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1.
J Biotechnol ; 307: 148-163, 2020 Jan 10.
Article in English | MEDLINE | ID: mdl-31715206

ABSTRACT

Microbial valorization of plant biomass is a key target in bioeconomy. A promising candidate for consolidated bioprocessing is the dimorphic fungus Ustilago maydis. It harbors hydrolytic enzymes to degrade biomass components and naturally produces valuable secondary metabolites like itaconic acid, malic acid or glycolipids. However, hydrolytic enzymes are mainly expressed in the hyphal form. This type of morphology should be prevented in industrial fermentation processes. Genetic activation of these enzymes can enable growth on cognate substrates also in the yeast form. Here, strains were engineered for growth on polygalacturonic acid as major component of pectin. Besides activation of intrinsic enzymes, supplementation with heterologous genes for potent enzymes was tested. The presence of an unconventional secretion pathway allowed exploiting fungal and bacterial enzymes. Growth of the engineered strains was evaluated by a recently developed method for online determination of residual substrates based on the respiration activity. This enabled the quantification of the overall consumed substrate as a key asset for the assessment of the enzyme degradation potential even on polymeric substrates. Co-fermentation of endo- and exo-polygalacturonase overexpression strains resulted in efficient growth on polygalacturonic acid. In the future, the approach will be extended to establish efficient degradation and valorization of pectin.


Subject(s)
Computational Biology , Pectins/metabolism , Plants/microbiology , Ustilago/enzymology , Amino Acid Sequence , Biomass , Fermentation , Hyphae , Organ Specificity , Plants/metabolism , Sequence Alignment , Ustilago/genetics , Ustilago/growth & development
2.
PLoS Pathog ; 15(11): e1007687, 2019 11.
Article in English | MEDLINE | ID: mdl-31730668

ABSTRACT

Fungal pathogenesis depends on accurate secretion and location of virulence factors which drive host colonization. Protein glycosylation is a common posttranslational modification of cell wall components and other secreted factors, typically required for correct protein localization, secretion and function. Thus, the absence of glycosylation is associated with animal and plant pathogen avirulence. While the relevance of protein glycosylation for pathogenesis has been well established, the main glycoproteins responsible for the loss of virulence observed in glycosylation-defective fungi have not been identified. Here, we devise a proteomics approach to identify such proteins and use it to demonstrate a role for the highly conserved protein disulfide isomerase Pdi1 in virulence. We show that efficient Pdi1 N-glycosylation, which promotes folding into the correct protein conformation, is required for full pathogenic development of the corn smut fungus Ustilago maydis. Remarkably, the observed virulence defects are reminiscent of those seen in glycosylation-defective cells suggesting that the N-glycosylation of Pdi1 is necessary for the full secretion of virulence factors. All these observations, together with the fact that Pdi1 protein and RNA expression levels rise upon virulence program induction, suggest that Pdi1 glycosylation is important for normal pathogenic development in U. maydis. Our results provide new insights into the role of glycosylation in fungal pathogenesis.


Subject(s)
Glycoproteins/metabolism , Plant Diseases/microbiology , Protein Disulfide-Isomerases/metabolism , Ustilago/pathogenicity , Virulence Factors/metabolism , Zea mays/microbiology , Glycoproteins/genetics , Glycosylation , Protein Disulfide-Isomerases/genetics , Proteome/analysis , Ustilago/enzymology , Virulence , Virulence Factors/genetics
3.
BMC Microbiol ; 19(1): 208, 2019 09 05.
Article in English | MEDLINE | ID: mdl-31488050

ABSTRACT

BACKGROUND: Ustilago esculenta, a typical dimorphic fungus could infect Zizania latifolia and induce host stem swollen to form an edible vegetable called Jiaobai in China. The strains differentiation especially in the mating ability and pathogenicity is closely related to different phenotypes of Jiaobai formed in the fields. Dimorphic switching, a tightly regulated processes, is essential for the pathogenetic development of dimorphic fungi. In responses to environment cues, dimorphic switching can be activated through two conserved cell signaling pathways-PKA and MAPK pathways. Previous study indicated that exogenous arginine could induce hyphal formation in several dimorphic fungi through hydrolysis by arginase, but inhibit the dimorphic transition of U. esculenta. We conducted this study to reveal the function of arginine on dimorphic transition of U. esculenta. RESULTS: In this study, we found that arginine, but not its anabolites, could slow down the dimorphic transition of U. esculenta proportionally to the concentration of arginine. Besides, UeArginase, predicated coding arginase in U. esculenta was cloned and characterized. UeArginase mutants could actually increase the content of endogenous arginine, and slow down the dimorphic transition on either nutritious rich or poor medium. Either adding exogenous arginine or UeArginase deletion lead to down regulated expressions of UePkaC, UePrf1, mfa1.2, mfa2.1, pra1 and pra2, along with an increased content of arginine during mating process. CONCLUSION: Results of this study indicated a direct role of arginine itself on the inhibition of dimorphic transition of U. esculenta, independent of its hydrolysis by UeArginase.


