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1.
BMC Ophthalmol ; 20(1): 28, 2020 Jan 15.
Article in English | MEDLINE | ID: mdl-31941474

ABSTRACT

BACKGROUND: Corneal infections with antibiotic-resistant microorganisms are an increasingly difficult management challenge and chemically or photochemically cross-linking the cornea for therapy presents a unique approach to managing such infections since both direct microbial pathogens killing and matrix stabilization can occur simultaneously. The present study was undertaken in order to compare the anti-microbial efficacy, in vitro, of 5 candidate cross-linking solutions against 5 different microbial pathogens with relevance to infectious keratitis. METHODS: In vitro bactericidal efficacy studies were carried out using 5 different FARs [diazolidinyl urea (DAU), 1,3-bis(hydroxymethyl)-5,5-dimethylimidazolidine-2,4-dione (DMDM), sodium hydroxymethylglycinate (SMG), 2-(hydroxymethyl)-2-nitro-1,3-propanediol (NT = nitrotriol), 2-nitro-1-propanol (NP)] against 5 different microbial pathogens including two antibiotic-resistant species [methicillin-sensitive Staphylococcus aureus (MSSA), methicillin-resistant Staphylococcus aureus (MRSA), vancomycin-resistant Enterococcus (VRE), Pseudomonas aeruginosa (PA), and Candida albicans (CA)]. Standard in vitro antimicrobial testing methods were used. RESULTS: The results for MSSA were similar to those for MRSA. DAU, DMDM, and SMG all showed effectiveness with greater effects generally observed with longer incubation times and higher concentrations. Against MRSA, 40 mM SMG at 120 min showed a > 95% kill rate, p < 0.02. Against VRE, 40 mM DAU for 120 min showed a > 94% kill rate, p < 0.001. All FARs showed bactericidal effect against Pseudomonas aeruginosa, making PA the most susceptible of the strains tested. Candida showed relative resistance to these compounds, requiring high concentrations (100 mM) to achieve kill rates greater than 50%. CONCLUSION: Our results show that each FAR compound has different effects against different cultures. Our antimicrobial armamentarium could potentially be broadened by DAU, DMDM, SMG and other FARs for antibiotic-resistant keratitis. Further testing in live animal models are indicated.


Subject(s)
Anti-Bacterial Agents/pharmacology , Antifungal Agents/pharmacology , Bacteria/drug effects , Candida albicans/drug effects , Formaldehyde/metabolism , Corneal Ulcer/drug therapy , Corneal Ulcer/microbiology , Drug Resistance , Drug Resistance, Bacterial , Eye Infections, Bacterial/drug therapy , Eye Infections, Bacterial/microbiology , Eye Infections, Fungal/drug therapy , Eye Infections, Fungal/microbiology , Microbial Sensitivity Tests , Nitro Compounds/pharmacology , Propanols/pharmacology , Sarcosine/analogs & derivatives , Sarcosine/pharmacology , Tromethamine/analogs & derivatives , Tromethamine/pharmacology , Urea/analogs & derivatives , Urea/pharmacology
2.
J Pharm Biomed Anal ; 171: 1-7, 2019 Jul 15.
Article in English | MEDLINE | ID: mdl-30953797

ABSTRACT

Secreted recombinant activated clotting factor VII activated (rFVIIa) in cell culture media missing gamma-carboxyglutamic acid (Gla) domain as a result of failure in gamma-carboxylation or cell lysis is called Gla-domainless impurity which has less negative charge compared to native rFVIIa. Based on risk assessment, this type of impurity is considered as critical drug product quality attribute of rFVIIa and its quantitative analysis in product batches is a critical issue in quality control laboratories. Analysis of Gla-domainless impurity is accomplished by Strong Anion Exchange Chromatography (SAX) in recombinant factor VIIa using Tris and Bis-Tris propane salt buffers as equilibrating buffers and high concentration ammonium acetate as an eluent. Appearance of ghost peaks with notable intensity during elution time of Gla-domainless impurity caused distortion of the related peak and interference with robust and accurate quantification of this impurity. Subsequently, the ghost peak was analyzed by LC-ESI-MS to determine the structure which showed the m/z values at 905.27, 623.53 and 341.60 and 563.73. To find the source of these ghost peaks, quality of water, buffer salts and Chelex-100 together with ionic strength of mobile phase A (addition of 25 mM NaCl) were considered as affecting parameters and several experiments designed with DOE software to optimize the best condition of highest quality the method with lowest signal of ghost peak noises. By interpretation of DOE result, it is concluded that high grade water and buffer salt along with high quality Chelex-100 resins are important factors to achieve a method with lowest ghost peaks. However, addition of 25 mM NaCl to mobile phase A with either lower quality buffer salts or lower water grade yields high quality chromatogram peak with acceptable ghost peaks. LC/MS analysis indicates that macrostructures of Bis-Tris propane made up as a result of hydrogen bonds with each other or Tris molecules can be the source of ghost peaks.


