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1.
Methods Mol Biol ; 1924: 53-61, 2019.
Article in English | MEDLINE | ID: mdl-30694467

ABSTRACT

The liverwort species, Marchantia polymorpha, shows environment-dependent morphological plasticity throughout its life cycle. Thalli, representing the predominant body form throughout most of this bryophyte's life cycle, grow with repeated dichotomous branching at the apex and develop horizontally under sufficient light intensity. Spores, after germination, produce a mass of cells, called sporelings, which then grow into thalli. Both thalli and sporelings, if grown under weak light conditions, form narrow shapes, and their apices grow toward the light source. These phototropic responses are specific to blue light and dependent on the blue-light receptor phototropin. This chapter provides several basic procedures, along with some tips, for designing and performing experiments with M. polymorpha to observe their phototropic responses, as well as methods for observing the localization of the phototropin "Mpphot" with a fluorescent protein tag.


Subject(s)
Light , Marchantia/radiation effects , Plants, Genetically Modified/radiation effects , Transformation, Genetic/radiation effects , Marchantia/genetics , Plants, Genetically Modified/genetics , Transformation, Genetic/genetics
2.
Plant Cell Physiol ; 57(10): 2020-2028, 2016 Oct.
Article in English | MEDLINE | ID: mdl-27497446

ABSTRACT

C4 photosynthesis exhibits efficient CO2 assimilation in ambient air by concentrating CO2 around ribulose 1,5-bisphosphate carboxylase/oxygenase (Rubisco) through a metabolic pathway called the C4 cycle. It has been suggested that cyclic electron flow (CEF) around PSI mediated by chloroplast NADH dehydrogenase-like complex (NDH), an alternative pathway of photosynthetic electron transport (PET), plays a crucial role in C4 photosynthesis, although the contribution of NDH-mediated CEF is small in C3 photosynthesis. Here, we generated NDH-suppressed transformants of a C4 plant, Flaveria bidentis, and showed that the NDH-suppressed plants grow poorly, especially under low-light conditions. CO2 assimilation rates were consistently decreased in the NDH-suppressed plants under low and medium light intensities. Measurements of non-photochemical quenching (NPQ) of Chl fluorescence, the oxidation state of the reaction center of PSI (P700) and the electrochromic shift (ECS) of pigment absorbance indicated that proton translocation across the thylakoid membrane is impaired in the NDH-suppressed plants. Since proton translocation across the thylakoid membrane induces ATP production, these results suggest that NDH-mediated CEF plays a role in the supply of ATP which is required for C4 photosynthesis. Such a role is more crucial when the light that is available for photosynthesis is limited and the energy production by PET becomes rate-determining for C4 photosynthesis. Our results demonstrate that the physiological contribution of NDH-mediated CEF is greater in C4 photosynthesis than in C3 photosynthesis, suggesting that the mechanism of PET in C4 photosynthesis has changed from that in C3 photosynthesis accompanying the changes in the mechanism of CO2 assimilation.


Subject(s)
Carbon/metabolism , Flaveria/enzymology , NADH Dehydrogenase/metabolism , Photosynthesis , Photosystem I Protein Complex/metabolism , Plant Proteins/metabolism , Carbon Dioxide/metabolism , Electron Transport/radiation effects , Flaveria/growth & development , Flaveria/radiation effects , Light , Photosynthesis/radiation effects , Plant Leaves/metabolism , Plant Leaves/radiation effects , RNA Interference , Spectrum Analysis , Suppression, Genetic/radiation effects , Transformation, Genetic/radiation effects
3.
Plant Cell Physiol ; 57(10): 2104-2121, 2016 Oct.
Article in English | MEDLINE | ID: mdl-27440549

ABSTRACT

The role of ascorbate (AsA) recycling via dehydroascorbate reductase (DHAR) in the tolerance of Chlamydomonas reinhardtii to photo-oxidative stress was examined. The activity of DHAR and the abundance of the CrDHAR1 (Cre10.g456750) transcript increased after moderate light (ML; 750 µmol m-2 s-1) or high light (HL; 1,800 µmol m-2 s-1) illumination, accompanied by dehydroascorbate (DHA) accumulation, decreased AsA redox state, photo-inhibition, lipid peroxidation, H2O2 overaccumulation, growth inhibition and cell death. It suggests that DHAR and AsA recycling is limiting under high-intensity light stress. The CrDHAR1 gene was cloned and its recombinant CrDHAR1 protein was a monomer (25 kDa) detected by Western blot that exhibits an enzymatic activity of 965 µmol min-1 mg-1 protein. CrDHAR1 was overexpressed driven by a HSP70A:RBCS2 fusion promoter or down-regulated by artificial microRNA (amiRNA) to examine whether DHAR-mediated AsA recycling is critical for the tolerance of C. reinahartii cells to photo-oxidative stress. The overexpression of CrDHAR1 increased DHAR protein abundance and enzyme activity, AsA pool size, AsA:DHA ratio and the tolerance to ML-, HL-, methyl viologen- or H2O2-induced oxidative stress. The CrDHAR1-knockdown amiRNA lines that have lower DHAR expression and AsA recycling ability were sensitive to high-intensity illumination and oxidative stress. The glutathione pool size, glutathione:oxidized glutathione ratio and glutathione reductase and ascorbate peroxidase activities were increased in CrDHAR1-overexpressing cells and showed a further increase after high-intensity illumination but decreased in wild-type cells after light stress. The present results suggest that increasing AsA regeneration via enhanced DHAR activity modulates the ascorbate-glutathione cycle activity in C. reinhardtii against photo-oxidative stress.