Subject(s)
Arginase/metabolism , Arginine/metabolism , Cloning, Molecular , Fungal Proteins/metabolism , Ustilago/enzymology , Ustilago/growth & development , Arginase/genetics , Fungal Proteins/genetics , Hyphae/enzymology , Hyphae/genetics , Hyphae/growth & development , Hyphae/metabolism , Phylogeny , Plant Diseases/microbiology , Poaceae/microbiology , Ustilago/genetics , Ustilago/metabolism
4.
FEMS Microbiol Lett ; 366(10)2019 05 01.
Article in English | MEDLINE | ID: mdl-31183499

ABSTRACT

In the present study we determined whether Ustilago maydis accumulates autophagosomes within vacuoles when the cells are exposed to nutritional stress conditions. We investigated whether proteinase B and proteinase A are involved in their degradation. To this effect, wild type and Δpep4 mutant were incubated in minimal medium lacking a carbon source. It was observed that after incubation in nutrient-deficient media, spherical bodies appeared within the Δpep4 mutant strains vacuoles. In addition, autophagosomes were accumulated in U. maydis WT cells incubated in the presence of the serine protease inhibitor PMSF and accumulation of large autophagosomes and electrodense structures in the Δpep4 mutant cell vacuoles took place. These results demonstrate that the homologues of both, the proteinase B and the protease A, are involved in the autophagosomes degradation process in U. maydis.


Subject(s)
Autophagosomes/metabolism , Peptide Hydrolases/metabolism , Stress, Physiological , Ustilago/enzymology , Vacuoles/physiology , Aspartic Acid Endopeptidases/metabolism , Carbon/metabolism , Culture Media , Fungal Proteins/metabolism , Serine Endopeptidases/metabolism , Serine Proteinase Inhibitors/pharmacology , Ustilago/drug effects , Ustilago/genetics
5.
Biochim Biophys Acta Bioenerg ; 1860(8): 618-627, 2019 08 01.
Article in English | MEDLINE | ID: mdl-31251900

ABSTRACT

Ustilago maydis is an aerobic basidiomycete that depends on oxidative phosphorylation for its ATP supply, pointing to the mitochondrion as a key player in its energy metabolism. Mitochondrial respiratory complexes I, III2, and IV occur in supramolecular structures named respirasome. In this work, we characterized the subunit composition and the kinetics of NADH:Q oxidoreductase activity of the digitonine-solubilized respirasome (1600 kDa) and the free-complex I (990 kDa). In the presence of 2,6-dimethoxy-1,4-benzoquinone (DBQ) and cytochrome c, both the respirasome NADH:O2 and the NADH:DBQ oxidoreductase activities were inhibited by rotenone, antimycin A or cyanide. A value of 2.4 for the NADH oxidized/oxygen reduced ratio was determined for the respirasome activity, while ROS production was less than 0.001% of the oxygen consumption rate. Analysis of the NADH:DBQ oxidoreductase activity showed that respirasome was 3-times more active and showed higher affinity than free-complex I. The results suggest that the contacts between complexes I, III2 and IV in the respirasome increase the catalytic efficiency of complex I and regulate its activity to prevent ROS production.


Subject(s)
Electron Transport Chain Complex Proteins/chemistry , Mitochondria/enzymology , NADH Dehydrogenase/metabolism , Ustilago/enzymology , Basidiomycota , Electron Transport Chain Complex Proteins/metabolism , Electron Transport Complex I/metabolism , Electron Transport Complex III/metabolism , Electron Transport Complex IV/metabolism , Mitochondria/metabolism , Oxidation-Reduction , Oxidative Phosphorylation , Reactive Oxygen Species/antagonists & inhibitors , Ustilago/metabolism
6.
Nat Prod Rep ; 36(10): 1394-1411, 2019 10 01.
Article in English | MEDLINE | ID: mdl-30950477

ABSTRACT

Covering: up to the end of 2018Soraphens are a class of polyketide natural products discovered from the myxobacterial strain Sorangium cellulosum. The review is intended to provide an overview on the biosynthesis, chemistry and biological properties of soraphens, that represent a prime example to showcase the value of natural products as tools to decipher cell biology, but also to open novel therapeutic options. The prototype soraphen A is an inhibitor of acetyl coenzyme A carboxylase (ACC1/2), an enzyme that converts acetyl-CoA to malonyl-CoA and thereby controls essential cellular metabolic processes like lipogenesis and fatty acid oxidation. Soraphens illustrate how the inhibition of a single target (ACC1/2) may be explored to treat various pathological conditions: initially developed as a fungicide, efforts in the past decade were directed towards human diseases, including diabetes/obesity, cancer, hepatitis C, HIV, and autoimmune disease - and led to a synthetic molecule, discovered by virtual screening of the allosteric binding site of soraphen in ACC, that is currently in phase 2 clinical trials. We will summarize how structural analogs of soraphen A have been generated through extensive isolation efforts, genetic engineering of the biosynthetic gene cluster, semisynthesis as well as partial and total synthesis.