Subject(s)
1-Carboxyglutamic Acid/analysis , Chromatography, Ion Exchange/standards , Drug Contamination , Factor VIIa/standards , Spectrometry, Mass, Electrospray Ionization/standards , Tromethamine/analogs & derivatives , Buffers , Chemistry, Pharmaceutical , Recombinant Proteins/standards , Tromethamine/chemistry
3.
Biochim Biophys Acta Proteins Proteom ; 1867(4): 359-366, 2019 04.
Article in English | MEDLINE | ID: mdl-30639425

ABSTRACT

BACKGROUND: Characterizing the thermodynamic parameters behind metal-biomolecule interactions is fundamental to understanding the roles metal ions play in biology. Isothermal Titration Calorimetry (ITC) is a "gold-standard" for obtaining these data. However, in addition to metal-protein binding, additional equilibria such as metal-buffer interactions must be taken into consideration prior to making meaningful comparisons between metal-binding systems. METHODS: In this study, the thermodynamics of Ca2+ binding to three buffers (Bis-Tris, MES, and MOPS) were obtained from Ca2+-EDTA titrations using ITC. These data were used to extract buffer-independent parameters for Ca2+ binding to human cardiac troponin C (hcTnC), an EF-hand containing protein required for heart muscle contraction. RESULTS: The number of protons released upon Ca2+ binding to the C- and N-domain of hcTnC were found to be 1.1 and 1.2, respectively. These values permitted determination of buffer-independent thermodynamic parameters of Ca2+-hcTnC binding, and the extracted data agreed well among the buffers tested. Both buffer and pH-adjusted parameters were determined for Ca2+ binding to the N-domain of hcTnC and revealed that Ca2+ binding under aqueous conditions and physiological ionic strength is both thermodynamically favorable and driven by entropy. CONCLUSIONS: Taken together, the consistency of these data between buffer systems and the similarity between theoretical and experimental proton release is indicative of the reliability of the method used and the importance of extracting metal-buffer interactions in these studies. GENERAL SIGNIFICANCE: The experimental approach described herein is clearly applicable to other metal ions and other EF-hand protein systems.


Subject(s)
Calcium/chemistry , Troponin C/chemistry , Alkanesulfonic Acids/chemistry , Buffers , Edetic Acid/chemistry , Heart , Humans , Hydrogen-Ion Concentration , Morpholines/chemistry , Thermodynamics , Tromethamine/analogs & derivatives , Tromethamine/chemistry
4.
Int J Biol Macromol ; 112: 720-727, 2018 Jun.
Article in English | MEDLINE | ID: mdl-29425867

ABSTRACT

To explore the mechanism of lysozyme stabilization in buffer system, we have investigated the interactions between lysozyme and the biological buffers (TRIS, TAPS, and TES) using spectroscopic techniques, including ultraviolet-visible (UV-Vis), fluorescence, thermal fluorescence, dynamic light scattering (DLS), Fourier transform infrared spectroscopy (FTIR) and circular dichroism (CD) spectroscopy. From the series of spectroscopic studies, it is found that the native structure of the protein remains intact in the different concentrations (0.05, 0.1, 0.25, 0.5, and 1.0M) of the biological buffer aqueous solutions at pH7.0. Moreover, all these three investigated buffers are able to protect lysozyme against thermal denaturation, particularly in high concentration (1.0M) of the buffer aqueous solutions.


Subject(s)
Muramidase/metabolism , Sulfonic Acids/pharmacology , Tromethamine/analogs & derivatives , Tromethamine/pharmacology , Animals , Buffers , Chickens , Circular Dichroism , Dynamic Light Scattering , Enzyme Stability/drug effects , Hydrodynamics , Hydrogen-Ion Concentration , Protein Structure, Secondary , Protein Structure, Tertiary , Spectrometry, Fluorescence , Spectrophotometry, Ultraviolet , Spectroscopy, Fourier Transform Infrared , Transition Temperature
5.
J Photochem Photobiol B ; 164: 30-35, 2016 Nov.
Article in English | MEDLINE | ID: mdl-27639122

ABSTRACT

2-[Tris(oleoyloxymethyl)methylamino]-1-ethane sulfonic acid (TES trioleate) is an inhibitor of phospholipase A2 (PLA2), which hydrolyzes cell membrane phospholipids to produce arachidonic acid (AA) and lysophospholipids (LysoPLs). Here, we investigated the protective effects of TES trioleate on cell damage caused by ultraviolet A (UVA) light and reactive oxygen species (ROS). Pre-incubation with 250-1000µM TES trioleate resulted in concentration-dependent protection from UVA-induced damage in HaCaT cells. Additionally, 25-1000µM TES trioleate provided protection against H2O2 in a concentration-dependent manner. In human erythrocytes treated with 1O2, 10-100µM TES trioleate showed concentration-dependent protective effects, similar to but stronger than the controls, 4-BPB and lipophilic antioxidant (+)-α-tocopherol at 100µM. TES trioleate did not have detectable radical scavenging activity. Moreover, compared with (+)-α-tocopherol and rutin, TES trioleate showed low ROS scavenging activity. Thus, although TES trioleate showed cell protective effects against UVA, H2O2, and 1O2-induced damages, these effects were not caused by the scavenging ability of the radical or ROS. Finally, pretreatment of HaCaT cells and human erythrocytes with l-α-lysophosphatidylcholine produced by PLA2 promoted increased cell damage at low concentrations. Thus, the protective effects of TES trioleate on cellular damage by UVA and ROS may be associated with inhibition of PLA2-dependent cell damage rather than ROS scavenging.


