterium infection stimulated the PAMPs-triggered immunity (BRI1, BAK1, BZR1, FLS2 and EFR) and effector-triggered immunity (RPM1, RPS2, RPS5, RIN4, and PBS1); up-regulated the transcript factors (WRKY25, WRKY29, MEKK1P, MKK4/5P and MYC2) in MAPK pathway; strengthened the biosynthesis of flavonoid and isoflavonoid in the second metabolism; finally led to a fierce defense response of soybean to Agrobacterium infection and thereby lower transformation efficiency. To overcome it, antagonist α-aminooxyacetic acid (AOA) and sonication treatment along with Agrobacterium infection were applied. This novel method dramatically decreased the expression of genes coding for F3'H, HCT, ß-glucosidase and IF7GT, etc., which are important for isoflavone biosynthesis or the interconversion of aglycones and glycon; genes coding for peroxidase, FLS2, PBS1 and transcription factor MYC2, etc., which are important components in plant-pathogen interaction; and genes coding for GPAT and α-L-fucosidase, which are important in polyesters formation in cell membrane and the degradation of fucose-containing glycoproteins and glycolipids on the external surface of cell membrane, respectively. This analysis implied that AOA and sonication treatment not only relieved the structural membrane barriers of Agrobacterium entering into cells, but also hindered the perception of 'invasion' signal on cell membrane and intercellular signal transmission, thus effectively alleviated the defense responses and increased the cell susceptibility to Agrobacterium infection. All these factors benefit the transformation process; other measures should also be further explored to improve soybean transformation.


Subject(s)
Agrobacterium tumefaciens/pathogenicity , Glycine max/microbiology , Plant Tumors/microbiology , Aminooxyacetic Acid/pharmacology , Gene Expression Profiling , Gene Expression Regulation, Plant/drug effects , Gene Expression Regulation, Plant/physiology , Sequence Analysis, DNA , Sonication , Glycine max/genetics , Glycine max/physiology , Transformation, Genetic/drug effects , Transformation, Genetic/physiology
12.
Biochem J ; 473(1): 99-107, 2016 Jan 01.
Article in English | MEDLINE | ID: mdl-26508734

ABSTRACT

Cancer cells are capable of sphere formation (transformation) through reactive oxygen species (ROS) and glycolysis shift. Transformation is linked to tumorigenesis and therapy resistance, hence targeting regulators of ROS and glycolysis is important for cancer therapeutic candidates. Here, we demonstrate that Smac mimetic AZ58 in combination with tumour necrosis factor-α (TNF-α) was able to inhibit the production of ROS, inhibit glycolysis through Pim-1 kinase-mediated Ser-112 phosphorylation of BAD, and increase depolarization of mitochondria. We also identified mitochondrial isoforms of Pim-1 kinase that were targeted for degradation by AZ58 in combination with TNF-α or AZ58 in combination with Fas ligand (FasL) plus cycloheximide (CHX) through caspase-3 to block transformation. Our study demonstrates that Smac mimetic in combination with TNF-α is an ideal candidate to target Pim-1 expression, inhibit ROS production and to block transformation from blebbishields.


Subject(s)
Biomimetic Materials/metabolism , Intracellular Signaling Peptides and Proteins/metabolism , Mitochondrial Proteins/metabolism , Proto-Oncogene Proteins c-pim-1/metabolism , Reactive Oxygen Species/metabolism , Transformation, Genetic/physiology , Tumor Necrosis Factor-alpha/metabolism , Apoptosis Regulatory Proteins , Biomimetic Materials/administration & dosage , Cell Line, Tumor , Humans , Intracellular Signaling Peptides and Proteins/administration & dosage , Mitochondrial Proteins/administration & dosage , Protein Isoforms/metabolism , Transformation, Genetic/drug effects , Tumor Necrosis Factor-alpha/administration & dosage
13.
J Bacteriol ; 197(15): 2545-57, 2015 Aug 01.
Article in English | MEDLINE | ID: mdl-26013484