Subject(s)
Adaptation, Physiological/radiation effects , Ascorbic Acid/metabolism , Chlamydomonas reinhardtii/enzymology , Chlamydomonas reinhardtii/radiation effects , Light , Oxidative Stress/radiation effects , Oxidoreductases/metabolism , Adaptation, Physiological/drug effects , Base Sequence , Chlorophyll/metabolism , Chlorophyll A , Down-Regulation/genetics , Fluorescence , Gene Expression Regulation, Plant/drug effects , Gene Expression Regulation, Plant/radiation effects , Glutathione/metabolism , Hydrogen Peroxide/toxicity , Paraquat/toxicity , RNA, Messenger/genetics , RNA, Messenger/metabolism , Transformation, Genetic/drug effects , Transformation, Genetic/radiation effects
4.
J Exp Bot ; 67(8): 2495-506, 2016 Apr.
Article in English | MEDLINE | ID: mdl-26969746

ABSTRACT

Plant chloroplasts are light-driven cell factories that have great potential to act as a chassis for metabolic engineering applications. Using plant chloroplasts, we demonstrate how photosynthetic reducing power can drive a metabolic pathway to synthesise a bio-active natural product. For this purpose, we stably engineered the dhurrin pathway from Sorghum bicolor into the chloroplasts of Nicotiana tabacum (tobacco). Dhurrin is a cyanogenic glucoside and its synthesis from the amino acid tyrosine is catalysed by two membrane-bound cytochrome P450 enzymes (CYP79A1 and CYP71E1) and a soluble glucosyltransferase (UGT85B1), and is dependent on electron transfer from a P450 oxidoreductase. The entire pathway was introduced into the chloroplast by integrating CYP79A1, CYP71E1, and UGT85B1 into a neutral site of the N. tabacum chloroplast genome. The two P450s and the UGT85B1 were functional when expressed in the chloroplasts and converted endogenous tyrosine into dhurrin using electrons derived directly from the photosynthetic electron transport chain, without the need for the presence of an NADPH-dependent P450 oxidoreductase. The dhurrin produced in the engineered plants amounted to 0.1-0.2% of leaf dry weight compared to 6% in sorghum. The results obtained pave the way for plant P450s involved in the synthesis of economically important compounds to be engineered into the thylakoid membrane of chloroplasts, and demonstrate that their full catalytic cycle can be driven directly by photosynthesis-derived electrons.


Subject(s)
Biosynthetic Pathways , Chloroplasts/metabolism , Chloroplasts/radiation effects , Cytochrome P-450 Enzyme System/metabolism , Light , Nicotiana/genetics , Nitriles/metabolism , Sorghum/enzymology , Biomass , Biosynthetic Pathways/genetics , Biosynthetic Pathways/radiation effects , Chloroplasts/ultrastructure , Chromatography, Liquid , Gene Expression Regulation, Enzymologic/radiation effects , Genome, Chloroplast , Genome, Plant , Glucosides/metabolism , Mass Spectrometry , Operon/genetics , Phenotype , Photosynthesis/radiation effects , Plants, Genetically Modified , Protein Subunits/metabolism , Transformation, Genetic/radiation effects
5.
PLoS One ; 7(6): e39720, 2012.
Article in English | MEDLINE | ID: mdl-22768112

ABSTRACT

Targeted gene replacement to generate knock-outs and knock-ins is a commonly used method to study the function of unknown genes. In the methylotrophic yeast Pichia pastoris, the importance of specific gene targeting has increased since the genome sequencing projects of the most commonly used strains have been accomplished, but rapid progress in the field has been impeded by inefficient mechanisms for accurate integration. To improve gene targeting efficiency in P. pastoris, we identified and deleted the P. pastoris KU70 homologue. We observed a substantial increase in the targeting efficiency using the two commonly known and used integration loci HIS4 and ADE1, reaching over 90% targeting efficiencies with only 250-bp flanking homologous DNA. Although the ku70 deletion strain was noted to be more sensitive to UV rays than the corresponding wild-type strain, no lethality, severe growth retardation or loss of gene copy numbers could be detected during repetitive rounds of cultivation and induction of heterologous protein production. Furthermore, we demonstrated the use of the ku70 deletion strain for fast and simple screening of genes in the search of new auxotrophic markers by targeting dihydroxyacetone synthase and glycerol kinase genes. Precise knock-out strains for the well-known P. pastoris AOX1, ARG4 and HIS4 genes and a whole series of expression vectors were generated based on the wild-type platform strain, providing a broad spectrum of precise tools for both intracellular and secreted production of heterologous proteins utilizing various selection markers and integration strategies for targeted or random integration of single and multiple genes. The simplicity of targeted integration in the ku70 deletion strain will further support protein production strain generation and synthetic biology using P. pastoris strains as platform hosts.