Subject(s)
Phospholipase A2 Inhibitors/pharmacology , Phospholipases A2/drug effects , Reactive Oxygen Species/metabolism , Tromethamine/analogs & derivatives , Ultraviolet Rays , Cell Line , Humans , Tromethamine/pharmacology
6.
Vet Dermatol ; 27(5): 391-e98, 2016 Oct.
Article in English | MEDLINE | ID: mdl-27545352

ABSTRACT

BACKGROUND: Pseudomonas aeruginosa (PA) may cause suppurative otitis externa with severe inflammation and ulceration in dogs. Multidrug resistance is commonly reported for this organism, creating a difficult therapeutic challenge. OBJECTIVE: The aim of this study was to evaluate the in vitro antimicrobial activity of a gel containing 0.5 µg/mL of antimicrobial peptide AMP2041, 0.07% chlorhexidine digluconate (CLX), 0.4% Tris and 0.1% EDTA on 30 clinical isolates of PA from canine otitis externa. MATERIALS AND METHODS: Antimicrobial activity was evaluated through minimal bactericidal concentration (MBC). Standardized bacterial suspensions were incubated with different concentrations of the gel at 37°C for 30 min and plated for colony forming unit (CFU) counts. Time-to-kill kinetics were evaluated with the undiluted product and at MBC for each PA strain at 30 s, 1, 5, 10, 15, 30 min, 24 and 48 h. RESULTS: The MBC was 1:64 for two of 30 strains, 1:128 for 15 of 30 strains and 1:256 for 13 of 30 strains. The geometric mean was 1:165, equivalent to a concentration of 0.003 µg/mL AMP2041 + 0.0004% CLX + 0.0024%Tris + 0.0006% EDTA. Time-to-kill assays with the undiluted product showed complete bactericidal effect within 30 s for all isolates, whereas at the MBC this effect was reached within 5 min for 20 of 30 isolates and within 30 min for all isolates. Bactericidal activity was maintained after 48 h for all isolates. CONCLUSION: This gel has shown rapid, complete and long-lasting activity against a panel of 30 PA isolates from cases of canine otitis externa.


Subject(s)
Anti-Bacterial Agents/therapeutic use , Antimicrobial Cationic Peptides/therapeutic use , Chlorhexidine/analogs & derivatives , Dog Diseases/microbiology , Edetic Acid/analogs & derivatives , Edetic Acid/pharmacology , Otitis Externa/veterinary , Pseudomonas aeruginosa/drug effects , Tromethamine/analogs & derivatives , Tromethamine/pharmacology , Animals , Chlorhexidine/administration & dosage , Chlorhexidine/therapeutic use , Dogs , Gels , Otitis Externa/microbiology
7.
Vet Dermatol ; 27(5): 340-e84, 2016 Oct.
Article in English | MEDLINE | ID: mdl-27406860

ABSTRACT

BACKGROUND: Topical therapy is an important alternative to systemic antibacterial therapy for treatment of canine superficial pyoderma in light of the emergence of multidrug-resistant staphylococci. Chlorhexidine is widely used in shampoo products alone or in combination with miconazole or tromethamine-ethylenediaminetetraacetic acid (trisEDTA). Comparisons of these combinations have not been made. HYPOTHESIS/OBJECTIVES: To determine minimum inhibitory concentrations (MICs) of combinations of chlorhexidine/miconazole and chlorhexidine/trisEDTA in vitro in a collection of Staphylococcus pseudintermedius (SP) from northern (NUK) and southeastern (SEUK) United Kingdom (UK) sources. METHODS: MICs of chlorhexidine, miconazole, trisEDTA and combinations of chlorhexidine/miconazole (1:1) or chlorhexidine/trisEDTA (80:16:1 and 80:5:1) were determined for 196 canine SP isolates from NUK [49 meticillin-resistant (MRSP), 50 meticillin-susceptible (MSSP)] and fom SEUK (48 MRSP, 49 MSSP) using agar dilution. RESULTS: TrisEDTA alone did not inhibit growth. Chlorhexidine/miconazole MICs (median = 0.5 mg/L) were lower than those of either drug alone (P < 0.05) and lower than chlorhexidine/trisEDTA MICs (median = 1 mg/L; P < 0.0005) in each bacterial type and from both regions, except for miconazole in NUK MSSP. An additive interaction was noted between chlorhexidine and miconazole or trisEDTA (80:16:1 ratio) in 79 and 43 isolates, respectively, whereas antagonism between chlorhexidine and trisEDTA was noted for three isolates. NUK isolates were more susceptible than SEUK isolates (P < 0.05), except MRSP exposed to chlorhexidine and the chlorhexidine/trisEDTA (80:16:1) combination. CONCLUSIONS AND CLINICAL IMPORTANCE: These low MICs are likely to be exceeded by topical therapy. Evaluation of the mechanisms by which chlorhexidine combinations interact to reduce MICs is warranted, in view of increasing concerns of biocide tolerance in staphylococci.


