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1.
BMC Microbiol ; 22(1): 51, 2022 02 10.
Article in English | MEDLINE | ID: mdl-35144539

ABSTRACT

BACKGROUND: The management of enteric fever through antibiotics is difficult these days due to the emerging resistance of Salmonella to various antimicrobial agents. The development of antimicrobial resistance is associated with multiple factors including mutations in the specific genes. To know the current status of mutation-mediated fluoroquinolone-resistance among Salmonella enterica serovars; Typhi, Paratyphi A, B and C, this study was focused on detecting gyrA ser83 mutation by restriction digestion analysis of gyrA gene using HinfI endonuclease. RESULTS: A total of 948 blood samples were processed for isolation of Salmonella spp. and 3.4% of them were found to be positive for Salmonella growth. Out of the 32 Salmonella isolates, 2.2% were S. Typhi and 1.2% were S. Paratyphi A. More interestingly, we observed less than 5% of isolates were resistant to first-line drugs including chloramphenicol, cotrimoxazole and ampicillin. More than 80% of isolates were resistant to fluoroquinolones accounting for 84.4% to levofloxacin followed by 87.5% to ofloxacin and 100% to ciprofloxacin by disc diffusion methods. However, the minimum inhibitory concentration method using agar dilution showed only 50% of isolates were resistant to ciprofloxacin. A total of 3.1% of isolates were multidrug-resistant. Similarly, 90.6% of the Salmonella isolates showed gyrA ser83 mutation with resistance to nalidixic acid. CONCLUSIONS: The increased resistance to fluoroquinolones and nalidixic acid in Salmonella isolates in our study suggests the use of alternative drugs as empirical treatment. Rather, the treatment should focus on prescribing first-line antibiotics since we observed less than 5% of Salmonella isolates were resistant to these drugs.


Subject(s)
Anti-Bacterial Agents/pharmacology , DNA Gyrase/genetics , Drug Resistance, Bacterial/genetics , Fluoroquinolones/pharmacology , Mutation , Salmonella enterica/drug effects , Salmonella enterica/genetics , Serogroup , Adolescent , Adult , Aged , Aged, 80 and over , Child , Child, Preschool , Cross-Sectional Studies , Female , Humans , Male , Microbial Sensitivity Tests , Middle Aged , Tertiary Care Centers/statistics & numerical data , Typhoid Fever/blood , Typhoid Fever/epidemiology , Typhoid Fever/microbiology , Young Adult
2.
PLoS Negl Trop Dis ; 15(12): e0010017, 2021 12.
Article in English | MEDLINE | ID: mdl-34898620

ABSTRACT

The epidemiology of typhoid fever in Lao People`s Democratic Republic is poorly defined. Estimating the burden of typhoid fever in endemic countries is complex due to the cost and limitations of population-based surveillance; serological approaches may be a more cost-effective alternative. ELISAs were performed on 937 serum samples (317 children and 620 adults) from across Lao PDR to measure IgG antibody titers against Vi polysaccharide and the experimental protein antigens, CdtB and HlyE. We measured the significance of the differences between antibody titers in adults and children and fitted models to assess the relationship between age and antibody titers. The median IgG titres of both anti-HylE and CdtB were significantly higher in children compared to adults (anti-HylE; 351.7 ELISA Units (EU) vs 198.1 EU, respectively; p<0.0001 and anti-CdtB; 52.6 vs 12.9 EU; p<0.0001). Conversely, the median anti-Vi IgG titer was significantly higher in adults than children (11.3 vs 3.0 U/ml; p<0.0001). A non-linear trend line fitted to the anti-CdtB and anti-HlyE IgG data identified a peak in antibody concentration in children <5 years of age. We identified elevated titers of anti-HlyE and anti-CdtB IgG in the serum of children residing in Lao PDR in comparison to adults. These antigens are associated with seroconversion after typhoid fever and may be a superior measure of disease burden than anti-Vi IgG. This approach is scalable and may be developed to assess the burden of typhoid fever in countries where the disease may be endemic, and evidence is required for the introduction of typhoid vaccines.


Subject(s)
Antigens, Bacterial/blood , Salmonella typhi/immunology , Typhoid Fever/blood , Adolescent , Adult , Age Factors , Antibodies, Bacterial/blood , Child , Child, Preschool , Cohort Studies , Enzyme-Linked Immunosorbent Assay , Female , Humans , Immunoglobulin G/blood , Infant , Laos/epidemiology , Male , Salmonella typhi/genetics , Typhoid Fever/epidemiology , Typhoid Fever/microbiology , Young Adult
3.
Nat Commun ; 12(1): 724, 2021 02 01.
Article in English | MEDLINE | ID: mdl-33526784

ABSTRACT

Recent advances in cell-free synthetic biology have given rise to gene circuit-based sensors with the potential to provide decentralized and low-cost molecular diagnostics. However, it remains a challenge to deliver this sensing capacity into the hands of users in a practical manner. Here, we leverage the glucose meter, one of the most widely available point-of-care sensing devices, to serve as a universal reader for these decentralized diagnostics. We describe a molecular translator that can convert the activation of conventional gene circuit-based sensors into a glucose output that can be read by off-the-shelf glucose meters. We show the development of new glucogenic reporter systems, multiplexed reporter outputs and detection of nucleic acid targets down to the low attomolar range. Using this glucose-meter interface, we demonstrate the detection of a small-molecule analyte; sample-to-result diagnostics for typhoid, paratyphoid A/B; and show the potential for pandemic response with nucleic acid sensors for SARS-CoV-2.