Subject(s)
Fungicides, Industrial/pharmacology , Macrolides/chemistry , Macrolides/pharmacology , Acetyl Coenzyme A/antagonists & inhibitors , Acetyltransferases/antagonists & inhibitors , Acetyltransferases/genetics , Acetyltransferases/metabolism , Agriculture , Animals , Antineoplastic Agents/chemistry , Antineoplastic Agents/pharmacology , Drug Design , Enzyme Inhibitors/chemistry , Enzyme Inhibitors/pharmacology , Fungicides, Industrial/chemistry , Genetic Engineering , Humans , Liver Diseases/drug therapy , Macrolides/metabolism , Molecular Structure , Saccharomyces cerevisiae/genetics , Saccharomyces cerevisiae/metabolism , Structure-Activity Relationship , Ustilago/enzymology
7.
Nat Commun ; 10(1): 1576, 2019 04 05.
Article in English | MEDLINE | ID: mdl-30952847

ABSTRACT

Ustilago maydis is a biotrophic fungus causing corn smut disease in maize. The secreted effector protein Pit2 is an inhibitor of papain-like cysteine proteases (PLCPs) essential for virulence. Pit2 inhibitory function relies on a conserved 14 amino acids motif (PID14). Here we show that synthetic PID14 peptides act more efficiently as PLCP inhibitors than the full-length Pit2 effector. Mass spectrometry shows processing of Pit2 by maize PLCPs, which releases an inhibitory core motif from the PID14 sequence. Mutational analysis demonstrates that two conserved residues are essential for Pit2 function. We propose that the Pit2 effector functions as a substrate mimicking molecule: Pit2 is a suitable substrate for apoplastic PLCPs and its processing releases the embedded inhibitor peptide, which in turn blocks PLCPs to modulate host immunity. Remarkably, the PID14 core motif is present in several plant associated fungi and bacteria, indicating the existence of a conserved microbial inhibitor of proteases (cMIP).


Subject(s)
Fungal Proteins/physiology , Ustilago/enzymology , Virulence Factors/physiology , Zea mays/microbiology , Amino Acid Motifs , Fungal Proteins/chemistry , Models, Molecular , Plant Tumors/microbiology , Virulence Factors/chemistry , Zea mays/immunology
8.
DNA Repair (Amst) ; 78: 91-101, 2019 06.
Article in English | MEDLINE | ID: mdl-31005682

ABSTRACT

Rad51 serves to maintain and protect integrity of the genome through its actions in DNA repair and replication fork protection. The active form of Rad51 is a nucleoprotein filament consisting of chains of protomer units arranged linearly along single-stranded DNA. In a mutant screen using Ustilago maydis as an experimental system we identified a novel variant of Rad51, in which an amino acid change near the protomer-protomer interaction interface confers a strong trans dominant inhibitory effect on resistance to DNA damaging agents and proficiency in homologous recombination. Modeling studies of the mutated residue D161Y suggested that steric interference with surrounding residues was the likely cause of the inhibitory effect. Changes of two nearby residues, predicted from the modeling to minimize steric clashes, mitigated the inhibition of DNA repair. Direct testing of purified Rad51D161Y protein in defined biochemical reactions revealed it to be devoid of DNA-binding activity itself, but capable of interfering with Rad51WT in formation and maintenance of nucleoprotein filaments on single-stranded DNA and in DNA strand exchange. Rad51D161Y protein appears to be unable to self-associate in solution and defective in forming complexes with the U. maydis BRCA2 ortholog.


Subject(s)
Mutant Proteins/genetics , Mutant Proteins/metabolism , Mutation , Rad51 Recombinase/genetics , Rad51 Recombinase/metabolism , Ustilago/enzymology , Alleles , Amino Acid Sequence , DNA Damage , Mutant Proteins/chemistry , Phenotype , Rad51 Recombinase/chemistry
9.
Fungal Genet Biol ; 129: 52-64, 2019 08.
Article in English | MEDLINE | ID: mdl-30980908