Subject(s)
Chlorhexidine/pharmacology , Dog Diseases/microbiology , Edetic Acid/analogs & derivatives , Edetic Acid/pharmacology , Miconazole/pharmacology , Staphylococcal Skin Infections/veterinary , Tromethamine/analogs & derivatives , Tromethamine/pharmacology , Animals , Chlorhexidine/administration & dosage , Dog Diseases/epidemiology , Dogs , Drug Interactions , Edetic Acid/administration & dosage , Methicillin/pharmacology , Methicillin Resistance , Miconazole/administration & dosage , Microbial Sensitivity Tests , Staphylococcal Skin Infections/epidemiology , Staphylococcal Skin Infections/microbiology , Staphylococcus/classification , Staphylococcus/drug effects , Tromethamine/administration & dosage , United Kingdom/epidemiology
8.
Analyst ; 140(21): 7142-5, 2015 Nov 07.
Article in English | MEDLINE | ID: mdl-26347905

ABSTRACT

A series of aliphatic tertiary amines (HEPES, POPSO, EPPS and BIS-TRIS) commonly used to buffer the pH in biological experiments, were examined as alternative, non-toxic co-reactants for the electrogenerated chemiluminescence (ECL) of tris(2,2'-bipyridine)ruthenium(ii) ([Ru(bpy)3](2+)). These were found to be very attractive as "multi-tasking" reagents, serving not only as co-reactants, but also fulfiling the roles of pH buffer and supporting electrolyte within an aqueous environment; thus significantly simplifying the overall ECL analysis. Sub-nanomolar detection limits were obtained for [Ru(bpy)3](2+) in the presence of BIS-TRIS, making this species an valuable option for co-reactant ECL-based bioanalytical applications.


Subject(s)
Electrochemistry/methods , Electrolytes/chemistry , Luminescence , Ruthenium/chemistry , 2,2'-Dipyridyl/chemistry , Amines , Buffers , Chemistry Techniques, Analytical , Electrodes , HEPES/chemistry , Hydrogen-Ion Concentration , Indicators and Reagents , Luminescent Measurements , Models, Chemical , Phosphatidylserines/chemistry , Piperazines/chemistry , Solubility , Sulfonic Acids/chemistry , Tromethamine/analogs & derivatives , Tromethamine/chemistry
9.
Chembiochem ; 16(10): 1474-82, 2015 Jul 06.
Article in English | MEDLINE | ID: mdl-25955220

ABSTRACT

With the goal of designing a lysosomal phospholipase mimic, we optimized experimental variables to enhance Ce(IV) -assisted hydrolysis of phosphatidylcholine (PC) liposomes. Our best result was obtained with the chelating agent bis-tris propane (BTP). Similar to the hydrolytic enzyme, Ce(IV) -assisted hydrolysis of PC phosphate ester bonds was higher at lysosomal pH (∼4.8) compared to pH 7.2. In the presence of BTP, the average cleavage yield at ∼pH 4.8 and 37 °C was: 67±1 %, 5.7-fold higher than at ∼pH 7.2 and roughly equivalent to the percent of phospholipid found on the metal-accessible exo leaflet of small liposomes. No Ce(IV) precipitation was observed. When BTP was absent, there was significant turbidity, and the amount of cleavage at ∼pH 4.8 (69±1 %) was 2.1-fold higher than the yield obtained at ∼pH 7.2. Our results show that BTP generates homogenous solutions of Ce(IV) that hydrolyze phosphatidylcholine with enhanced selectivity for lysosomal pH.


Subject(s)
Cerium/chemistry , Liposomes/chemistry , Phosphatidylcholines/chemistry , Tromethamine/analogs & derivatives , Hydrogen-Ion Concentration , Hydrolysis , Lysosomes/chemistry , Tromethamine/chemistry
10.
Eur J Med Res ; 19: 66, 2014 Dec 11.
Article in English | MEDLINE | ID: mdl-25498217