Subject(s)
Biosensing Techniques/methods , Gene Regulatory Networks/genetics , Glucose/analysis , Nucleic Acids/analysis , Point-of-Care Systems , Point-of-Care Testing , Biosensing Techniques/instrumentation , COVID-19/diagnosis , COVID-19/epidemiology , COVID-19/virology , Glucose/metabolism , Humans , Nucleic Acids/genetics , Pandemics , SARS-CoV-2/isolation & purification , SARS-CoV-2/physiology , Typhoid Fever/blood , Typhoid Fever/diagnosis , Typhoid Fever/microbiology
4.
Article in English | MEDLINE | ID: mdl-32026790

ABSTRACT

BACKGROUND: There is a need for rapid and accurate diagnostic biomarker for diagnosis of Salmonella fever. AIMS: The aim of the present study was to assess the importance of procalcitonin (PCT), Soluble Triggering Receptors expressed on Myeloid Cells 1 (sTREM1) and C- reactive protein (CRP) in the diagnosis of enteric fever with positive blood culture for S.typhi. METHODS: Blood samples were withdrawn from 200 patients with suspected enteric fever and subjected for the determination of CRP, PCT and sTREM-1. RESULTS: The sensitivity and specificity for PCT cut off were 97.7% & 82.5%, for CRP the sensitivity and specificity were 95.3% and 77% and for s-TREM-1 the sensitivity and specificity were 95.3% & 77%. CONCLUSION: S-TREM-1 may be considered as a novel biomarker for the diagnosis of enteric fever with good sensitivity and specificity.


Subject(s)
Triggering Receptor Expressed on Myeloid Cells-1/biosynthesis , Triggering Receptor Expressed on Myeloid Cells-1/blood , Typhoid Fever/blood , Typhoid Fever/diagnosis , Adult , Biomarkers/blood , Cross-Sectional Studies , Female , Gene Expression , Humans , Male , Procalcitonin/biosynthesis , Procalcitonin/blood , Procalcitonin/genetics , Salmonella typhi/genetics , Salmonella typhi/isolation & purification , Triggering Receptor Expressed on Myeloid Cells-1/genetics , Typhoid Fever/genetics
5.
J Trop Pediatr ; 66(5): 504-510, 2020 10 01.
Article in English | MEDLINE | ID: mdl-32016406

ABSTRACT

BACKGROUND AND AIMS: After the 2009-11 outbreak of typhoid and chikungunya (CHIK) in Thailand, an effort was made to use complete blood counts and clinical profiles to differentiate these diseases to facilitate earlier specific treatment. METHODS: Patients aged 2-15 years having fever on first visit ≤3 days without localizing signs were enrolled retrospectively. Typhoid fever was confirmed by hemoculture, dengue by nonstructural protein-1 or polymerase chain reaction (PCR), and CHIK by PCR. Febrile children with negative results for these infections were classified as other acute febrile illness (AFI). RESULTS: Of the 264 cases, 56, 164, 25 and 19 had typhoid fever, dengue viral infection (DVI), CHIK and other AFI, respectively. Arthralgia had sensitivity, specificity, positive predictive value (PPV) and negative predictive value of 0.96, 0.97, 0.80 and 0.99, respectively, to differentiate CHIK from the others. After excluding CHIK by arthralgia, the PPV of the WHO 1997 and 2009 criteria for DVI increased from 0.65 and 0.73 to 0.95 and 0.84, respectively. Children with one of myalgia, headache or leukopenia had sensitivity of 0.84, specificity of 0.76 and PPV of 0.92 to differentiate DVI from typhoid and other AFIs. Patients with one of abdominal pain, diarrhea or body temperature >39.5°C were more likely to have typhoid fever than another AFI with PPV of 0.90. CONCLUSION: Using this flow chart can help direct physicians to perform more specific tests to confirm the diagnosis and provide more specific treatment. Nevertheless, clinical follow-up is the most important tool in unknown causes of febrile illness.