Subject(s)
Antigens, Nuclear/genetics , DNA-Binding Proteins/genetics , Fungal Proteins/genetics , Gene Deletion , Gene Expression Regulation, Fungal , Pichia/genetics , Sequence Homology, Amino Acid , Synthetic Biology/methods , DNA Damage , Fungal Proteins/metabolism , Gene Expression Regulation, Fungal/radiation effects , Gene Targeting , Genes, Fungal/genetics , Genetic Markers , Genetic Vectors , Glycerol/metabolism , Homologous Recombination/genetics , Homologous Recombination/radiation effects , Ku Autoantigen , Metabolic Networks and Pathways/genetics , Metabolic Networks and Pathways/radiation effects , Transformation, Genetic/radiation effects , Ultraviolet Rays
6.
J Appl Genet ; 53(3): 355-62, 2012 Aug.
Article in English | MEDLINE | ID: mdl-22562375

ABSTRACT

Filamentous fungi from the marine environment have shown great potential as cell factories for the production of pharmacologically active metabolites, but extremely low frequency of homologous recombination brings difficulty to further molecular biology studies. To bypass this problem and develop a highly efficient gene targeting system in marine-derived filamentous fungus Aspergillus glaucus, LigD, a homolog of Neurospora crassa Mus-53 which is considered to play a significant role in nonhomologous end joining (NHEJ), was coloned and deleted, and frequency of targeted gene replacement (TGR) increased dramatically from <2% to 85% in comparison with that in the wild type, when containing 1000 bp of homologous flanking sequence. Such results strongly indicate that AgLigD is indeed involved in the repair of NHEJ in A. glaucus and functions in this pathway. Furthermore, the AgLigD-defective mutant has no discernible differences with wild type regarding sensitivity to mutagens and UV, growth characteristics and transformation frequency. The AgligD-deficient transformant, as the first NHEJ-defective mutant in the field of marine-derived filamentous fungus, will help in expediting studies of molecular biology of marine-derived microorganisms.


Subject(s)
Aquatic Organisms/genetics , Aspergillus/genetics , Gene Targeting/methods , Genes, Fungal/genetics , Mutation/genetics , Aquatic Organisms/cytology , Aquatic Organisms/radiation effects , Aspergillus/cytology , Aspergillus/drug effects , Aspergillus/radiation effects , DNA End-Joining Repair/drug effects , DNA End-Joining Repair/radiation effects , Genetic Loci/genetics , Hydroxyurea/toxicity , Methyl Methanesulfonate/toxicity , Phenotype , Sequence Homology, Nucleic Acid , Transformation, Genetic/drug effects , Transformation, Genetic/radiation effects , Ultraviolet Rays
7.
DNA Repair (Amst) ; 11(4): 410-8, 2012 Apr 01.
Article in English | MEDLINE | ID: mdl-22321371

ABSTRACT

Deinococcus radiodurans exhibits extraordinary resistance to the lethal effect of DNA-damaging agents, a characteristic attributed to its highly proficient DNA repair capacity. Although the D. radiodurans genome is clearly devoid of recBC and addAB counterparts as RecA mediators, the genome possesses all genes associated with the RecFOR pathway. In an effort to gain insights into the role of D. radiodurans RecFOR proteins in homologous recombination, we generated recF, recO and recR disruptant strains and characterized the disruption effects. All the disruptant strains exhibited delayed growth relative to the wild-type, indicating that the RecF, RecO and RecR proteins play an important role in cell growth under normal growth conditions. A slight reduction in transformation efficiency was observed in the recF and recO disruptant strains compared to the wild-type strain. Interestingly, disruption of recR resulted in severe reduction of the transformation efficiency. On the other hand, the recF disruptant strain was the most sensitive phenotype to γ rays, UV irradiation and mitomycin C among the three disruptants. In the recF disruptant strain, the intracellular level of the LexA1 protein did not decrease following γ irradiation, suggesting that a large amount of the RecA protein remains inactive despite being induced. These results demonstrate that the RecF protein plays a crucial role in the homologous recombination repair process by facilitating RecA activation in D. radiodurans. Thus, the RecF and RecR proteins are involved in the RecA activation and the stability of incoming DNA, respectively, during RecA-mediated homologous recombination processes that initiated the ESDSA pathway in D. radiodurans. Possible mechanisms that involve the RecFOR complex in homologous intermolecular recombination and homologous recombination repair processes are also discussed.


