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1.
Indian J Med Microbiol ; 49: 100611, 2024.
Article in English | MEDLINE | ID: mdl-38735644

ABSTRACT

Non-O1/non-O139 Vibrio cholerae, a comparably poorly studied pathogen is culpable of sporadic but serious infections. We report a case of non O1 non O139 Vibrio cholerae septicemia in a middle aged male recently diagnosed with carcinoma pancreas. He underwent biliary tract interventional procedure for hematemesis three weeks before the presentation. Now, he presented with fever, abdominal pain, hematemesis and melena. Endoscopy revealed severe portal hypertensive gastropathy and mild hemobilia. Blood culture grew Vibrio cholerae, identified as non O1 non O139 by serogrouping. He recovered successfully with timely diagnosis, appropriate antibiotics and supportive measures.


Subject(s)
Anti-Bacterial Agents , Pancreatic Neoplasms , Sepsis , Vibrio cholerae non-O1 , Humans , Male , Pancreatic Neoplasms/complications , Pancreatic Neoplasms/microbiology , Vibrio cholerae non-O1/isolation & purification , Vibrio cholerae non-O1/classification , Vibrio cholerae non-O1/pathogenicity , Vibrio cholerae non-O1/genetics , Sepsis/microbiology , Sepsis/diagnosis , Middle Aged , Anti-Bacterial Agents/therapeutic use , Cholera/microbiology , Cholera/diagnosis , Cholera/complications , Vibrio Infections/diagnosis , Vibrio Infections/microbiology
2.
Infect Genet Evol ; 120: 105587, 2024 Jun.
Article in English | MEDLINE | ID: mdl-38518953

ABSTRACT

Non-O1/non-O139 Vibrio cholerae (NOVC) are ubiquitous in aquatic ecosystems. In rare cases, they can cause intestinal and extra-intestinal infections in human. This ability is associated with various virulence factors. The presence of NOVC in German North Sea and Baltic Sea was observed in previous studies. However, data on virulence characteristics are still scarce. Therefore, this work aimed to investigating the virulence potential of NOVC isolated in these two regions. In total, 31 NOVC strains were collected and subjected to whole genome sequencing. In silico analysis of the pathogenic potential was performed based on the detection of genes involved in colonization and virulence. Phenotypic assays, including biofilm formation, mobility and human serum resistance assays were applied for validation. Associated toxin genes (hlyA, rtxA, chxA and stn), pathogenicity islands (Vibrio pathogenicity island 2 (VPI-II) and Vibrio seventh pathogenicity island 2 (VSP-II)) and secretion systems (Type II, III and VI secretion system) were observed. A maximum likelihood analysis from shared core genes revealed a close relationship between clinical NOVCs published in NCBI and environmental strains from this study. NOVC strains are more mobile at 37 °C than at 25 °C, and 68% of the NOVC strains could form strong biofilms at both temperatures. All tested strains were able to lyse erythrocytes from both human and sheep blood. Additionally, one strain could survive up to 60% and seven strains up to 40% human serum at 37 °C. Overall, the genetic virulence profile as well as the phenotypic virulence characteristics of the investigated NOVC from the German North Sea and Baltic Sea suggest potential human pathogenicity.


Subject(s)
Vibrio cholerae non-O1 , Virulence Factors , Virulence Factors/genetics , Humans , Virulence/genetics , Vibrio cholerae non-O1/genetics , Vibrio cholerae non-O1/pathogenicity , Vibrio cholerae non-O1/isolation & purification , Germany , Genomic Islands/genetics , Biofilms/growth & development , Phylogeny , North Sea , Vibrio cholerae/genetics , Vibrio cholerae/pathogenicity , Vibrio cholerae/classification , Cholera/microbiology , Animals , Whole Genome Sequencing
3.
Medicine (Baltimore) ; 100(25): e26460, 2021 Jun 25.
Article in English | MEDLINE | ID: mdl-34160447