ABSTRACT

Adaptation to the environment is a requirement for the survival of every organism. For pathogenic fungi this also implies coping with the different conditions that occur during the infection cycle. After detecting changes to external media, organisms must modify their gene expression patterns in order to accommodate the new circumstances. Control of gene expression is a complex process that involves the coordinated action of multiple regulatory elements. Chromatin modification is a well-known mechanism for controlling gene expression in response to environmental changes in all eukaryotes. In pathogenic fungi, chromatin modifications are known to play crucial roles in controlling host interactions and their virulence capacity, yet little is known about the specific genes they directly target and to which signals they respond. The smut fungus Ustilago maydis is an excellent model system in which multiple molecular and cellular approaches are available to study biotrophic interactions. Many target genes regulated during the infection process have been well studied, however, how they are controlled and specifically how chromatin modifications affect gene regulation in the context of infection is not well known in this organism. Here, we analyse the presence of chromatin modifying enzymes and complexes in U. maydis and discuss their putative roles in this plant pathogen in the context of findings from other organisms, including other plant pathogens such as Magnaporthe oryzae and Fusarium graminearum. We propose U. maydis as a remarkable organism with interesting chromatin features, which would allow finding new functions of chromatin modifications during plant pathogenesis.


Subject(s)
Chromatin/genetics , Histone Code , Plant Diseases/microbiology , Ustilago/genetics , Fungal Proteins/genetics , Gene Expression Regulation, Fungal , Histone Acetyltransferases/genetics , Ustilago/enzymology , Ustilago/pathogenicity , Virulence
10.
Rev. iberoam. micol ; 36(1): 1-8, ene.-mar. 2019. graf, ilus, tab
Article in English | IBECS | ID: ibc-185486

ABSTRACT

Background: The enzyme 3-hydroxy-3-methylglutaryl coenzyme A reductase (Hmgr) catalyzes the synthesis of mevalonate, a key compound for the synthesis of cholesterol in humans and ergosterol in fungi. Since the Hmgr enzymes of Saccharomyces cerevisiae, Schizosaccharomyces pombe and Candida glabrata are similar to the Hmgr enzymes of mammals, fungal Hmgr enzymes have been proposed as a model for studying antifungal agents. Aims: To examine the correlation between inhibiting Um-Hmgr enzyme and the viability, sterols synthesis and mating in Ustilago maydis. Methods: Using in silico analysis, the ORF codifying for Um-Hmgr was identified and the protein characteristics were deduced. The effect of the competitive inhibitors of Um-Hmgr on the viability of this basidiomycota, the synthesis of its sterols, and its mating were evaluated. Results: The Umhmgr gene (XP_011389590.1) identified putatively codifies a protein of 1443 aa (ca. MW = 145.5 kDa) that has a possible binding domain in the endoplasmic reticulum (ER) and high identity with the Hmgr catalytic domain of humans and other yeasts. The inhibition of Um-Hmgr caused a decrease of viability and synthesis of sterols, and also the inhibition of mating. The activity of Um-Hmgr is mainly located in the membrane fraction of the fungus. Conclusions: Given our results we believe U. maydis is a valid model for studying synthetic inhibitors with lipid-lowering or antifungal activity. Additionally, we propose the Hmgr enzyme as an alternative molecular target to develop compounds for treating both phytopathogenic and pathogenic human fungi


Antecedentes: La enzima 3-hidroxi-3-metilglutaril-coenzima A-reductasa (Hmgr) cataliza la síntesis de mevalonato, compuesto clave precursor en la biosíntesis del colesterol en el ser humano y en la del ergosterol en los hongos. Las enzimas Hmgr de Saccharomyces cerevisiae, Schizosaccharomyces pombe y Candida glabrata presentan similitud con la Hmgr de los mamíferos, motivo por el cual se han propuesto como modelo para el estudio de antifúngicos. Objetivos: Estudiar la correlación que existe entre la inhibición de la enzima Um-Hmgr y la viabilidad, la síntesis de esteroles y el mating en Ustilago maydis. Métodos: Por medio de un análisis in silico se identificó el ORF de la Um-Hmgr, y se dedujeron las características de la proteína. Se evaluó el efecto de los inhibidores competitivos de la enzima Um-Hmgr en la viabilidad, la síntesis de esteroles y el mating. Resultados: El gen Umhmgr (XP_011389590.1) codifica una proteína putativa de 1.443 aa (MW = 145,5 kDa), con un posible dominio de unión al retículo endoplásmico (RE) y una identidad alta con el dominio catalítico de la Hmgr humana y de otras levaduras. La inhibición de la Um-Hmgr ocasionó una disminución en la viabilidad y síntesis de esteroles del hongo, así como la inhibición del mating. La actividad de la Um-Hmgr está localizada principalmente en la fracción membranal del hongo. Conclusiones: La enzima Um-Hmgr está anclada probablemente al RE y presenta una elevada homología con el dominio catalítico de otras Hmgr de eucariotas. La Um-Hmgr participa en la síntesis de esteroles de este basidiomiceto, y su inhibición provoca la pérdida de la viabilidad, la reducción de los niveles de esteroles y del mating del hongo