Subject(s)
Bacterial Proteins/metabolism , DNA-Binding Proteins/metabolism , Deinococcus/genetics , Deinococcus/metabolism , Homologous Recombination , Bacterial Proteins/genetics , Cell Proliferation/drug effects , Cell Proliferation/radiation effects , DNA Repair/drug effects , DNA Repair/genetics , DNA Repair/radiation effects , DNA, Bacterial/genetics , DNA, Bacterial/metabolism , DNA-Binding Proteins/genetics , Deinococcus/drug effects , Deinococcus/radiation effects , Gamma Rays , Homologous Recombination/drug effects , Homologous Recombination/genetics , Homologous Recombination/radiation effects , Intracellular Space/drug effects , Intracellular Space/genetics , Intracellular Space/radiation effects , Mitomycin/pharmacology , Mutagenesis , Serine Endopeptidases/metabolism , Transformation, Genetic/drug effects , Transformation, Genetic/genetics , Transformation, Genetic/radiation effects , Ultraviolet Rays
8.
Mol Plant Pathol ; 13(2): 123-34, 2012 Feb.
Article in English | MEDLINE | ID: mdl-21726402

ABSTRACT

Plants defend themselves against potential pathogens via the recognition of pathogen-associated molecular patterns (PAMPs). However, the molecular mechanisms underlying this PAMP-triggered immunity (PTI) are largely unknown. In this study, we show that tomato HP1/DDB1, coding for a key component of the CUL4-based ubiquitin E3 ligase complex, is required for resistance to Agrobacterium tumefaciens. We found that the DDB1-deficient mutant (high pigment-1, hp1) is susceptible to nontumorigenic A. tumefaciens. The efficiency of callus generation from the hp1 cotyledons was extremely low as a result of the necrosis caused by Agrobacterium infection. On infiltration of nontumorigenic A. tumefaciens into leaves, the hp1 mutant moderately supported Agrobacterium growth and developed disease symptoms, but the expression of the pathogenesis-related gene SlPR1a1 and several PTI marker genes was compromised at different levels. Moreover, exogenous application of salicylic acid (SA) triggered SlPR1a1 gene expression and enhanced resistance to A. tumefaciens in wild-type tomato plants, whereas these SA-regulated defence responses were abolished in hp1 mutant plants. Thus, HP1/DDB1 may function through interaction with the SA-regulated PTI pathway in resistance against Agrobacterium infection.


Subject(s)
Agrobacterium tumefaciens/physiology , Disease Resistance/genetics , Gene Expression Regulation, Plant , Plant Diseases/microbiology , Plant Proteins/metabolism , Solanum lycopersicum/genetics , Solanum lycopersicum/microbiology , Agrobacterium tumefaciens/drug effects , Agrobacterium tumefaciens/growth & development , Agrobacterium tumefaciens/radiation effects , Cotyledon/drug effects , Cotyledon/microbiology , Cotyledon/radiation effects , Disease Resistance/drug effects , Disease Resistance/radiation effects , Gene Expression Regulation, Plant/drug effects , Gene Expression Regulation, Plant/radiation effects , Genes, Plant/genetics , Solanum lycopersicum/drug effects , Solanum lycopersicum/radiation effects , Mutation/genetics , Plant Leaves/drug effects , Plant Leaves/genetics , Plant Leaves/microbiology , Plant Leaves/radiation effects , Plant Proteins/genetics , Plant Tumors/microbiology , Salicylic Acid/pharmacology , Transformation, Genetic/drug effects , Transformation, Genetic/radiation effects , Ultraviolet Rays
9.
Methods Mol Biol ; 813: 187-93, 2012.
Article in English | MEDLINE | ID: mdl-22083743

ABSTRACT

An important basic requirement of synthetic genetic networks is the option of external control of gene expression. Although several chemically inducible systems are available, all of these suffer from the common problem: the chemical inducers are difficult to remove so that to terminate the response. We have described a regulatory expression system for yeast, which employs light as inducer. This light switch translates light-controlled protein-protein interactions into the transcription of selected genes in a dose-dependent and reversible manner.


Subject(s)
Light , Saccharomyces cerevisiae/genetics , Saccharomyces cerevisiae/radiation effects , Arabidopsis Proteins/genetics , Galactokinase/genetics , Gene Expression/radiation effects , Phytochrome/genetics , Promoter Regions, Genetic/genetics , Recombinant Fusion Proteins/genetics , Saccharomyces cerevisiae/cytology , Saccharomyces cerevisiae Proteins/genetics , Transcription, Genetic/radiation effects , Transformation, Genetic/radiation effects
10.
PLoS One ; 6(11): e27536, 2011.
Article in English | MEDLINE | ID: mdl-22132108

ABSTRACT

One way in which cells communicate is through the direct transfer of proteins. In plants, many of these proteins are transcription factors, which are made by one cell type and traffic into another. In order to understand how this movement occurs and its role in development, we would like to track this movement in live, intact plants in real-time. Here we examine the utility of the photoconvertible proteins, Dendra2 and (to a lesser extent) EosFP as tags for studying intracellular and intercellular protein movement in the Arabidopsis root. To this end, we made fusions between Dendra2 and six mobile transcription factors. Our results show that Dendra2 is an effective tool for studying protein movement between plant cells. Interestingly, we found that Dendra2 could not simply be swapped into existing constructs that had originally contained GFP. Most of the fusions made in this way failed to produce a fluorescent fusion. In addition we found that the optimal settings for photoconversion of Dendra2 in stably transformed roots were different from what has been published for photoconversion in transient assays in plants or in animal cells. By modifying the confocal setting, we were able to photoconvert Dendra2 in all cell layers in the root. However the efficiency of photoconversion was affected by the position of the cell layer within the root, with more internal tissues requiring more energy. By examining the Dendra2 fusions, we confirmed the mobility of the SHORT-ROOT (SHR) and CAPRICE (CPC) transcription factors between cells and we further discovered that SHR movement in stele and CPC movement in the epidermis are non-directional.