ABSTRACT

UNLABELLED: In bacteria, copper homeostasis is closely monitored to ensure proper cellular functions while avoiding cell damage. Most Gram-positive bacteria utilize the copYABZ operon for copper homeostasis, where copA and copB encode copper-transporting P-type ATPases, whereas copY and copZ regulate the expression of the cop operon. Streptococcus mutans is a biofilm-forming oral pathogen that harbors a putative copper-transporting copYAZ operon. Here, we characterized the role of copYAZ operon in the physiology of S. mutans and delineated the mechanisms of copper-induced toxicity in this bacterium. We observed that copper induced toxicity in S. mutans cells by generating oxidative stress and disrupting their membrane potential. Deletion of the copYAZ operon in S. mutans strain UA159 resulted in reduced cell viability under copper, acid, and oxidative stress relative to the viability of the wild type under these conditions. Furthermore, the ability of S. mutans to form biofilms and develop genetic competence was impaired under copper stress. Briefly, copper stress significantly reduced cell adherence and total biofilm biomass, concomitantly repressing the transcription of the gtfB, gtfC, gtfD, gbpB, and gbpC genes, whose products have roles in maintaining the structural and/or functional integrity of the S. mutans biofilm. Furthermore, supplementation with copper or loss of copYAZ resulted in significant reductions in transformability and in the transcription of competence-associated genes. Copper transport assays revealed that the ΔcopYAZ strain accrued significantly large amounts of intracellular copper compared with the amount of copper accumulation in the wild-type strain, thereby demonstrating a role for CopYAZ in the copper efflux of S. mutans. The complementation of the CopYAZ system restored copper expulsion, membrane potential, and stress tolerance in the copYAZ-null mutant. Taking these results collectively, we have established the function of the S. mutans CopYAZ system in copper export and have further expanded knowledge on the importance of copper homeostasis and the CopYAZ system in modulating streptococcal physiology, including stress tolerance, membrane potential, genetic competence, and biofilm formation. IMPORTANCE: S. mutans is best known for its role in the initiation and progression of human dental caries, one of the most common chronic diseases worldwide. S. mutans is also implicated in bacterial endocarditis, a life-threatening inflammation of the heart valve. The core virulence factors of S. mutans include its ability to produce and sustain acidic conditions and to form a polysaccharide-encased biofilm that provides protection against environmental insults. Here, we demonstrate that the addition of copper and/or deletion of copYAZ (the copper homeostasis system) have serious implications in modulating biofilm formation, stress tolerance, and genetic transformation in S. mutans. Manipulating the pathways affected by copper and the copYAZ system may help to develop potential therapeutics to prevent S. mutans infection in and beyond the oral cavity.


Subject(s)
Biofilms/growth & development , Copper/metabolism , Operon/physiology , Streptococcus mutans/physiology , Stress, Physiological/physiology , Transformation, Genetic/physiology , Bacterial Proteins/genetics , Bacterial Proteins/metabolism , Copper/pharmacology , Gene Expression Regulation, Bacterial/physiology , Microbial Sensitivity Tests , Mutation , Streptococcus mutans/genetics
14.
Mar Biotechnol (NY) ; 17(4): 452-62, 2015 Aug.
Article in English | MEDLINE | ID: mdl-25869745