ABSTRACT

BACKGROUND: Gliomas are the most common human brain tumors. Glioblastoma, also known as glioblastoma multiform (GBM), is the most aggressive, malignant, and lethal glioma. The investigation of prognostic and diagnostic molecular biomarkers in glioma patients to provide direction on clinical practice is urgent. Recent studies demonstrated that abnormal DNA methylation states play a key role in the pathogenesis of this kind of tumor. In this study, we want to identify a novel biomarker related to glioma initiation and find the role of the glioma-related gene. METHODS: We performed a methylation-specific microarray on the promoter region to identify methylation gene(s) that may affect outcome of GBM patients. Normal and GBM tissues were collected from Tiantan Hospital. Genomic DNA was extracted from these tissues and analyzed with a DNA promoter methylation microarray. Testis derived transcript (TES) protein expression was analyzed by immunohistochemistry in paraffin-embedded patient tissues. Western blotting was used to detect TES protein expression in the GBM cell line U251 with or without 5-aza-dC treatment. Cell apoptosis was evaluated by flow cytometry analysis using Annexin V/PI staining. RESULTS: We found that the TES promoter was hypermethylated in GBM compared to normal brain tissues under DNA promoter methylation microarray analysis. The GBM patients with TES hypermethylation had a short overall survival (P <0.05, log-rank test). Among GBM samples, reduced TES protein level was detected in 33 (89.2%) of 37 tumor tissues by immunohistochemical staining. Down regulation of TES was also correlated with worse patient outcome (P <0.05, log-rank test). Treatment on the GBM cell line U251 with 5-aza-dC can greatly increase TES expression, confirming the hypermethylation of TES promoter in GBM. Up-regulation of TES prompts U251 apoptosis significantly. This study demonstrated that both TES promoter hypermethylation and down-regulated protein expression significantly correlated with worse patient outcome. Treatment on the GBM cell line (U251) with 5-aza-dC can highly release TES expression resulting in significant apoptosis in these cells. CONCLUSIONS: Our findings suggest that the TES gene is a novel tumor suppressor gene and might represent a valuable prognostic marker for glioblastoma, indicating a potential target for future GBM therapy.


Subject(s)
Apoptosis/physiology , Brain Neoplasms/metabolism , Brain/metabolism , DNA Methylation , Gene Expression Regulation, Neoplastic/physiology , Glioblastoma/metabolism , Tromethamine/analogs & derivatives , Brain Neoplasms/pathology , Cell Line, Tumor , DNA Methylation/physiology , Down-Regulation , Humans , Immunohistochemistry/methods , Tromethamine/metabolism
11.
Can J Microbiol ; 60(3): 113-20, 2014 Mar.
Article in English | MEDLINE | ID: mdl-24588384

ABSTRACT

Antimicrobial peptides (AMPs) are part of the innate immune system of complex multicellular organisms. Despite the fact that AMPs show great potential as a novel class of antibiotics, the lack of a cost-effective means for their mass production limits both basic research and clinical use. In this work, we describe a novel expression system for the production of antimicrobial peptides in Escherichia coli by combining ΔI-CM mini-intein with the self-assembling amphipathic peptide 18A to drive the formation of active aggregates. Two AMPs, human ß-defensin 2 and LL-37, were fused to the self-cleaving tag and expressed as active protein aggregates. The active aggregates were recovered by centrifugation and the intact antimicrobial peptides were released into solution by an intein-mediated cleavage reaction in cleaving buffer (phosphate-buffered saline supplemented with 40 mmol/L Bis-Tris, 2 mmol/L EDTA, pH 6.2). The peptides were further purified by cation-exchange chromatography. Peptides yields of 0.82 ± 0.24 and 0.59 ± 0.11 mg/L were achieved for human ß-defensin 2 and LL-37, respectively, with demonstrated antimicrobial activity. Using our expression system, intact antimicrobial peptides were recovered by simple centrifugation from active protein aggregates after the intein-mediated cleavage reaction. Thus, we provide an economical and efficient way to produce intact antimicrobial peptides in E. coli.


Subject(s)
Anti-Infective Agents/metabolism , Antimicrobial Cationic Peptides/metabolism , Escherichia coli/metabolism , Amino Acid Sequence , Anti-Infective Agents/chemistry , Antimicrobial Cationic Peptides/chemistry , Antimicrobial Cationic Peptides/genetics , Antimicrobial Cationic Peptides/pharmacology , Candida albicans/drug effects , Escherichia coli/chemistry , Escherichia coli/genetics , Escherichia coli K12/drug effects , Gene Expression Regulation, Bacterial , Humans , Inteins , Peptides/chemistry , Peptides/genetics , Peptides/metabolism , Recombinant Proteins/chemistry , Recombinant Proteins/genetics , Recombinant Proteins/metabolism , Tromethamine/analogs & derivatives , beta-Defensins/chemistry , beta-Defensins/genetics , beta-Defensins/metabolism , beta-Defensins/pharmacology , Cathelicidins
12.
J Proteome Res ; 12(12): 5587-97, 2013 Dec 06.
Article in English | MEDLINE | ID: mdl-24245541

ABSTRACT

Metal oxide affinity chromatography (MOAC) represented by titanium dioxide (TiO2) chromatography has been used for phosphopeptide enrichment from cell lysate digests prior to mass spectrometry. For in-depth phosphoproteomic analysis, it is important for MOAC to achieve high phosphopeptide enrichment efficiency by optimizing purification conditions. However, there are some differences in phosphopeptide selectivity and specificity enriched by various TiO2 materials and procedures. Here, we report that binding/wash buffers containing polyhydric alcohols, such as glycerol, markedly improve phosphopeptide selectivity from complex peptide mixtures. In addition, the elution conditions combined with secondary amines, such as bis-Tris propane, made it possible to recover phosphopeptides with highly hydrophobic properties and/or longer peptide lengths. To assess the practical applicability of our improved method, we confirmed using PC3 prostate cancer cells. By combining the hydrophilic interaction chromatography (HILIC) with the optimized TiO2 enrichment method prior to LC-MS/MS analysis, over 8300 phosphorylation sites and 2600 phosphoproteins were identified. Additionally, some dephosphorylations of those were identified by treatment with dasatinib for a kinase inhibitor. These results indicate that our method is applicable to understanding the profiling of kinase inhibitors such as anticancer compounds, which will be useful for drug discovery and development.