ABSTRACT

RATIONALE: Acute hemorrhagic necrotizing enterocolitis (AHNE) is a rapidly progressive and extremely dangerous disease. Here we report a rare case caused by Vibrio cholerae (V cholerae). PATIENT CONCERNS: A 70-year-old man was admitted to our emergency department because of a sudden loss of consciousness. DIAGNOSES: On admission with severe toxic shock, the patient presented with elevated body temperature, decreased blood pressure, abdominal tenderness and rebound pain, predominantly on the right side. Computed tomography showed swelling and thickening of the right colon and peritoneal effusion. Necrosis was found in the hepatic flexure of the colon. On the basis of these results, the patient was diagnosed with AHNE. INTERVENTIONS AND OUTCOMES: After fluid resuscitation, an exploratory laparotomy was performed immediately. The procedure was successful. Despite antibiotic therapy, the patient's clinical condition progressively deteriorated and he died of multi-organ failure on day 3 after admission. LESSONS: AHNE is a rapidly progressive and extremely dangerous disease. Here we report a case of AHNE caused by non-O1/non-O139 V cholerae infection. The clinical features, phenotypic analyses and the presence of a panel of known virulence genes in the isolated strain are described. To the best of our knowledge, this is the first report of V cholerae causing severe AHNE, which is of profound pedagogical significance.


Subject(s)
Cholera/diagnosis , Enterocolitis, Necrotizing/diagnosis , Multiple Organ Failure/microbiology , Vibrio cholerae non-O1/pathogenicity , Aged , Anti-Bacterial Agents/therapeutic use , Cholera/complications , Cholera/microbiology , Cholera/therapy , Colon/diagnostic imaging , Colon/microbiology , Colon/pathology , Colon/surgery , Enterocolitis, Necrotizing/complications , Enterocolitis, Necrotizing/microbiology , Enterocolitis, Necrotizing/therapy , Fatal Outcome , Fluid Therapy , Humans , Male , Tomography, X-Ray Computed , Vibrio cholerae non-O1/isolation & purification
4.
BMC Infect Dis ; 20(1): 618, 2020 Aug 24.
Article in English | MEDLINE | ID: mdl-32831039

ABSTRACT

BACKGROUND: Vibrio cholerae are oxidase-positive bacteria that are classified into various serotypes based on the O surface antigen. V. cholerae serotypes are divided into two main groups: the O1 and O139 group and the non-O1/non-O139 group. O1 and O139 V. cholerae are related to cholera infection, whereas non-O1/non-O139 V. cholerae (NOVC) can cause cholera-like diarrhea. A PubMed search revealed that only 16 cases of necrotizing fasciitis caused by NOVC have been recorded in the scientific literature to date. We report the case of a Japanese woman who developed necrotizing fasciitis caused by NOVC after traveling to Taiwan and returning to Japan. CASE PRESENTATION: A 63-year-old woman visited our hospital because she had experienced left knee pain for the past 3 days. She had a history of colon cancer (Stage IV: T3N3 M1a) and had received chemotherapy. She had visited Taiwan 5 days previously, where she had received a massage. She was diagnosed with septic shock owing to necrotizing fasciitis. She underwent fasciotomy and received intensive care. She recovered from the septic shock; however, after 3 weeks, she required an above-knee amputation for necrosis and infection. Her condition improved, and she was discharged after 22 weeks in the hospital. CONCLUSIONS: With the increase in tourism, it is important for clinicians to check patients' travel history. Clinicians should be alert to the possibility of necrotizing fasciitis in patients with risk factors. Necrotizing fasciitis caused by NOVC is severe and requires early fasciotomy and debridement followed by intensive postoperative care.


Subject(s)
Fasciitis, Necrotizing/therapy , Vibrio Infections/complications , Vibrio Infections/therapy , Vibrio cholerae non-O1/pathogenicity , Amputation, Surgical , Critical Care , Diarrhea/complications , Fasciitis, Necrotizing/diagnosis , Female , Humans , Japan , Leg/surgery , Middle Aged , Risk Factors , Shock, Septic/etiology , Shock, Septic/microbiology , Shock, Septic/therapy , Taiwan , Travel , Vibrio Infections/diagnosis
5.
J Int Med Res ; 48(6): 300060520933459, 2020 Jun.
Article in English | MEDLINE | ID: mdl-32571124

ABSTRACT

In recent decades, increasing numbers of human infections have been linked to non-O1/non-O139 Vibrio cholerae. Septicemia resulting from non-O1/non-O139 V. cholerae infection is rare but has high mortality. The pathogenesis of non-O1/non-O139 V. cholerae septicemia is poorly understood. Here, we report two sporadic cases of septicemia following non-O1/non-O139 V. cholerae infection from an inland area of China. Patient 1 died rapidly within 24 hours, while patient 2 gradually recovered from septic shock. To explore the reasons for these divergent outcomes, we compared the two cases, tested the antibiotic sensitivity of the two isolates, and investigated their virulence genes and sequence types.