Subject(s)
Chikungunya Fever/blood , Chikungunya Fever/epidemiology , Diarrhea/etiology , Disease Outbreaks/statistics & numerical data , Fever/etiology , Typhoid Fever/blood , Typhoid Fever/epidemiology , Abdominal Pain/etiology , Blood Cell Count , Chikungunya Fever/diagnosis , Child , Child, Preschool , Dengue/epidemiology , Diarrhea/epidemiology , Female , Humans , Male , Polymerase Chain Reaction , Retrospective Studies , Thailand/epidemiology , Typhoid Fever/diagnosis
6.
PLoS Negl Trop Dis ; 14(1): e0007805, 2020 01.
Article in English | MEDLINE | ID: mdl-31945052

ABSTRACT

BACKGROUND: In surveillance for typhoid fever, under-detection of cases occurs when patients with fever do not seek medical care, or seek medical care but do not receive a blood test. Missing data may result in incorrect estimates of disease incidence. METHODS: We used data from an ongoing randomised clinical trial of typhoid conjugate vaccine among children in Nepal to determine if eligible patients attending our fever clinics who did not have blood taken for culture had a lower risk of disease than those who had blood drawn. We assessed clinical and demographic predictors of having blood taken for culture, and predictors of culture-positive results. Missing blood culture data were imputed using multiple imputations. RESULTS: During the first year of surveillance, 2392 fever presentations were recorded and 1615 (68%) of these had blood cultures. Children were more likely to have blood taken for culture if they were older, had fever for longer, a current temperature ≥38 degrees, or if typhoid or a urinary tract infection were suspected. Based on imputation models, those with blood cultures were 1.87 times more likely to have blood culture-positive fever than those with missing data. CONCLUSION: Clinical opinion on the cause of the fever may play a large part in the decision to offer blood culture, regardless of study protocol. Crude typhoid incidence estimates should be adjusted for the proportion of cases that go undetected due to missing blood cultures while adjusting for the lower likelihood of culture-positivity in the group with missing data.


Subject(s)
Blood Culture/statistics & numerical data , Fever/diagnosis , Typhoid Fever/diagnosis , Adolescent , Age Factors , Child , Child, Preschool , Female , Follow-Up Studies , Humans , Incidence , Infant , Male , Missed Diagnosis , Nepal/epidemiology , Paratyphoid Fever/blood , Paratyphoid Fever/diagnosis , Paratyphoid Fever/epidemiology , Salmonella paratyphi A/isolation & purification , Salmonella typhi/isolation & purification , Typhoid Fever/blood , Typhoid Fever/epidemiology , Urinary Tract Infections
8.
Mem Inst Oswaldo Cruz ; 114: e190326, 2019.
Article in English | MEDLINE | ID: mdl-31859703

ABSTRACT

BACKGROUND: Severe bacterial infections initiate inadequate inflammation that leads to disseminated intravascular coagulation and death. OBJECTIVES: To evaluate the influence of bacterial infection on blood viscosity and red blood cells (RBCs) morphology, and the ability of Calotropis procera proteins (CpLP) to prevent the patho-hemorheology in infected animals. METHODS: Rheology of blood, atomic force microscopy measurements on specific blood elements and blood count were performed to examine changes in blood viscosity, RBCs morphology, platelets activation, and RBCs indices. FINDINGS: Infected mice hold their blood rheological behaviour as compared to that of the control group. However, they presented hyperactivated platelets, RBCs at different stages of eryptosis, and variation on RBCs indices. CpLP administration in healthy animals altered blood behaviour from pseudoplastic to Bingham-like fluid. Such effect disappeared over time and by inhibiting its proteases. No alterations were observed in RBCs morphology or platelets. Treatment of infected animals with CpLP prevented the changes in RBCs indices and morphology. MAIN CONCLUSIONS: The inflammatory process triggered by bacterial infection induced pathological changes in RBCs and platelets activation. Treatment of infected animals with CpLP prevented the emergence of RBCs abnormal morphology and this may have implications in the protective effect of CpLP, avoiding animal death.


Subject(s)
Blood Viscosity/drug effects , Calotropis/chemistry , Erythrocytes/microbiology , Hemorheology/drug effects , Plant Proteins/pharmacology , Salmonella typhi , Typhoid Fever/blood , Animals , Disease Models, Animal , Erythrocyte Count , Erythrocytes/drug effects , Male , Mice , Microscopy, Atomic Force , Plant Proteins/isolation & purification , Severity of Illness Index
9.
Clin Infect Dis ; 69(Suppl 6): S483-S491, 2019 10 30.
Article in English | MEDLINE | ID: mdl-31665778