Subject(s)
Arabidopsis Proteins/metabolism , Arabidopsis/metabolism , Arabidopsis/radiation effects , Extracellular Space/metabolism , Light , Luminescent Proteins/metabolism , Plant Roots/metabolism , Arabidopsis/cytology , Arabidopsis/genetics , Extracellular Space/radiation effects , Plant Roots/cytology , Plant Roots/radiation effects , Plants, Genetically Modified , Protein Transport/radiation effects , Recombinant Fusion Proteins/metabolism , Transformation, Genetic/radiation effects
11.
Mol Biol Rep ; 38(3): 1813-9, 2011 Mar.
Article in English | MEDLINE | ID: mdl-20872075

ABSTRACT

Tocochromanols, usually known as vitamin E, play a crucial role in human and animal nutrition. The enzyme homogentisate phytyltransferase (HPT) performs the first committed step of the vitamin E biosynthetic pathway. The full-length cDNA encoding HPT was isolated from Lactuca sativa L. by rapid amplification of cDNA ends (RACE). The cDNA, designated as LsHPT, was 1,670 bp long containing an open reading frame (ORF) of 1,185 bp which encoded a protein of 395 amino acids. Sequence analysis indicated that the deduced protein, named as LsHPT, shared high identity with other dicotyledonous HPTs. Real-time fluorescent quantitative PCR (qPCR) analysis revealed that LsHPT was preferentially expressed in mature leaves compared with other tissues. When lettuce plants were subjected to drought and high-light stress treatments, LsHPT expression was markedly increased. Expression of LsHPT in Arabidopsis showed that LsHPT could enhance the α-tocopherol biosynthesis in Arabidopsis. Transient expression of LsHPT via agroinfiltration resulted in 9-fold increase in LsHPT mRNA level and nearly 18-fold enhancement in α-tocopherol content compared with the negative controls.


Subject(s)
Alkyl and Aryl Transferases/genetics , Genes, Plant/genetics , Lactuca/enzymology , Lactuca/genetics , Arabidopsis/enzymology , Arabidopsis/genetics , Arabidopsis/radiation effects , Droughts , Gene Expression Profiling , Gene Expression Regulation, Enzymologic/radiation effects , Gene Expression Regulation, Plant/radiation effects , Lactuca/radiation effects , Light , RNA, Messenger/genetics , RNA, Messenger/metabolism , Rhizobium/physiology , Rhizobium/radiation effects , Sequence Analysis, DNA , Stress, Physiological/genetics , Stress, Physiological/radiation effects , Transformation, Genetic/radiation effects
12.
Plant Biotechnol J ; 9(3): 348-58, 2011 Apr.
Article in English | MEDLINE | ID: mdl-20731786

ABSTRACT

Photosensitizers are common in nature and play diverse roles as defense compounds and pathogenicity determinants and as important molecules in many biological processes. Toxoflavin, a photosensitizer produced by Burkholderia glumae, has been implicated as an essential virulence factor causing bacterial rice grain rot. Toxoflavin produces superoxide and H2O2 during redox cycles under oxygen and light, and these reactive oxygen species cause phytotoxic effects. To utilize toxoflavin as a selection agent in plant transformation, we identified a gene, tflA, which encodes a toxoflavin-degrading enzyme in the Paenibacillus polymyxa JH2 strain. TflA was estimated as 24.56 kDa in size based on the amino acid sequence and is similar to a ring-cleavage extradiol dioxygenase in the Exiguobacterium sp. 255-15; however, unlike other extradiol dioxygenases, Mn(2+) and dithiothreitol were required for toxoflavin degradation by TflA. Here, our results suggested toxoflavin is a photosensitizer and its degradation by TflA serves as a light-dependent selection marker system in diverse plant species. We examined the efficiencies of two different plant selection systems, toxoflavin/tflA and hygromycin/hygromycin phosphotransferase (hpt) in both rice and Arabidopsis. The toxoflavin/tflA selection was more remarkable than hygromycin/hpt selection in the high-density screening of transgenic Arabidopsis seeds. Based on these results, we propose the toxoflavin/tflA selection system, which is based on the degradation of the photosensitizer, provides a new robust nonantibiotic selection marker system for diverse plants.