Subject(s)
Humans , Hydroxymethylglutaryl-CoA Reductase Inhibitors/pharmacology , Microbial Viability/drug effects , Simvastatin/pharmacology , Ustilago/drug effects , Ustilago/enzymology , Sterols/biosynthesis , Ustilago/physiology
11.
Rev Iberoam Micol ; 36(1): 1-8, 2019.
Article in English | MEDLINE | ID: mdl-30745018

ABSTRACT

BACKGROUND: The enzyme 3-hydroxy-3-methylglutaryl coenzyme A reductase (Hmgr) catalyzes the synthesis of mevalonate, a key compound for the synthesis of cholesterol in humans and ergosterol in fungi. Since the Hmgr enzymes of Saccharomyces cerevisiae, Schizosaccharomyces pombe and Candida glabrata are similar to the Hmgr enzymes of mammals, fungal Hmgr enzymes have been proposed as a model for studying antifungal agents. AIMS: To examine the correlation between inhibiting Um-Hmgr enzyme and the viability, sterols synthesis and mating in Ustilago maydis. METHODS: Using in silico analysis, the ORF codifying for Um-Hmgr was identified and the protein characteristics were deduced. The effect of the competitive inhibitors of Um-Hmgr on the viability of this basidiomycota, the synthesis of its sterols, and its mating were evaluated. RESULTS: The Umhmgr gene (XP_011389590.1) identified putatively codifies a protein of 1443 aa (ca. MW=145.5kDa) that has a possible binding domain in the endoplasmic reticulum (ER) and high identity with the Hmgr catalytic domain of humans and other yeasts. The inhibition of Um-Hmgr caused a decrease of viability and synthesis of sterols, and also the inhibition of mating. The activity of Um-Hmgr is mainly located in the membrane fraction of the fungus. CONCLUSIONS: Given our results we believe U. maydis is a valid model for studying synthetic inhibitors with lipid-lowering or antifungal activity. Additionally, we propose the Hmgr enzyme as an alternative molecular target to develop compounds for treating both phytopathogenic and pathogenic human fungi.


Subject(s)
Hydroxymethylglutaryl-CoA Reductase Inhibitors/pharmacology , Microbial Viability/drug effects , Simvastatin/pharmacology , Ustilago/drug effects , Ustilago/enzymology , Sterols/biosynthesis , Ustilago/physiology
12.
Nature ; 565(7741): 650-653, 2019 01.
Article in English | MEDLINE | ID: mdl-30651637

ABSTRACT

Fungi-induced plant diseases affect global food security and plant ecology. The biotrophic fungus Ustilago maydis causes smut disease in maize (Zea mays) plants by secreting numerous virulence effectors that reprogram plant metabolism and immune responses1,2. The secreted fungal chorismate mutase Cmu1 presumably affects biosynthesis of the plant immune signal salicylic acid by channelling chorismate into the phenylpropanoid pathway3. Here we show that one of the 20 maize-encoded kiwellins (ZmKWL1) specifically blocks the catalytic activity of Cmu1. ZmKWL1 hinders substrate access to the active site of Cmu1 through intimate interactions involving structural features that are specific to fungal Cmu1 orthologues. Phylogenetic analysis suggests that plant kiwellins have a versatile scaffold that can specifically counteract pathogen effectors such as Cmu1. We reveal the biological activity of a member of the kiwellin family, a widely conserved group of proteins that have previously been recognized only as important human allergens.


Subject(s)
Antigens, Plant/metabolism , Plant Diseases/microbiology , Ustilago/metabolism , Ustilago/pathogenicity , Virulence Factors/metabolism , Zea mays/metabolism , Zea mays/microbiology , Chorismate Mutase/antagonists & inhibitors , Chorismate Mutase/chemistry , Chorismate Mutase/metabolism , Chorismic Acid/metabolism , Models, Molecular , Phylogeny , Plant Diseases/immunology , Salicylic Acid/immunology , Ustilago/enzymology , Zea mays/immunology
13.
Biotechnol Lett ; 41(2): 241-252, 2019 Feb.
Article in English | MEDLINE | ID: mdl-30519796

ABSTRACT

OBJECTIVES: Ustilago maydis lipase A (UMLA) expressed in Pichia pastoris was compared with Candida antarctica lipase A (CALA) to study its biochemical properties such as thermostability and selectivity. RESULTS: UMLA had similar behavior to its homologue CALA regarding the effect of pH and temperature on enzymatic activity, substrate preference and selectivity. Both lipases were active on insoluble triglycerides as well as natural oils and hydrolyzed preferably esters with short and medium acyl and alkyl chains. Both enzymes were slightly selective for the (S)-glycidyl butyrate enantiomer and had a remarkable preference for the sn-2 position of triglycerides. The optimal activity was 40 and 50 °C for UMLA and CALA, respectively. However, temperature had a greater effect on the stability of UMLA compared to CALA, observing a half-life at 50 °C of 2.07 h and 12.83 h, respectively. CONCLUSIONS: UMLA shares some biochemical properties with CALA such as the sn-2 preference on triglyceride hydrolysis and transesterification. However, the high thermostability attributed to CALA was not observed in UMLA; this can be due to the lack of stabilization via AXXXA motifs in helices and fewer proline residues at the surface.