Subject(s)
Glycerol/chemistry , Phosphopeptides/analysis , Phosphoproteins/analysis , Titanium/chemistry , Amino Acid Sequence , Cell Line, Tumor , Chromatography, Affinity , Dasatinib , Drug Discovery , Humans , Male , Molecular Sequence Data , Protein Kinase Inhibitors/pharmacology , Proteolysis , Proteomics , Pyrimidines/pharmacology , Thiazoles/pharmacology , Tromethamine/analogs & derivatives
13.
Macromol Biosci ; 13(11): 1478-84, 2013 Nov.
Article in English | MEDLINE | ID: mdl-23894114

ABSTRACT

A versatile method of dual chemical functionalization of graphene oxide (GO) with Tris-[nitrilotris(acetic acid)] (Tris-NTA) and biotin for cellular delivery of oligohistidine- and biotin-tagged biomolecules is reported. Orthogonally functionalized GO surfaces with Tris-NTA and biotin to obtain a dual-functionalized GO (DFGO) are prepared and characterized by various spectroscopic and microscopic techniques. Fluorescence microscopic images reveal that DFGO surfaces are capable of binding oligohistidine-tagged biomolecules/proteins and avidin/biotin-tagged biomolecules/proteins orthogonally. The DFGO nanoparticles are non-cytotoxic in nature and can deliver oligohistidine- and biotin-tagged biomolecules simultaneously into the cell.


Subject(s)
Biotin/chemistry , Drug Carriers/chemical synthesis , Graphite/chemistry , Histidine/chemistry , Nanoparticles/chemistry , Oligopeptides/chemistry , Avidin/chemistry , Cell Line, Tumor , Drug Carriers/pharmacology , Epithelial Cells/cytology , Epithelial Cells/drug effects , Epithelial Cells/metabolism , Fluorescent Dyes , Genes, Reporter , Green Fluorescent Proteins/metabolism , Histidine/metabolism , Humans , Microscopy, Atomic Force , Microscopy, Fluorescence , Nitrilotriacetic Acid/chemistry , Oligopeptides/metabolism , Oxides , Spectroscopy, Fourier Transform Infrared , Staining and Labeling/methods , Tromethamine/analogs & derivatives , Tromethamine/chemistry
14.
Poult Sci ; 92(4): 874-81, 2013 Apr.
Article in English | MEDLINE | ID: mdl-23472009

ABSTRACT

A hypothesis was tested that the in ovo injection of biological buffers may reinforce the buffering capacity of albumen, thereby withstanding the increase in albumen pH during storage and improving hatchability and chick quality in long-term stored eggs. Hatching eggs (n = 2,420) were randomly assigned to 11 treatment groups (4 replicates of 55 eggs each) and injected (d 1) with distilled water, 25 or 50 mM HEPES (H25 and H50), Bicine (B25 and B50), Tris (T25 and T50), and Bis-Tris-propane (BTP25 and BTP50) solutions or were not injected (intact: control; or pricked with a needle: N). The eggs were then stored for 14 d during which the egg internal characteristics were evaluated at 1, 2, 3, 4, 5, 8, and 13 d of storage (n = 924 in total) and the remaining eggs (n = 1,496) were incubated. A decrease in albumen pH was found for H25, H50, B50, and BTP25 groups from 2 through 5 d postinjection. Eggs receiving H25, H50, and B50 recorded a higher albumen index (at 13 d of storage) and Haugh unit (between 8 and 13 d of storage) compared with the control. Interestingly, the hatchability of fertile eggs was influenced by the treatment effect (P = 0.0001) where the eggs receiving H25 (88.3%), H50 (88.9%), B50 (88.4%), and BTP25 (87.6%) recorded higher values than that of control (82.1%), associated with a decreased early embryonic mortality rate (P < 0.0001). In ovo injection of Tris buffer, however, profoundly decreased the hatchability (47.2 and 29.0% for T25 and T50, respectively) and percentage of first-grade chicks (67.5 and 63.6% for T25 and T50, respectively) compared with the control (90.1%). In conclusion, prestorage in ovo injection of H25, H50, B50, and BTP25 improved hatchability in long-term stored eggs in which a decreased albumen pH during the d 2 through 5 of storage period might be involved.