ABSTRACT

We report the genetic transformation of the planktonic diatoms Pseudo-nitzschia arenysensis and Pseudo-nitzschia multistriata, members of the widely distributed and ecologically important genus Pseudo-nitzschia. P. arenysensis and P. multistriata present the classical size reduction/restitution life cycle and can reproduce sexually. Genetic transformation was achieved with the biolistic method, using the H4 gene promoter from P. multistriata to drive expression of exogenous genes. The transformation was first optimized introducing the Sh ble gene to confer resistance to the antibiotic zeocin. Integration of the transgene was confirmed by PCR and Southern blot analyses. Subsequently, we simultaneously transformed in P. arenysensis two plasmids, one encoding the ß-glucuronidase (GUS) gene together with the plasmid carrying the Sh ble resistance gene, demonstrating the possibility of co-transformation. By transforming a gene encoding a fusion between the histone H4 and the green fluorescent protein (GFP), we demonstrated that fluorescent tagging is possible and that studies for protein localization are feasible. Importantly, we crossed P. arenysensis- and P. multistriata-transformed strains with a wild-type strain of opposite mating type and demonstrated that the transgene can be inherited in the F1 generation. The possibility to transform two diatom species for which genetic crosses are possible opens the way to a number of new approaches, including classical loss of function screens and the possibility to obtain different combinations of double transformants.


Subject(s)
Biolistics/methods , Diatoms/genetics , Transformation, Genetic/genetics , Transgenes/genetics , Bleomycin , Blotting, Southern , Crosses, Genetic , DNA Primers/genetics , Diatoms/physiology , Drug Resistance, Microbial/genetics , Green Fluorescent Proteins/genetics , Histones/genetics , Inheritance Patterns/genetics , Microscopy, Fluorescence , Plasmids/genetics , Polymerase Chain Reaction , Promoter Regions, Genetic/genetics , Reproduction/genetics , Reproduction/physiology , Species Specificity , Transformation, Genetic/physiology
15.
Curr Protoc Microbiol ; 35: 6A.4.1-12, 2014 Nov 03.
Article in English | MEDLINE | ID: mdl-25367272

ABSTRACT

Many bacteria can become naturally competent to take up extracellular DNA across their outer and inner membranes by a dedicated competence apparatus. Whereas some studies show that the DNA delivered to the cytoplasm may be used for genome repair or for nutrition, it can also be recombined onto the chromosome by homologous recombination: a process called natural transformation. Along with conjugation and transduction, natural transformation represents a mechanism for horizontal transfer of genetic material, e.g., antibiotic resistance genes, which can confer new beneficial characteristics onto the recipient bacteria. Described here are protocols for quantifying the frequency of transformation for the human pathogen Vibrio cholerae, one of several Vibrio species recently shown to be capable of natural transformation.


Subject(s)
DNA Transformation Competence/genetics , DNA, Bacterial/genetics , Transformation, Genetic/physiology , Vibrio cholerae/genetics , Biological Transport/genetics , Chitin , Gene Expression Regulation, Bacterial , Gene Transfer, Horizontal/genetics
16.
Plant Cell Rep ; 33(10): 1767-77, 2014 Oct.
Article in English | MEDLINE | ID: mdl-25063322

ABSTRACT

KEY MESSAGE: An improved Agrobacterium -mediated transformation protocol is described for a recalcitrant commercial maize elite inbred with optimized media modifications and AGL1. These improvements can be applied to other commercial inbreds. This study describes a significantly improved Agrobacterium-mediated transformation protocol in a recalcitrant commercial maize elite inbred, PHR03, using optimal co-cultivation, resting and selection media. The use of green regenerative tissue medium components, high copper and 6-benzylaminopurine, in resting and selection media dramatically increased the transformation frequency. The use of glucose in resting medium further increased transformation frequency by improving the tissue induction rate, tissue survival and tissue proliferation from immature embryos. Consequently, an optimal combination of glucose, copper and cytokinin in the co-cultivation, resting and selection media resulted in significant improvement from 2.6 % up to tenfold at the T0 plant level using Agrobacterium strain LBA4404 in transformation of PHR03. Furthermore, we evaluated four different Agrobacterium strains, LBA4404, AGL1, EHA105, and GV3101 for transformation frequency and event quality. AGL1 had the highest transformation frequency with up to 57.1 % at the T0 plant level. However, AGL1 resulted in lower quality events (defined as single copy for transgenes without Agrobacterium T-DNA backbone) when compared to LBA4404 (30.1 vs 25.6 %). We propose that these improvements can be applied to other recalcitrant commercial maize inbreds.