Subject(s)
Genetic Techniques , Light , Plants/radiation effects , Arabidopsis/drug effects , Arabidopsis/genetics , Biomarkers/metabolism , Cinnamates/pharmacology , Genes, Bacterial/genetics , Hygromycin B/analogs & derivatives , Hygromycin B/pharmacology , Oryza/drug effects , Oryza/genetics , Paenibacillus/drug effects , Paenibacillus/enzymology , Paenibacillus/genetics , Phosphotransferases (Alcohol Group Acceptor)/metabolism , Plant Leaves/drug effects , Plant Leaves/metabolism , Plant Leaves/radiation effects , Plants/drug effects , Plants/metabolism , Plants, Genetically Modified , Pyrimidinones/chemistry , Pyrimidinones/pharmacology , Recombinant Fusion Proteins/metabolism , Transformation, Genetic/drug effects , Transformation, Genetic/radiation effects , Triazines/chemistry , Triazines/pharmacology
13.
Plant Physiol ; 151(4): 1930-42, 2009 Dec.
Article in English | MEDLINE | ID: mdl-19837819

ABSTRACT

SIZ1 (for yeast SAP and MIZ1) encodes the sole ortholog of mammalian PIAS (for protein inhibitor of activated STAT) and yeast SIZ SUMO (for small ubiquitin-related modifier) E3 ligases in Arabidopsis (Arabidopsis thaliana). Four conserved motifs in SIZ1 include SAP (for scaffold attachment factor A/B/acinus/PIAS domain), PINIT (for proline-isoleucine-asparagine-isoleucine-threonine), SP-RING (for SIZ/PIAS-RING), and SXS (for serine-X-serine, where X is any amino acid) motifs. SIZ1 contains, in addition, a PHD (for plant homeodomain) typical of plant PIAS proteins. We determined phenotypes of siz1-2 knockout mutants transformed with SIZ1 alleles carrying point mutations in the predicted domains. Domain SP-RING is required for SUMO conjugation activity and nuclear localization of SIZ1. Salicylic acid (SA) accumulation and SA-dependent phenotypes of siz1-2, such as diminished plant size, heightened innate immunity, and abscisic acid inhibition of cotyledon greening, as well as SA-independent basal thermotolerance were not complemented by the altered SP-RING allele of SIZ1. The SXS domain also controlled SA accumulation and was involved in greening and expansion of cotyledons of seedlings germinated in the presence of abscisic acid. Mutations of the PHD zinc finger domain and the PINIT motif affected in vivo SUMOylation. Expression of the PHD and/or PINIT domain mutant alleles of SIZ1 in siz1-2 promoted hypocotyl elongation in response to sugar and light. The various domains of SIZ1 make unique contributions to the plant's ability to cope with its environment.


Subject(s)
Abscisic Acid/pharmacology , Arabidopsis Proteins/chemistry , Arabidopsis Proteins/metabolism , Arabidopsis/drug effects , Arabidopsis/enzymology , Ligases/chemistry , Ligases/metabolism , Salicylic Acid/pharmacology , Stress, Physiological/drug effects , Adaptation, Physiological/drug effects , Adaptation, Physiological/radiation effects , Arabidopsis/radiation effects , Carbohydrates/pharmacology , Cotyledon/drug effects , Cotyledon/enzymology , Cotyledon/radiation effects , Genetic Complementation Test , Germination/drug effects , Germination/radiation effects , Heat-Shock Response/drug effects , Heat-Shock Response/radiation effects , Hypocotyl/anatomy & histology , Hypocotyl/drug effects , Hypocotyl/enzymology , Hypocotyl/radiation effects , Light , Models, Biological , Mutation/genetics , Phenotype , Plant Leaves/cytology , Plant Leaves/drug effects , Plant Leaves/enzymology , Protein Structure, Tertiary , Stress, Physiological/radiation effects , Structure-Activity Relationship , Temperature , Transformation, Genetic/drug effects , Transformation, Genetic/radiation effects
14.
J Environ Radioact ; 97(2-3): 159-67, 2007.
Article in English | MEDLINE | ID: mdl-17544184

ABSTRACT

Extracellular DNA is omnipresent in aquatic environments and is thought to be a genetic material for horizontal gene transformation between microorganisms. We studied the impact of gamma irradiation on the transformation efficiency (transformants number per ng of DNA per ml) of extracellular DNA. Plasmid pEGFP as a model extracellular DNA was irradiated by gamma rays. The transformation efficiency decreased with the increase in radiation dose. A total dose of 10Gy is normally not lethal for microorganisms but certainly affects the transformation efficiency of extracellular DNA. The decrease in the efficiency would be induced by strand breaks of extracellular DNA because the yield of both single-strand breaks (SSBs) and double-strand breaks (DSBs) increased with the increase in radiation dose. The relative transformation efficiency of SSBs and DSBs to that of covalently closed circles (CCCs) was 30.3% and 0.2%, respectively. This impact on natural transformation suggests an inability of microorganisms to acquire new characteristics which should be normally acquired.