ABSTRACT

BACKGROUND: Clearly differentiating causes of fever is challenging where diagnostic capacities are limited, resulting in poor patient management. We investigated acute febrile illness in children aged ≤15 years enrolled at healthcare facilities in Butajira, Ethiopia, during January 2012 to January 2014 for the Typhoid Fever Surveillance in Africa Program. METHODS: Blood culture, malaria microscopy, and blood analyses followed by microbiological, biochemical, and antimicrobial susceptibility testing of isolates were performed. We applied a retrospectively developed scheme to classify children as malaria or acute respiratory, gastrointestinal or urinary tract infection, or other febrile infections and syndromes. Incidence rates per 100 000 population derived from the classification scheme and multivariate logistic regression to determine fever predictors were performed. RESULTS: We rarely observed stunting (4/513, 0.8%), underweight (1/513, 0.2%), wasting (1/513, 0.2%), and hospitalization (21/513, 4.1%) among 513 children with mild transient fever and a mean disease severity score of 12 (95% confidence interval [CI], 11-13). Blood cultures yielded 1.6% (8/513) growth of pathogenic agents; microscopy detected 13.5% (69/513) malaria with 20 611/µL blood (95% CI, 15 352-25 870) mean parasite density. Incidences were generally higher in children aged ≤5 years than >5 to ≤15 years; annual incidences in young children were 301.3 (95% CI, 269.2-337.2) for malaria and 1860.1 (95% CI, 1778.0-1946.0) for acute respiratory and 379.9 (95% CI, 343.6-420.0) for gastrointestinal tract infections. CONCLUSIONS: We could not detect the etiological agents in all febrile children. Our findings may prompt further investigations and the reconsideration of policies and frameworks for the management of acute febrile illness.


Subject(s)
Epidemiological Monitoring , Fever/epidemiology , Fever/etiology , Typhoid Fever/epidemiology , Acute Disease , Adolescent , Blood Culture , Child , Child, Preschool , Ethiopia/epidemiology , Female , Gastrointestinal Diseases/epidemiology , Gastrointestinal Diseases/microbiology , Health Facilities , Humans , Infant , Malaria/epidemiology , Male , Prospective Studies , Respiratory Tract Infections/epidemiology , Respiratory Tract Infections/microbiology , Retrospective Studies , Typhoid Fever/blood
10.
PLoS Negl Trop Dis ; 13(7): e0007539, 2019 07.
Article in English | MEDLINE | ID: mdl-31314752

ABSTRACT

Typhoid fever is endemic across sub-Saharan Africa. However, estimates of the burden of typhoid are undermined by insufficient blood volumes and lack of sensitivity of blood culture. Here, we aimed to address this limitation by exploiting pre-enrichment culture followed by PCR, alongside routine blood culture to improve typhoid case detection. We carried out a prospective diagnostic cohort study and enrolled children (aged 0-4 years) with non-specific febrile disease admitted to a tertiary hospital in Blantyre, Malawi from August 2014 to July 2016. Blood was collected for culture (BC) and real-time PCR after a pre-enrichment culture in tryptone soy broth and ox-bile. DNA was subjected to PCR for invA (Pan-Salmonella), staG (S. Typhi), and fliC (S. Typhimurium) genes. A positive PCR was defined as invA plus either staG or fliC (CT<29). IgM and IgG ELISA against four S. Typhi antigens was also performed. In total, 643 children (median age 1.3 years) with nonspecific febrile disease were enrolled; 31 (4.8%) were BC positive for Salmonella (n = 13 S. Typhi, n = 16 S. Typhimurium, and n = 2 S. Enteritidis). Pre-enrichment culture of blood followed by PCR identified a further 8 S. Typhi and 15 S. Typhimurium positive children. IgM and IgG titres to the S. Typhi antigen STY1498 (haemolysin) were significantly higher in children that were PCR positive but blood culture negative compared to febrile children with all other non-typhoid illnesses. The addition of pre-enrichment culture and PCR increased the case ascertainment of invasive Salmonella disease in children by 62-94%. These data support recent burden estimates that highlight the insensitivity of blood cultures and support the targeting of pre-school children for typhoid vaccine prevention in Africa. Blood culture with real-time PCR following pre-enrichment should be used to further refine estimates of vaccine effectiveness in typhoid vaccine trials.


Subject(s)
Bacterial Load , Cost of Illness , Fever/microbiology , Typhoid Fever/epidemiology , Antigens, Bacterial/genetics , Blood Culture , Child, Preschool , Female , Fever/epidemiology , Hospitalization , Humans , Infant , Infant, Newborn , Malawi/epidemiology , Male , Prospective Studies , Salmonella typhi/genetics , Typhoid Fever/blood , Typhoid Fever/diagnosis
11.
Am J Trop Med Hyg ; 101(3): 513-520, 2019 09.
Article in English | MEDLINE | ID: mdl-31287048

ABSTRACT

Enteric fever is a major public health concern in endemic areas, particularly in infrastructure-limited countries where Salmonella Paratyphi A has emerged in increasing proportion of cases. We aimed to evaluate a method to detect Salmonella Typhi (S. Typhi) and Salmonella Paratyphi A (S. Paratyphi A) in febrile patients in Bangladesh. We conducted a prospective study enrolling patients with fever > 38°C admitted to two large urban hospitals and two outpatient clinics located in Dhaka, Bangladesh. We developed and evaluated a method combining short culture with a new molecular assay to simultaneously detect and differentiate S. Typhi and S. Paratyphi A from other Salmonella directly from 2 to 4 mL of whole blood in febrile patients (n = 680). A total of 680 cases were enrolled from the four participating sites. An increase in the detection rate (+38.8%) in S. Typhi and S. Paratyphi A was observed with a multiplex polymerase chain reaction (PCR) assay, and absence of non-typhoidal Salmonella detection was reported. All 45 healthy controls were culture and PCR negative, generating an estimated 92.9% of specificity on clinical samples. When clinical performance was assessed in the absence of blood volume prioritization for testing, a latent class model estimates clinical performance ≥ 95% in sensitivity and specificity with likelihood ratio (LR) LR+ > 10 and LR- < 0.1 for the multiplex PCR assay. The alternative method to blood culture we developed may be useful alone or in combination with culture or serological tests for epidemiological studies in high disease burden settings and should be considered as secondary endpoint test for future vaccine trials.