Subject(s)
Agrobacterium/genetics , Transformation, Genetic/physiology , Zea mays/genetics , Agrobacterium/physiology , DNA, Bacterial/genetics , Plants, Genetically Modified/genetics , Plants, Genetically Modified/microbiology , Transformation, Genetic/genetics , Zea mays/microbiology
17.
Gene ; 531(2): 205-11, 2013 Dec 01.
Article in English | MEDLINE | ID: mdl-24035935

ABSTRACT

The full-length cDNA sequence (2613 bp) of the trehalose-6-phosphate synthase (TPS) gene of eelgrass Zostera marina (ZmTPS) was identified and cloned. Z. marina is a kind of seed-plant growing in sea water during its whole life history. The open reading frame (ORF) region of ZmTPS gene encodes a protein of 870 amino acid residues and a stop codon. The corresponding genomic DNA sequence is 3770 bp in length, which contains 3 exons and 2 introns. The ZmTPS gene was transformed into rice variety ZH11 via Agrobacterium-mediated transformation method. After antibiotic screening, molecular characterization, salt-tolerance and trehalose content determinations, two transgenic lines resistant to 150 mM NaCL solutions were screened. Our study results indicated that the ZmTPS gene was integrated into the genomic DNA of the two transgenic rice lines and could be expressed well. Moreover, the detection of the transformed ZmTPS gene in the progenies of the two transgenic lines was performed from T1 to T4 generations; and results suggested that the transformed ZmTPS gene can be transmitted from parent to the progeny in transgenic rice.


Subject(s)
Glucosyltransferases/genetics , Glucosyltransferases/physiology , Oryza/genetics , Transformation, Genetic , Zosteraceae/genetics , Amino Acid Sequence , Base Sequence , Cloning, Molecular , Electric Conductivity , Glucosyltransferases/metabolism , Molecular Sequence Data , Oryza/metabolism , Phylogeny , Plants, Genetically Modified , Salt Tolerance/genetics , Transformation, Genetic/physiology , Trehalose/metabolism , Zosteraceae/enzymology
18.
Proc Natl Acad Sci U S A ; 110(1): 169-74, 2013 Jan 02.
Article in English | MEDLINE | ID: mdl-23248273

ABSTRACT

One the most intriguing, yet least studied, aspects of the bacterium-host plant interaction is the role of the host ubiquitin/proteasome system (UPS) in the infection process. Increasing evidence indicates that pathogenic bacteria subvert the host UPS to facilitate infection. Although both mammalian and plant bacterial pathogens are known to use the host UPS, the first prokaryotic F-box protein, an essential component of UPS, was identified in Agrobacterium. During its infection, which culminates in genetic modification of the host cell, Agrobacterium transfers its T-DNA--as a complex (T-complex) with the bacterial VirE2 and host VIP1 proteins--into the host cell nucleus. There the T-DNA is uncoated from its protein components before undergoing integration into the host genome. It has been suggested that the host UPS mediates this uncoating process, but there is no evidence indicating that this activity can unmask the T-DNA molecule. Here we provide support for the idea that the plant UPS uncoats synthetic T-complexes via the Skp1/Cullin/F-box protein VBF pathway and exposes the T-DNA molecule to external enzymatic activity.


Subject(s)
Agrobacterium/genetics , Bacterial Proteins/metabolism , DNA, Bacterial/metabolism , Macromolecular Substances/metabolism , Proteasome Endopeptidase Complex/metabolism , Transformation, Genetic/physiology , Active Transport, Cell Nucleus , Arabidopsis Proteins/metabolism , Blotting, Western , DNA Primers/genetics , DNA-Binding Proteins/metabolism , Host-Pathogen Interactions/physiology , Ion Channels/metabolism , Reverse Transcriptase Polymerase Chain Reaction , Nicotiana
19.
J Biol Chem ; 287(11): 8484-94, 2012 Mar 09.
Article in English | MEDLINE | ID: mdl-22253437