Subject(s)
DNA/radiation effects , Gamma Rays , Plasmids/genetics , DNA Damage , Escherichia coli/genetics , Transformation, Genetic/radiation effects
15.
Plant Physiol ; 133(2): 736-47, 2003 Oct.
Article in English | MEDLINE | ID: mdl-12972658

ABSTRACT

In this article, we report the isolation of plant protoporphyrinogen oxidase (PPO) genes and the isolation of herbicide-tolerant mutants. Subsequently, an Arabidopsis double mutant (Y426M + S305L) was used to develop a selectable marker system for Agrobacterium tumefaciens-mediated transformation of maize (Zea mays) and to obtain multiple events tolerant to the PPO family of herbicides. Maize transformants were produced via butafenacil selection using a flexible light regime to increase selection pressure. Butafenacil selection per se did not change transgene copy number distribution relative to other selectable marker systems, but the most tolerant events identified in the greenhouse were more likely to contain multiple copies of the introduced mutant PPO gene. To date, more than 2,500 independent transgenic maize events have been produced using butafenacil selection. The high frequency of A. tumefaciens-mediated transformation via PPO selection enabled us to obtain single-copy transgenic maize lines tolerant to field levels of butafenacil.


Subject(s)
Agrobacterium tumefaciens/enzymology , Oxidoreductases Acting on CH-CH Group Donors/genetics , Zea mays/genetics , Arabidopsis/enzymology , Arabidopsis/genetics , Genetic Complementation Test , Light , Plant Proteins/genetics , Plants, Genetically Modified/genetics , Protoporphyrinogen Oxidase , Selection, Genetic , Transformation, Genetic/radiation effects
16.
Biotechniques ; 35(1): 78-80, 82-3, 2003 Jul.
Article in English | MEDLINE | ID: mdl-12866409

ABSTRACT

Dictyostelium discoideum has been used as a genetically tractable model organism to study many biological phenomena. High-efficiency transformation is a prerequisite for successful genetic screens such as mutant complementation, identification of suppressor genes, or insertional mutagenesis. Although exponential decay electroporation is the standard transformation technique for D. discoideum, its efficiency is relatively low and its reproducibility is weak. Here we optimized the oscillating electroporation technique for D. discoideum transformation and compared it to the exponential decay electroporation. A 20-fold increase in the efficiency was resproducibly achieved. This alternative electroporation technique should facilitate future genetic approaches in D. discoideum.


Subject(s)
DNA/administration & dosage , DNA/pharmacokinetics , Dictyostelium/physiology , Dictyostelium/radiation effects , Drug Delivery Systems/methods , Electromagnetic Fields , Electroporation/methods , Transformation, Genetic/radiation effects , Adaptation, Physiological/physiology , Animals , Cells, Cultured , Dose-Response Relationship, Radiation , Gene Transfer Techniques , Oscillometry/methods , Radiation Dosage
17.
Mutat Res ; 429(1): 27-35, 1999 Aug 11.
Article in English | MEDLINE | ID: mdl-10434022

ABSTRACT

Oxidative radicals, which are produced during ionizing irradiation of DNA in water, damage the DNA and may result in mutations, which are in general randomly distributed. Alternatively, the addition of transition metal ions, like iron or copper, to DNA in combination with H(2)O(2) and a reducing agent also results in the production of oxidative radicals. Due to binding of the transition metal ions to DNA, the production of these radicals is very local, and results in a mutational spectrum in which the mutations are not randomly distributed. If transition metal ions are complexed to the DNA during irradiation, and react with radiation-induced species such as hydrogen peroxide, site-specific formation of.OH radicals on these sites may occur, leading to the formation of mutational hot spots. This study examines the influence of the presence of traces of iron or copper ions during gamma-irradiation of plasmid DNA in water, on the possible formation of mutational hot spots in the lacI gene. Comparison of the mutational spectra, after irradiation in the presence or in the absence of transition metal ions, shows that there are indeed relatively more positions in the lacI gene where more than one mutation occurs, suggesting formation of mutational hot spots in the presence of transition metal ions. However, the appearance of these hot spots is rather weak. Although in all three mutational spectra G:C to A:T mutations are predominant, there are also some differences between the types of mutations in these spectra. These differences in mutational spectra might reflect the different preferences of iron and copper ions to bind specific sites in the DNA. Indeed, there appears to be a high association of mutations at CC or GG sites in the mutational spectrum in the presence of copper ions, confirming the observation that copper binds preferably at two adjacent guanines in the DNA. It can be concluded from this study that the presence of small amounts of transition metal ions during gamma-irradiation influences the types and distribution of gamma-radiation-induced mutations, although no major mutational hot spots can be observed.