Subject(s)
Multiplex Polymerase Chain Reaction/standards , Salmonella paratyphi A/isolation & purification , Salmonella typhi/isolation & purification , Typhoid Fever/blood , Typhoid Fever/diagnosis , Adolescent , Adult , Bangladesh , Child , Child, Preschool , Endemic Diseases , Humans , Prospective Studies , Salmonella paratyphi A/immunology , Salmonella typhi/immunology , Sensitivity and Specificity , Serogroup , Typhoid Fever/microbiology
12.
PLoS Negl Trop Dis ; 13(5): e0007303, 2019 05.
Article in English | MEDLINE | ID: mdl-31067228

ABSTRACT

BACKGROUND: Typhoid fevers are infections caused by the bacteria Salmonella enterica serovar Typhi (Salmonella Typhi) and Paratyphi A, B and C (Salmonella Paratyphi). Approximately 17.8 million incident cases of typhoid fever occur annually, and incidence is highest in children. The accuracy of current diagnostic tests of typhoid fever is poorly understood. We aimed to determine the comparative accuracy of available tests for the pediatric population. METHODS: We first conducted a systematic literature review to identify studies that compared diagnostic tests for typhoid fever in children (aged ≤15 years) to blood culture results. We applied a Bayesian latent-class extension to a network meta-analysis model. We modelled known diagnostic properties of bone marrow culture and the relationship between bone marrow and blood culture as informative priors in a Bayesian framework. We tested sensitivities for the proportion of negative blood samples that were false as well as bone marrow sensitivity and specificity. RESULTS: We found 510 comparisons from 196 studies and 57 specific to the pediatric population. IgM-based tests outperformed their IgG-based counterparts for ELISA and Typhidot tests. The lateral flow IgG test performed comparatively well with 92% sensitivity (72% to 98% across scenario analyses) and 94% specificity. The most sensitive test of those investigated for the South Asian pediatric population was the Reverse Passive Hemagglutination Assay with 99% sensitivity (98% - 100% across scenario analyses). Adding a Widal slide test to other typhoid diagnostics did not substantially improve diagnostic performance beyond the single test alone, however, a lateral flow-based IgG rapid test combined with the typhoid/paratyphoid (TPT) assay yielded improvements in sensitivity without substantial declines in specificity and was the best performing combination test in this setting. CONCLUSION: In the pediatric population, lateral-flow IgG, TPT and Reverse Passive Hemagglutination tests had high diagnostic accuracy compared to other diagnostics. Combinations of tests may provide a feasible option to increase diagnostic sensitivity. South Asia has the most informed set of data on typhoid diagnostic testing accuracy, and the evidence base in other important regions needs to be expanded.


Subject(s)
Diagnostic Tests, Routine/methods , Typhoid Fever/diagnosis , Adolescent , Antibodies, Bacterial/blood , Bayes Theorem , Child , Child, Preschool , Diagnostic Tests, Routine/instrumentation , Diagnostic Tests, Routine/standards , Female , Humans , Male , Reagent Kits, Diagnostic/standards , Salmonella typhi/genetics , Salmonella typhi/isolation & purification , Sensitivity and Specificity , Typhoid Fever/blood , Typhoid Fever/microbiology , Young Adult
13.
Am J Trop Med Hyg ; 100(5): 1098-1100, 2019 05.
Article in English | MEDLINE | ID: mdl-30860011

ABSTRACT

Data regarding cardiac involvement in enteric fever among travelers are scarce. In this retrospective study, 59 patients were hospitalized with enteric fever during 2004-2017 and 28 had cardiac workups. Among those, four had evidence of cardiac involvement, including clinical myocarditis, electrocardiogram changes, or troponin elevation. Cardiac involvement was higher among patients infected with Salmonella Typhi than with Salmonella Paratyphi A (P = 0.08), with a significant relative risk of 6 (95% CI: 1.15-31.22, P = 0.03). Time from symptoms onset to effective treatment was longer for patients with cardiac involvement (13 versus 7.15 days, P < 0.05). It seems that cardiac involvement in enteric fever is not uncommon in travelers. Such involvement seems to be more common in patients with delay of effective treatment to the second week of illness. Although fatal or complicated cases are rare in travelers, the cardiac complication may be an important contributor to morbidity and mortality in this group.