Subject(s)
Animal Husbandry/methods , Chickens/physiology , Glycine/analogs & derivatives , HEPES/administration & dosage , Ovum/physiology , Tromethamine/administration & dosage , Animals , Buffers , Chick Embryo/physiology , Glycine/administration & dosage , Hydrogen-Ion Concentration , Random Allocation , Tromethamine/analogs & derivatives
15.
Acta Crystallogr Sect F Struct Biol Cryst Commun ; 68(Pt 12): 1560-3, 2012 Dec 01.
Article in English | MEDLINE | ID: mdl-23192048

ABSTRACT

Mevalonate kinase (MVK), which plays an important role in catalysing the biosynthesis of isoprenoid compounds derived from the mevalonate pathway, transforms mevalonate to 5-phosphomevalonate using ATP as a cofactor. Mevalonate kinase from Methanosarcina mazei (MmMVK) was expressed in Escherichia coli, purified and crystallized for structural analysis. Diffraction-quality crystals of MmMVK were obtained by the vapour-diffusion method using 0.32 M MgCl2, 0.08 M bis-tris pH 5.5, 16%(w/v) PEG 3350. The crystals belonged to space group P2(1)2(1)2, with unit-cell parameters a=97.11, b=135.92, c=46.03 Å. Diffraction data were collected to 2.08 Šresolution.


Subject(s)
Methanosarcina/enzymology , Phosphotransferases (Alcohol Group Acceptor)/chemistry , Adenosine Triphosphate/metabolism , Catalysis , Crystallography, X-Ray , Escherichia coli/genetics , Escherichia coli/metabolism , Phosphotransferases (Alcohol Group Acceptor)/metabolism , Tromethamine/analogs & derivatives , X-Ray Diffraction
16.
J Pharm Biomed Anal ; 70: 280-7, 2012 Nov.
Article in English | MEDLINE | ID: mdl-22877875

ABSTRACT

Tris(hydroxymethyl) aminomethane (tris) salt of API ramipril was synthesized, and characterized by FTIR, TG-DSC and ab initio X-ray powder structure analysis. The compound, ramipril-tris (II), crystallizes in the monoclinic space group P2(1) with a=24.3341(15), b=6.4645(5), c=9.5357(7) Å, ß=96.917(3)° and V=1489.1(3) Å(3). The crystal structure has been determined from laboratory X-ray powder diffraction data using direct space global optimization strategy (simulated annealing) followed by the Rietveld refinement. A network of intermolecular OH…O, CH…N and CH…O hydrogen bonds between the ramipril-ramipril, tris-tris and ramipril-tris components in the compound generates a two-dimensional molecular assembly in (110) plane. A comparative study of solid-state stabilities of ramipril-tris (II) with that of ramipril (I) and ramipril-erbumine (III) indicates that ramipril-tris (II) is the most stable one among the three, and the conversion to impurity D after 72 h at 80 °C is only 1.5%. The solution phase analysis at different pH values also reveals a greater stability of ramipril-tris (II) over ramipril (I).


Subject(s)
Angiotensin-Converting Enzyme Inhibitors/chemical synthesis , Crystallography, X-Ray , Powder Diffraction , Ramipril/chemical synthesis , Technology, Pharmaceutical/methods , Tromethamine/chemical synthesis , Calorimetry, Differential Scanning , Chemistry, Pharmaceutical , Chromatography, High Pressure Liquid , Crystallization , Drug Stability , Hot Temperature , Hydrogen Bonding , Hydrogen-Ion Concentration , Models, Molecular , Molecular Structure , Ramipril/analogs & derivatives , Spectroscopy, Fourier Transform Infrared , Time Factors , Tromethamine/analogs & derivatives
17.
J Mol Biol ; 423(4): 503-14, 2012 Nov 02.
Article in English | MEDLINE | ID: mdl-22922065

ABSTRACT

Pseudomonas aeruginosa is an opportunistic Gram-negative pathogen. It colonizes different tissues by the utilization of diverse mechanisms. One of these may involve the breakdown of the host cell membrane through the sequential action of hemolytic phospholipase C and phosphorylcholine phosphatase (PchP). The action of hemolytic phospholipase C on phosphatidylcholine produces phosphorylcholine, which is hydrolyzed to choline (Cho) and inorganic phosphate by PchP. The available biochemical data on this enzyme demonstrate the involvement of two Cho-binding sites in the catalytic cycle and in enzyme regulation. The crystal structure of P. aeruginosa PchP has been determined. It folds into three structural domains. The first domain harbors all the residues involved in catalysis and is well conserved among the haloacid dehalogenase superfamily of proteins. The second domain is characteristic of PchP and is involved in the recognition of the Cho moiety of the substrate. The third domain stabilizes the relative position of the other two. Fortuitously, the crystal structure of PchP captures molecules of Bistris (2-[bis(2-hydroxyethyl)amino]-2-(hydroxymethyl)propane-1,3-diol) at the active site and at an additional site. This represents two catalytically relevant complexes with just one or two inhibitory Bistris molecules and provides the basis of the PchP function and regulation. Site-directed mutagenesis along with biochemical experiments corroborates the structural observations and demonstrates the interplay between different sites for Cho recognition and inhibition. The structural comparison of PchP with other phosphatases of the haloacid dehalogenase family provides a three-dimensional picture of the conserved catalytic cycle and the structural basis for the recognition of the diverse substrate molecules.