Subject(s)
Candida/enzymology , Lipase/genetics , Recombinant Proteins/chemistry , Recombinant Proteins/metabolism , Ustilago/enzymology , Enzyme Stability , Esterification , Fungal Proteins/chemistry , Fungal Proteins/genetics , Fungal Proteins/metabolism , Half-Life , Hydrogen-Ion Concentration , Hydrolysis , Lipase/chemistry , Lipase/metabolism , Substrate Specificity , Thermodynamics , Triglycerides/metabolism
14.
Mol Biol Rep ; 45(5): 1155-1163, 2018 Oct.
Article in English | MEDLINE | ID: mdl-30076522

ABSTRACT

The pep4um gene (um04926) of Ustilago maydis encodes a protein related to either vacuolar or lysosomal aspartic proteases. Bioinformatic analysis of the Pep4um protein revealed that it is a soluble protein with a signal peptide suggesting that it likely passes through the secretory pathway, and it has two probable self-activation sites, which are similar to those in Saccharomyces cerevisiae PrA. Moreover, the active site of the Pep4um has the two characteristic aspartic acid residues of aspartyl proteases. The pep4um gene was cloned, expressed in Pichia pastoris and a 54 kDa recombinant protein was observed. Pep4um-rec was confirmed to be an aspartic protease by specifically inhibiting its enzymatic activity with pepstatin A. Pep4um-rec enzymatic activity on acidic hemoglobin was optimal at pH 4.0 and at 40 °C. To the best of our knowledge this is the first report about the heterologous expression of an aspartic protease from a basidiomycete. An in-depth in silico analysis suggests that Pep4um is homolog of the human cathepsin D protein. Thus, the Pep4um-rec protein may be used to test inhibitors of human cathepsin D, an important breast cancer therapeutic target.


Subject(s)
Aspartic Acid Endopeptidases/chemistry , Aspartic Acid Endopeptidases/genetics , Cloning, Molecular/methods , Ustilago/enzymology , Aspartic Acid Endopeptidases/metabolism , Catalytic Domain , Cathepsin D/genetics , Computer Simulation , Fungal Proteins/chemistry , Fungal Proteins/genetics , Fungal Proteins/metabolism , Humans , Models, Molecular , Molecular Weight , Phylogeny , Pichia/genetics , Pichia/growth & development , Protein Sorting Signals , Protein Structure, Tertiary , Sequence Homology, Amino Acid , Ustilago/genetics
15.
New Phytol ; 220(1): 249-261, 2018 10.
Article in English | MEDLINE | ID: mdl-29916208

ABSTRACT

Fungalysins from several phytopathogenic fungi have been shown to be involved in cleavage of plant chitinases. While fungal chitinases are responsible for cell wall remodeling during growth and morphogenesis, plant chitinases are important components of immunity. This study describes a dual function of the Ustilago maydis fungalysin UmFly1 in modulation of both plant and fungal chitinases. Genetic, biochemical and microscopic experiments were performed to elucidate the in vitro and in planta functions of U. maydis UmFly1. U. maydis ∆umfly1 mutants show significantly reduced virulence, which coincides with reduced cleavage of the maize chitinase ZmChiA within its chitin-binding domain. Moreover, deletion of umfly1 affected the cell separation of haploid U. maydis sporidia. This phenotype is associated with posttranslational activation of the endogenous chitinase UmCts1. Genetic complementation of the ∆umfly1 mutant with a homologous gene from closely related, but nonpathogenic, yeast fully rescued the cell separation defect in vitro, but it could not recover the ∆umfly1 defect in virulence and cleavage of the maize chitinase. We report on the dual function of the secreted fungalysin UmFly1. We hypothesize that co-evolution of U. maydis with its host plant extended the endogenous function of UmFly1 towards the modulation of plant chitinase activity to promote infection.