Subject(s)
Heart Diseases/microbiology , Paratyphoid Fever/complications , Travel , Typhoid Fever/complications , Adult , Africa , Aged , Anti-Bacterial Agents/therapeutic use , Female , Heart Diseases/blood , Hospitalization , Humans , India , Male , Middle Aged , Myocarditis/microbiology , Paratyphoid Fever/blood , Paratyphoid Fever/drug therapy , Retrospective Studies , Salmonella paratyphi A/drug effects , Salmonella typhi/drug effects , Typhoid Fever/blood , Typhoid Fever/drug therapy , Young Adult
14.
Clin Infect Dis ; 68(6): 949-955, 2019 03 05.
Article in English | MEDLINE | ID: mdl-30020426

ABSTRACT

BACKGROUND: There is a need for a reliable, simple diagnostic assay for typhoid fever. Available commercial serologic assays for typhoid fever have limited sensitivity and specificity. Using high-throughput immunoscreening technologies, we previously identified several immunoreactive Salmonella Typhi antigens that seem promising for possible inclusion in a new diagnostic assay: hemolysin E (HlyE), cytolethal distending toxin, S. Typhi lipopolysaccharide (LPS), and S. Typhi membrane preparation. METHODS: We assessed plasma antibody responses (immunoglobulin [Ig] M, IgA, and IgG) to these antigens by means of enzyme-linked immunosorbent assay in patients with suspected enteric fever, controls with other febrile illnesses, and healthy controls in Dhaka, Bangladesh and performed Tubex and Typhidot tests, the Widal assay, and the typhoid/paratyphoid test (TPTest) in each patient. Using machine learning methods, we identified a parsimonious serology signature to distinguish acute typhoid cases from controls and then validated our findings in an independent test cohort from Nepal of patients with culture-confirmed S. Typhi and controls with other bacteremic illnesses. RESULTS: We demonstrated that the use of 2 antigens (HlyE and LPS) with 1 antibody isotype (IgA) could distinguish typhoid from other invasive bacterial infections (area under the receiver operating characteristic curve [AUC], 0.95; sensitivity, 90%, specificity, 92%). Use of a single antigen (HlyE) and isotype (IgA) had an AUC of 0.93. CONCLUSION: Our results suggest that development of a diagnostic assay for acute typhoid fever focused on detecting IgA responses against HlyE, with or without LPS, is warranted.


Subject(s)
Antibodies, Bacterial/immunology , Antibody Specificity , Immunoglobulin A/immunology , Salmonella typhi/immunology , Typhoid Fever/blood , Typhoid Fever/immunology , Adolescent , Adult , Antibodies, Bacterial/blood , Child , Child, Preschool , Female , Humans , Immunoglobulin A/blood , Immunoglobulin G/blood , Immunoglobulin G/immunology , Infant , Male , Middle Aged , Reproducibility of Results , Sensitivity and Specificity , Serologic Tests , Typhoid Fever/diagnosis , Typhoid Fever/microbiology , Young Adult
15.
Acta Trop ; 190: 293-295, 2019 Feb.
Article in English | MEDLINE | ID: mdl-30528158

ABSTRACT

Typhoid fever, caused by the bacterium Salmonella enterica subsp. enterica serovar Typhi, is an important cause of blood stream infections in the tropics, for which easy-to-apply molecular diagnostic approaches are desirable. The diagnostic performance of a newly introduced and a previously described loop-mediated isothermal amplification (LAMP) approach using different primer sets on a Genie II Mk2 device for the identification of Salmonella enterica ssp. enterica ser. Typhi was evaluated with well-characterized residual materials from the tropics in a case control-based approach. After in-vitro confirmation of binding characteristics of both LAMP primer sets with culture isolates (n = 112), sensitivity and specificity were 100% for the newly designed new LAMP primer set 1 with incubated blood culture materials, while specificity was reduced to 97.1% for primer set 2. For 170 EDTA blood samples, sensitivity and specificity were 10% and 98.3% for primer set 1 as well as 38.0% and 83.3% for primer set 2, respectively; qPCR from EDTA blood did not score much better with 10% sensitivity and 100% specificity. LAMP using a Genie II Mk2 device is suitable for the identification of Salmonella enterica spp. enterica ser. Typhi from incubated blood culture materials. Sensitivity and specificity were insufficient for diagnosis directly from EDTA blood samples but LAMP showed similar sensitivity as qPCR.