Subject(s)
Choline/metabolism , Hydrolases/chemistry , Hydrolases/metabolism , Pseudomonas aeruginosa/enzymology , Binding Sites , Biocatalysis , Catalytic Domain , Crystallography, X-Ray , Models, Molecular , Mutagenesis, Site-Directed , Phosphorylcholine/chemistry , Phosphorylcholine/metabolism , Protein Folding , Protein Structure, Tertiary , Pseudomonas aeruginosa/metabolism , Tromethamine/analogs & derivatives , Tromethamine/metabolism , Type C Phospholipases/metabolism
18.
Chem Commun (Camb) ; 48(62): 7729-31, 2012 Aug 11.
Article in English | MEDLINE | ID: mdl-22739549

ABSTRACT

A rhenium tris-carbonyl derivative has been designed to couple infrared and luminescent detection in cells. Both spectroscopies are consistent with one another; they point out the reliability of the present SCoMPI (for Single Core Multimodal Probe for Imaging) for bimodal imaging and unambiguously indicate a localization at the Golgi apparatus in MDA-MB-231 breast cancer cells.


Subject(s)
Molecular Imaging/methods , Molecular Probes/chemical synthesis , Rhenium/chemistry , Tromethamine/analogs & derivatives , Cell Line, Tumor , Golgi Apparatus/ultrastructure , Humans , Luminescence , Luminescent Measurements , Reproducibility of Results , Spectroscopy, Near-Infrared
19.
J Am Chem Soc ; 134(28): 11322-5, 2012 Jul 18.
Article in English | MEDLINE | ID: mdl-22741745

ABSTRACT

Persistent infections are frequently caused by dormant and biofilm-associated bacteria, which often display characteristically slow growth. Antibiotics that require rapid cell growth may be ineffective against these organisms and thus fail to prevent reoccurring infections. In contrast to growth-based antimicrobial agents, membrane-targeting drugs effectively kill slow-growing bacteria. Herein we introduce 2-((3-(3,6-dichloro-9H-carbazol-9-yl)-2-hydroxypropyl)amino)-2-(hydroxymethyl)propane-1,3-diol (DCAP), a potent broad-spectrum antibiotic that reduces the transmembrane potential of Gram-positive and Gram-negative bacteria and causes mislocalization of essential membrane-associated proteins, including MinD and FtsA. Importantly, DCAP kills nutrient-deprived microbes and sterilizes bacterial biofilms. DCAP is lethal against bacterial cells, has no effect on red blood cell membranes, and only decreases the viability of mammalian cells after ≥6 h. We conclude that membrane-active compounds are a promising solution for treating persistent infections. DCAP expands the limited number of compounds in this class of therapeutic small molecules and provides new opportunities for the development of potent broad-spectrum antimicrobial agents.


Subject(s)
Anti-Bacterial Agents/pharmacology , Carbazoles/pharmacology , Tromethamine/analogs & derivatives , Anti-Bacterial Agents/chemistry , Carbazoles/chemistry , Molecular Structure , Tromethamine/chemistry , Tromethamine/pharmacology
20.
Microsc Res Tech ; 75(4): 520-3, 2012 Apr.
Article in English | MEDLINE | ID: mdl-22553829

ABSTRACT

This study was designed to evaluate the effect of various buffers on the fluorescence signal intensity of two fluorochromes (IP and CFDA) when used to assess the membrane integrity of ram sperm. Second ejaculates (18) from nine adult males were collected using an artificial vagina and diluted in either MOPS, TRIS, TES, HEPES, citrate, or phosphate-based extenders. Semen samples were stored at 15°C and the membrane integrity was assessed within the first 24 h of storage. Mean fluorescence intensity (FI) of PI- and CDFA-labeled sperm heads and fluorescence background noise (FBN) were determined quantitatively using Image J software. Fluorescence contrast (FC) was expressed as the difference between FI and FBN. Significantly, higher FI and FC were recorded when TRIS diluent was used, rather than the other diluents, both in the propidium- and fluorescein-labeled cells. The citrate and phosphate-based extenders showed intermediate results of FC between those of TRIS and zwitterionic (MOPS, TES and HEPES) groups for the PI-labeled sperm. However, in the CFDA-labeled sperm, the lower values of FC were obtained in the citrate and phosphate groups due to increased levels of FBN. For the membrane-damaged sperm, fluorescent labeling was limited to the sperm heads when TRIS-buffer was used, whereas in the other groups, the sperm tail was also frequently observed. It was concluded that TRIS buffer solution markedly increases the fluorescence yield of IP/CFDA-labeled sperm cells in the ram and that this should be considered when evaluating their membrane integrity.


Subject(s)
Microscopy, Fluorescence/methods , Spermatozoa/drug effects , Spermatozoa/ultrastructure , Tromethamine/pharmacology , Analysis of Variance , Animals , Buffers , Cell Membrane/drug effects , Cell Membrane/physiology , HEPES/pharmacology , Male , Morpholines/pharmacology , Sheep , Spermatozoa/cytology , Tromethamine/analogs & derivatives
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