Subject(s)
Fungal Proteins/metabolism , Metalloproteases/metabolism , Ustilago/enzymology , Chitinases/genetics , Chitinases/metabolism , Conserved Sequence , Evolution, Molecular , Fungal Proteins/genetics , Gene Expression Regulation, Fungal , Genes, Fungal , Mutation/genetics , Plant Leaves/genetics , Plant Leaves/microbiology , Spores, Fungal/physiology , Ustilago/genetics , Virulence Factors/metabolism , Zea mays/microbiology
16.
Fungal Genet Biol ; 114: 42-52, 2018 05.
Article in English | MEDLINE | ID: mdl-29580862

ABSTRACT

In most organisms, galactose is metabolized via the Leloir pathway, which is conserved from bacteria to mammals. Utilization of galactose requires a close interplay of the metabolic enzymes, as misregulation or malfunction of individual components can lead to the accumulation of toxic intermediate compounds. For the phytopathogenic basidiomycete Ustilago maydis, galactose is toxic for wildtype strains, i.e. leads to growth repression despite the presence of favorable carbon sources as sucrose. The galactose sensitivity can be relieved by two independent modifications: (1) by disruption of Hxt1, which we identify as the major transporter for galactose, and (2) by a point mutation in the gene encoding the galactokinase Gal1, the first enzyme of the Leloir pathway. The mutation in gal1(Y67F) leads to reduced enzymatic activity of Gal1 and thus may limit the formation of putatively toxic galactose-1-phosphate. However, systematic deletions and double deletions of different genes involved in galactose metabolism point to a minor role of galactose-1-phosphate in galactose toxicity. Our results show that molecular triggers for galactose toxicity in U. maydis differ from yeast and mammals.


Subject(s)
Galactose/metabolism , Ustilago/enzymology , Ustilago/genetics , Amino Acid Sequence , Fungal Proteins/genetics , Fungal Proteins/metabolism , Galactokinase/genetics , Galactokinase/metabolism , Galactosephosphates/metabolism , Gene Expression Regulation, Fungal , Genes, Fungal/genetics , Metabolic Networks and Pathways , Mutagenesis , Sequence Deletion
17.
DNA Repair (Amst) ; 63: 47-55, 2018 03.
Article in English | MEDLINE | ID: mdl-29414053

ABSTRACT

Cells maintain a small arsenal of resolving functions to process and eliminate complex DNA intermediates that result as a consequence of homologous recombination and distressed replication. Ordinarily the homologous recombination system serves as a high-fidelity mechanism to restore the integrity of a damaged genome, but in the absence of the appropriate resolving function it can turn DNA intermediates resulting from replication stress into pathological forms that are toxic to cells. Here we have investigated how the nucleases Mus81 and Gen1 and the helicase Blm contribute to survival after DNA damage or replication stress in Ustilago maydis cells with crippled yet homologous recombination-proficient forms of Brh2, the BRCA2 ortholog and primary Rad51 mediator. We found collaboration among the factors. Notable were three findings. First, the ability of Gen1 to rescue hydroxyurea sensitivity of dysfunctional Blm requires the absence of Mus81. Second, the response of mutants defective in Blm and Gen1 to hydroxyurea challenge is markedly similar suggesting cooperation of these factors in the same pathway. Third, the repair proficiency of Brh2 mutant variants deleted of its N-terminal DNA binding region requires not only Rad52 but also Gen1 and Mus81. We suggest these factors comprise a subpathway for channeling repair when Brh2 is compromised in its interplay with DNA.


Subject(s)
DNA Replication , Recombinational DNA Repair , Ustilago/metabolism , BRCA2 Protein/metabolism , DNA/drug effects , DNA/metabolism , Endonucleases/metabolism , Fungal Proteins/metabolism , Holliday Junction Resolvases/metabolism , Hydroxyurea/toxicity , Mutagens/toxicity , Rad51 Recombinase/metabolism , RecQ Helicases/metabolism , Ustilago/drug effects , Ustilago/enzymology , Ustilago/genetics
18.
Biochim Biophys Acta Bioenerg ; 1858(12): 975-981, 2017 Dec.
Article in English | MEDLINE | ID: mdl-28919501

ABSTRACT

Ustilago maydis is an aerobic basidiomycete that fully depends on oxidative phosphorylation for its supply of ATP, pointing to mitochondria as a key player in the energy metabolism of this organism. Mitochondrial F1F0-ATP synthase occurs in supramolecular structures. In this work, we isolated the monomer (640kDa) and the dimer (1280kDa) and characterized their subunit composition and kinetics of ATP hydrolysis. Mass spectrometry revealed that dimerizing subunits e and g were present in the dimer but not in the monomer. Analysis of the ATPase activity showed that both oligomers had Michaelis-Menten kinetics, but the dimer was 7 times more active than the monomer, while affinities were similar. The dimer was more sensitive to oligomycin inhibition, with a Ki of 24nM, while the monomer had a Ki of 169nM. The results suggest that the interphase between the monomers in the dimer state affects the catalytic efficiency of the enzyme and its sensitivity to inhibitors.