ABSTRACT

DNA translocators of natural transformation systems are complex systems critical for the uptake of free DNA and provide a powerful mechanism for adaptation to changing environmental conditions. In natural transformation machineries, outer membrane secretins are suggested to form a multimeric pore for the uptake of external DNA. Recently, we reported on a novel structure of the DNA translocator secretin complex, PilQ, in Thermus thermophilus HB27 comprising a stable cone and cup structure and six ring structures with a large central channel. Here, we report on structural and functional analyses of a set of N-terminal PilQ deletion derivatives in T. thermophilus HB27. We identified 136 N-terminal residues exhibiting an unusual ααßαßßα fold as a ring-building domain. Deletion of this domain had a dramatic effect on twitching motility, adhesion, and piliation but did not abolish natural transformation. These findings provide clear evidence that the pilus structures of T. thermophilus are not essential for natural transformation. The truncated complex was not affected in inner and outer membrane association, indicating that the 136 N-terminal residues are not essential for membrane targeting. Analyses of complex formation of the truncated PilQ monomers revealed that the region downstream of residue 136 is required for multimerization, and the region downstream of residue 207 is essential for monomer stability. Possible implications of our findings for the mechanism of DNA uptake are discussed.


Subject(s)
Fimbriae Proteins/chemistry , Protein Folding , Thermus thermophilus/chemistry , DNA, Bacterial/genetics , DNA, Bacterial/metabolism , Fimbriae Proteins/genetics , Fimbriae Proteins/metabolism , Protein Structure, Secondary , Protein Structure, Tertiary , Protein Transport/physiology , Thermus thermophilus/genetics , Thermus thermophilus/metabolism , Transformation, Genetic/physiology
20.
PLoS One ; 7(12): e53023, 2012.
Article in English | MEDLINE | ID: mdl-23285250

ABSTRACT

We evaluated transgenic tobacco plants as an alternative to Escherichia coli for the production of recombinant human complement factor 5a (C5a). C5a has not been expressed in plants before and is highly unstable in vivo in its native form, so it was necessary to establish the most suitable subcellular targeting strategy. We used the strong and constitutive CaMV 35S promoter to drive transgene expression and compared three different subcellular compartments. The yields of C5a in the T(0) transgenic plants were low in terms of the proportion of total soluble protein (TSP) when targeted to the apoplast (0.0002% TSP) or endoplasmic reticulum (0.0003% TSP) but was one order of magnitude higher when targeted to the vacuole (0.001% TSP). The yields could be increased by conventional breeding (up to 0.014% TSP in the T2 generation). C5a accumulated to the same level in seeds and leaves when targeted to the apoplast but was up to 1.7-fold more abundant in the seeds when targeted to the ER or vacuole, although this difference was less striking in the better-performing lines. When yields were calculated as an amount per gram fresh weight of transgenic plant tissue, the vacuole targeting strategy was clearly more efficient in seeds, reaching 35.8 µg C5a per gram of fresh seed weight compared to 10.62 µg C5a per gram fresh weight of leaves. Transient expression of C5aER and C5aVac in N. benthamiana, using MagnICON vectors, reached up to 0.2% and 0.7% of TSP, respectively, but was accompanied by cytotoxic effects and induced leaf senescence. Western blot of the plant extracts revealed a band matching the corresponding glycosylated native protein and the bioassay demonstrated that recombinant C5a was biologically active.


Subject(s)
Complement C5a/genetics , Intracellular Space/metabolism , Nicotiana/genetics , Nicotiana/metabolism , Recombinant Proteins/genetics , Agrobacterium tumefaciens , Complement C5a/metabolism , Escherichia coli , Feasibility Studies , Gene Expression Regulation, Plant/physiology , Gene Targeting/methods , Genes, Reporter/genetics , Humans , Intracellular Space/genetics , Plants, Genetically Modified , Recombinant Proteins/metabolism , Species Specificity , Tobacco Mosaic Virus/genetics , Transformation, Genetic/physiology
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