Subject(s)
Bacterial Proteins/genetics , Copper/pharmacology , Escherichia coli Proteins , Iron/pharmacology , Repressor Proteins/genetics , Base Pairing/drug effects , Base Pairing/genetics , Base Pairing/radiation effects , DNA, Bacterial/drug effects , DNA, Bacterial/radiation effects , Dose-Response Relationship, Radiation , Escherichia coli/drug effects , Escherichia coli/genetics , Escherichia coli/radiation effects , Ferrous Compounds/pharmacology , Gamma Rays , Lac Repressors , Mutation/drug effects , Mutation/radiation effects , Plasmids/drug effects , Plasmids/genetics , Plasmids/radiation effects , Transformation, Genetic/drug effects , Transformation, Genetic/radiation effects
18.
Int J Mol Med ; 4(1): 57-9, 1999 Jul.
Article in English | MEDLINE | ID: mdl-10373638

ABSTRACT

The sensitivity of the vector plasmid pKmK8 DNA to neon ion beams was studied under dry conditions. This plasmid contains the cloning vector pJKKmf(-) and a 3.6 kbp segment encoding the Escherichia coli crp gene that can be used in mutagenesis analysis. The survival curve of the plasmid indicated an exponential profile and a D10 value of about 16 kGy in the E. coli wild-type strain for DNA repair capability. This was similar to the D10 value for the shuttle vector plasmid pZ189 DNA. Therefore, it was assumed that the excision repair system in E. coli was not effective for repairing DNA lesions induced by irradiation with heavy ion beams.


Subject(s)
Escherichia coli/genetics , Escherichia coli/radiation effects , Plasmids/genetics , Transformation, Genetic/radiation effects , DNA Damage , DNA Repair/radiation effects , Dose-Response Relationship, Radiation , Genes, Bacterial , Neon
19.
Genetika ; 33(2): 205-10, 1997 Feb.
Article in Russian | MEDLINE | ID: mdl-9162698

ABSTRACT

Embryonic sensitivity to the lethal effect of gamma-irradiation was compared in a radiosensitive mutant strain rad201G1 and a control radioresistant strain of Drosophila during the first 9 h of embryonic development. Embryonic radiosensitivity was analyzed with regard to the physiological age of embryos at the time of exposure to radiation. In the wild-type embryos, age-dependent variations of radiosensitivity were shown to be closely associated with genetically determined alterations in mitotic cycle structure, synchronism, and duration of separate phases. The rad201 gene mutation, which disrupts repair of chromosome damage in female germ cells and somatic cells of Drosophila, is expressed selectively during the period studied. The mutation had no effect on lethality at the stages of cleavage division, which represent alternations of S and M phases of the cell cycle. However, it caused an increase in lethality at the stage of postblastodermal mitotic divisions, whose onset is associated with a transformation of the organization and functions of genetic material and the appearance of G2 in the cell cycle. This transformation seems to be required for the functioning of the repair system affected by rad201.


Subject(s)
Drosophila/genetics , Gene Expression Regulation, Developmental/radiation effects , Genes, Insect , Radiation Tolerance/genetics , Animals , Cell Division/genetics , Cell Division/radiation effects , Drosophila/embryology , Drosophila/radiation effects , Embryo, Nonmammalian/physiology , Embryo, Nonmammalian/radiation effects , Female , Gamma Rays , Genotype , Lethal Dose 50 , Mitosis/genetics , Mitosis/radiation effects , Mutation , Transformation, Genetic/radiation effects
20.
Radiat Oncol Investig ; 5(3): 139-43, 1997.
Article in English | MEDLINE | ID: mdl-9303072

ABSTRACT

It has proved difficult to develop suitable models to study radiation-induced carcinogenesis by using human epithelial cells. However, immortalised human epithelial cell lines have proved useful. Unirradiated cells from the human keratinocyte cell line (HPV-G) and the human embryonic lung cell line (L132) were found to be tumourigenic in T-cell-deficient mice; thus, they are not suitable for transformation studies. Human urothelial cell lines (SV-HUC-1, NT11, BC16) and the human thyroid epithelial cell line (HTori-3) were nontumourigenic. The urothelial cell lines were refractory to radiation-induced carcinogenesis, and only one small tumour was observed in 57 mice that received irradiated cells. Whereas tumours were not produced following irradiation of these urothelial cells, changes in anchorage-independent growth were observed after a single dose of 8 Gy gamma-irradiation but not after 2 or 4 Gy. Irradiation of the human thyroid epithelial cell line (HTori-3) in vitro resulted in tumour formation. Passaging of the cells in vitro before injection did not seem to be critical. Some of the cell lines derived from the primary thyroid tumours exhibited p53 mutations in exons 5, 6, 7, and 8, as detected by single-stranded conformational polymorphism (SSCP) analysis. Thus, the human thyroid epithelial cell line (HTori-3) looks promising as a model for investigating the molecular events in radiation-induced carcinogenesis.


Subject(s)
Neoplasms, Radiation-Induced/etiology , Thyroid Gland/radiation effects , Urothelium/radiation effects , Animals , Cell Line , Cell Transplantation , Cells, Cultured , Dose-Response Relationship, Radiation , Epithelial Cells , Epithelium/radiation effects , Exons/genetics , Gamma Rays , Genes, p53/genetics , Humans , Keratinocytes/cytology , Keratinocytes/radiation effects , Lung/cytology , Lung/embryology , Lung/radiation effects , Mice , Mice, Nude , Mutation/genetics , Polymerase Chain Reaction , Polymorphism, Single-Stranded Conformational , Radiation Dosage , Thyroid Gland/cytology , Transformation, Genetic/radiation effects , Urothelium/cytology
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