Subject(s)
Bacteremia/blood , Bacteremia/diagnosis , Molecular Diagnostic Techniques/instrumentation , Salmonella typhi/isolation & purification , Typhoid Fever/blood , Typhoid Fever/diagnosis , Bacteremia/microbiology , Blood Culture , Case-Control Studies , DNA Primers , Humans , Nucleic Acid Amplification Techniques , Proof of Concept Study , Real-Time Polymerase Chain Reaction , Salmonella typhi/genetics , Sensitivity and Specificity
16.
PLoS Negl Trop Dis ; 12(11): e0006961, 2018 11.
Article in English | MEDLINE | ID: mdl-30452445

ABSTRACT

Typhoid fever is a common cause of fever in Cambodian children but diagnosis and treatment are usually presumptive owing to the lack of quick and accurate tests at an initial consultation. This study aimed to evaluate the cost-effectiveness of using a rapid diagnostic test (RDT) for typhoid fever diagnosis, an immunoglobulin M lateral flow assay (IgMFA), in a remote health centre setting in Cambodia from a healthcare provider perspective. A cost-effectiveness analysis (CEA) with decision analytic modelling was conducted. We constructed a decision tree model comparing the IgMFA versus clinical diagnosis in a hypothetical cohort with 1000 children in each arm. The costs included direct medical costs only. The eligibility was children (≤14 years old) with fever. Time horizon was day seven from the initial consultation. The number of treatment success in typhoid fever cases was the primary health outcome. The number of correctly diagnosed typhoid fever cases (true-positives) was the intermediate health outcome. We obtained the incremental cost effectiveness ratio (ICER), expressed as the difference in costs divided by the difference in the number of treatment success between the two arms. Sensitivity analyses were conducted. The IgMFA detected 5.87 more true-positives than the clinical diagnosis (38.45 versus 32.59) per 1000 children and there were 3.61 more treatment successes (46.78 versus 43.17). The incremental cost of the IgMFA was estimated at $5700; therefore, the ICER to have one additional treatment success was estimated to be $1579. The key drivers for the ICER were the relative sensitivity of IgMFA versus clinical diagnosis, the cost of IgMFA, and the prevalence of typhoid fever or multi-drug resistant strains. The IgMFA was more costly but more effective than the clinical diagnosis in the base-case analysis. An IgMFA could be more cost-effective than the base-case if the sensitivity of IgMFA was higher or cost lower. Decision makers may use a willingness-to-pay threshold that considers the additional cost of hospitalisation for treatment failures.


Subject(s)
Diagnostic Tests, Routine/economics , Immunoglobulin M/blood , Typhoid Fever/diagnosis , Typhoid Fever/economics , Adolescent , Anti-Bacterial Agents/economics , Anti-Bacterial Agents/therapeutic use , Antibodies, Bacterial/blood , Cambodia , Child , Child, Preschool , Cost-Benefit Analysis , Diagnostic Tests, Routine/methods , Female , Humans , Infant , Male , Salmonella typhi/immunology , Salmonella typhi/isolation & purification , Typhoid Fever/blood , Typhoid Fever/drug therapy
17.
J Infect Dis ; 218(suppl_4): S222-S226, 2018 11 10.
Article in English | MEDLINE | ID: mdl-30304448

ABSTRACT

With impending rollout of new conjugate typhoid vaccines, better estimates of typhoid case-fatality ratio are needed for countries to set priorities for public health programs. We enrolled 1425 patients of all ages with blood culture-confirmed Salmonella Typhi from laboratory networks serving inpatients and outpatients in Dhaka, Bangladesh. Participants were asked about symptoms and complications including death experienced over a median 3-month period following blood culture diagnosis. Four fatal cases were identified (case-fatality ratio of 0.3% [95% confidence interval, .05%-.55%]). Applying this case-fatality ratio to global typhoid burden estimates would reduce deaths by 70%.


Subject(s)
Anti-Bacterial Agents/pharmacology , Salmonella typhi/isolation & purification , Typhoid Fever/blood , Typhoid Fever/mortality , Adolescent , Adult , Aged , Anti-Bacterial Agents/therapeutic use , Bangladesh/epidemiology , Blood Culture , Child , Child, Preschool , Drug Resistance, Multiple, Bacterial , Female , Humans , Male , Middle Aged , Risk Factors , Salmonella typhi/drug effects , Typhoid Fever/microbiology , Young Adult
18.
J Infect Dis ; 218(suppl_4): S255-S267, 2018 11 10.
Article in English | MEDLINE | ID: mdl-30307563

ABSTRACT

Background: Blood culture is the standard diagnostic method for typhoid and paratyphoid (enteric) fever in surveillance studies and clinical trials, but sensitivity is widely acknowledged to be suboptimal. We conducted a systematic review and meta-analysis to examine sources of heterogeneity across studies and quantified the effect of blood volume. Methods: We searched the literature to identify all studies that performed blood culture alongside bone marrow culture (a gold standard) to detect cases of enteric fever. We performed a meta-regression analysis to quantify the relationship between blood sample volume and diagnostic sensitivity. Furthermore, we evaluated the impact of patient age, antimicrobial use, and symptom duration on sensitivity. Results: We estimated blood culture diagnostic sensitivity was 0.59 (95% confidence interval [CI], 0.54-0.64) with significant between-study heterogeneity (I2, 76% [95% CI, 68%-82%]; P < .01). Sensitivity ranged from 0.51 (95% CI, 0.44-0.57) for a 2-mL blood specimen to 0.65 (95% CI, 0.58-0.70) for a 10-mL blood specimen, indicative of a relationship between specimen volume and sensitivity. Subgroup analysis showed significant heterogeneity by patient age and a weak trend towards higher sensitivity among more recent studies. Sensitivity was 34% lower (95% CI, 4%-54%) among patients with prior antimicrobial use and 31% lower after the first week of symptoms (95% CI, 19%-41%). There was no evidence of confounding by patient age, antimicrobial use, symptom duration, or study date on the relationship between specimen volume and sensitivity. Conclusions: The relationship between the blood sample volume and culture sensitivity should be accounted for in incidence and next-generation diagnostic studies.