Subject(s)
Adenosine Triphosphate/metabolism , Mitochondrial Proton-Translocating ATPases/chemistry , Protein Multimerization/genetics , Protein Subunits/chemistry , Adenosine Triphosphate/chemistry , Amino Acid Sequence/genetics , Energy Metabolism/genetics , Hydrolysis/drug effects , Kinetics , Mass Spectrometry , Mitochondria/enzymology , Mitochondrial Proton-Translocating ATPases/genetics , Mitochondrial Proton-Translocating ATPases/metabolism , Oligomycins/pharmacology , Protein Subunits/metabolism , Ustilago/enzymology
19.
Biochemistry ; 56(26): 3318-3327, 2017 07 05.
Article in English | MEDLINE | ID: mdl-28616972

ABSTRACT

Brh2, the BRCA2 ortholog in the fungus Ustilago maydis, mediates delivery of Rad51 to DNA during the course of homology-directed DNA repair. Rad51 interacts with Brh2 through the highly conserved BRC element and through a second region termed CRE located at the extreme carboxy terminus. Dss1, a small intrinsically unstructured protein that interacts with Brh2, is crucial for its activity in DNA repair, but the mechanism of this regulation is uncertain. In previous studies, we found that interaction of Brh2 with DNA was strongly modulated by association with Dss1. Here we report that CRE influences interaction of Dss1 with Brh2 and that Dss1 status markedly alters interaction of Brh2 with Rad51. While it appears that a single Rad51 protomer associates with Brh2 in complex with Dss1, loss of Dss1 is accompanied by a large increase in the number of Rad51 protomers that can associate with Brh2. Concomitant with this buildup of Rad51, Brh2 loses its ability to bind DNA. These observations suggest a feedback circuit in which release of Dss1 from Brh2 as it binds DNA triggers nucleation of a short Rad51 oligomer on Brh2, which in turn promotes dissociation of Brh2 from the DNA.


Subject(s)
Carrier Proteins/metabolism , DNA, Single-Stranded/metabolism , Exoribonucleases/metabolism , Fungal Proteins/metabolism , Models, Molecular , Rad51 Recombinase/metabolism , Ustilago/metabolism , Amino Acid Motifs , Binding Sites , Carrier Proteins/chemistry , Carrier Proteins/genetics , DNA, Single-Stranded/chemistry , Electrophoretic Mobility Shift Assay , Enzyme Stability , Exoribonucleases/chemistry , Exoribonucleases/genetics , Fungal Proteins/chemistry , Fungal Proteins/genetics , Kinetics , Peptide Fragments/chemistry , Peptide Fragments/genetics , Peptide Fragments/metabolism , Protein Folding , Protein Interaction Domains and Motifs , Protein Interaction Mapping , Protein Multimerization , Protein Stability , Rad51 Recombinase/chemistry , Rad51 Recombinase/genetics , Recombinant Fusion Proteins/chemistry , Recombinant Fusion Proteins/metabolism , Solubility , Ustilago/enzymology
20.
Mol Plant Pathol ; 18(2): 210-221, 2017 02.
Article in English | MEDLINE | ID: mdl-26950180

ABSTRACT

Ustilago maydis is an obligate biotrophic fungal pathogen which causes common smut disease of corn. To proliferate in host tissue, U. maydis must gain access to nutrients and overcome plant defence responses, such as the production of reactive oxygen species. The elucidation of the mechanisms by which U. maydis meets these challenges is critical for the development of strategies to combat smut disease. In this study, we focused on the contributions of phospholipases (PLs) to the pathogenesis of corn smut disease. We identified 11 genes encoding putative PLs and characterized the transcript levels for these genes in the fungus grown in culture and during infection of corn tissue. To assess the contributions of specific PLs, we focused on two genes, lip1 and lip2, which encode putative phospholipase A2 (PLA2 ) enzymes with similarity to platelet-activating factor acetylhydrolases. PLA2 enzymes are known to counteract oxidative damage to lipids in other organisms. Consistent with a role in the mitigation of oxidative damage, lip2 mutants were sensitive to oxidative stress provoked by hydrogen peroxide and by increased production of reactive oxygen species caused by inhibitors of mitochondrial functions. Importantly, mutants defective in lip2, but not lip1, were attenuated for virulence in corn seedlings. Finally, a comparative analysis of fatty acid and cardiolipin profiles in the wild-type strain and a lip2 mutant revealed differences consistent with a protective role for Lip2 in maintaining lipid homeostasis and mitochondrial health during proliferation in the hostile host environment.


Subject(s)
Fungal Proteins/metabolism , Oxidative Stress , Phospholipases/metabolism , Ustilago/enzymology , Ustilago/pathogenicity , Cardiolipins/metabolism , Cell Respiration , Fungal Proteins/genetics , Gene Deletion , Genome, Fungal , Haploidy , Mutation/genetics , RNA, Messenger/genetics , RNA, Messenger/metabolism , Ustilago/cytology , Ustilago/genetics , Virulence/genetics
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