Subject(s)
Blood Culture/standards , Blood Specimen Collection/standards , Paratyphoid Fever/diagnosis , Typhoid Fever/diagnosis , Humans , Paratyphoid Fever/blood , Sensitivity and Specificity , Typhoid Fever/blood
19.
Biosens Bioelectron ; 122: 121-126, 2018 Dec 30.
Article in English | MEDLINE | ID: mdl-30245324

ABSTRACT

We report a novel aptamer functionalized MoS2-rGO based electrochemical method for Vi polysaccharide antigen mediated detection of enteric fever. Herein, highly selective anti-Vi aptamers were screened from a pool of oligonucleotides using a microtitre based SELEX approach and characterized for its specificity and stability. The MoS2-rGO nanocomposite was synthesized using a liquid assisted exfoliation by taking optimum ratio of MoS2 and rGO. The nanocomposite presented synergistic effect owing to easy biomolecular functionalization and enhanced conductivity. The screened anti-Vi aptamers were embedded on the MoS2-rGO nanocomposite via thiol linkage to give a stable biointerface. The developed aptasensor was characterized and further evaluated for its performance with different concentrations of Vi antigen using ferrocene labeled boronic acid as an electroactive probe. The aptasensor responded linearly in the range between 0.1 ng mL-1 to 1000 ng mL-1with a detection limit of 100 pg mL-1, and did not show any cross-reactivity with other bacterial polysaccharides indicating high specificity. The applicability of the developed aptasensor was further validated in urine and sera specimens spiked with Vi antigen.


Subject(s)
Aptamers, Nucleotide/chemistry , Biosensing Techniques/methods , Graphite/chemistry , Nanocomposites/chemistry , Polysaccharides, Bacterial/blood , Polysaccharides, Bacterial/urine , Salmonella typhi/isolation & purification , Boronic Acids/chemistry , Disulfides/chemistry , Ferrous Compounds/chemistry , Humans , Limit of Detection , Metallocenes/chemistry , Molybdenum/chemistry , Nanocomposites/ultrastructure , Polysaccharides, Bacterial/analysis , Typhoid Fever/blood , Typhoid Fever/diagnosis , Typhoid Fever/microbiology , Typhoid Fever/urine
20.
J Clin Lab Anal ; 32(8): e22582, 2018 Oct.
Article in English | MEDLINE | ID: mdl-29862574

ABSTRACT

BACKGROUND: Although hematological indices cannot in entirety be used to diagnose diseases or defects, the appropriate interpretation of these indices could complement diagnostics such as microscopy and serology for numerous illnesses in children. This study sought to evaluate distinct hematological indices characterizing different childhood illnesses. METHODS: Full blood counts from 150 children (age range from 1 to 15 year) presenting different disease conditions at the Tamale Central Hospital were assessed. The hematological indices were compared between disease categories, and relationships between disease indicators were determined. RESULTS: The prevalence of the diagnosed childhood illness were: 50.7% malaria, 20.0% diarrhea, 13.3% typhoid fever, 10.0% Sickle Cell Disease (SCD), and 6.0% malaria-typhoid co-infection. Fever was diagnosed in a majority (66.0%) of the children, but was independent of each disease group, (χ2 = 9.18, P = .057). Of the 24 hematological indices analyzed, eight; red blood cell (RBC) (P < .001), hemoglobin (Hb) (P < .001), mean cell volume (MCV) (P = .002), mean cell hemoglobin (MCH) (P < .001; lowest and below normal range for SCD), red cell distribution width (RDW_CV) (P < .001), eosinophil percentage [EOS (%)] (P = .001), eosinophil number [EOS#] (P = .002), and platelets (PLT) (P = .001; lowest for malaria) differed significantly across the different disease groups. Levels of Hb and/or MCV were below the normal reference ranges for most of the diagnosed diseases. In addition, low PLT and MCH were respectively distinct for children with malaria and SCD. CONCLUSION: Hematological indices including Hb, MCV and PLT, or MCH may be useful indices that could incite further diagnostic tests for malaria or SCD among children in Ghana.


Subject(s)
Erythrocyte Indices , Malaria/blood , Typhoid Fever/blood , Adolescent , Child , Child, Preschool , Cross-Sectional Studies , Female , Ghana/epidemiology , Humans , Infant , Malaria/epidemiology , Malaria/physiopathology , Male , Prevalence , Typhoid Fever/epidemiology , Typhoid Fever/physiopathology
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