Subject(s)
Shock, Septic/microbiology , Vibrio cholerae/genetics , Vibrio cholerae/pathogenicity , Adult , Anti-Bacterial Agents , Bacterial Proteins/genetics , China , Humans , Male , Shock, Septic/mortality , Shock, Septic/therapy , Treatment Outcome , Vibrio cholerae/isolation & purification , Vibrio cholerae non-O1/genetics , Vibrio cholerae non-O1/pathogenicity , Virulence/genetics
6.
Environ Microbiol ; 22(10): 4342-4355, 2020 10.
Article in English | MEDLINE | ID: mdl-32337781

ABSTRACT

The bacterium Vibrio cholerae is a natural inhabitant of aquatic ecosystems across the planet. V. cholerae serogroups O1 and O139 are responsible for cholera outbreaks in developing countries accounting for 3-5 million infections worldwide and 28.800-130.000 deaths per year according to the World Health Organization. In contrast, V. cholerae serogroups other than O1 and O139, also designated as V. cholerae non-O1/O139 (NOVC), are not associated with epidemic cholera but can cause other illnesses that may range in severity from mild (e.g. gastroenteritis, otitis, etc.) to life-threatening (e.g. necrotizing fasciitis). Although generally neglected, NOVC-related infections are on the rise and represent one of the most striking examples of emerging human diseases linked to climate change. NOVC strains are also believed to potentially contribute to the emergence of new pathogenic strains including strains with epidemic potential as a direct consequence of genetic exchange mechanisms such as horizontal gene transfer and genetic recombination. Besides general features concerning the biology and ecology of NOVC strains and their associated diseases, this review aims to highlight the most relevant aspects related to the emergence and potential threat posed by NOVC strains under a rapidly changing environmental and climatic scenario.


Subject(s)
Climate Change , Ecosystem , Gastroenteritis/pathology , Vibrio Infections/pathology , Vibrio cholerae non-O1/pathogenicity , Disease Outbreaks , Ecology , Gastroenteritis/microbiology , Gene Transfer, Horizontal , Humans , Seawater/microbiology , Vibrio Infections/microbiology , Vibrio cholerae non-O1/classification , Vibrio cholerae non-O1/genetics
7.
Rev Chilena Infectol ; 36(3): 312-317, 2019 Jun.
Article in Spanish | MEDLINE | ID: mdl-31859750

ABSTRACT

Backgound: The virulence factors of the Vibrio cholerae non-O1, non-O139 strains are not clearly known. The strain of septicemic origin NN1 Vibrio cholerae non-O1, non-O139 was sequenced previously by the Illumina platform. A fragment of the pathogenicity island VPaI-7 of V. parahaemolyticus was detected in its genome. AIM: To detect the virulence genes vcsN2, vcsC2, vcsV2, vspD, toxR2 y vopF in Chilean strains of V. cholerae non-O1, non-O139. METHODS: A total of 9 Chilean strains of clinical origin of Vibrio cholerae non-O1, non-O139 isolated between 2006-2012 were analyzed by conventional PCR assays for type III secretion genes encoded on that island: vcsN2, vcsC2, vcsV2, vspD, toxR2 and vopF. Additionally, the presence of the virulence genes hylA and rtxA was determined. In addition, REP-PCR and ERIC-PCR assays were performed. RESULTS: most (6/9) Chilean V. cholerae non-O1, non-O139 strains contain the type III secretion genes vcsN2, vcsC2, vcsV2, vspD, toxR2 and vopF, encoded in an island of pathogenicity. In addition, all (9/9) the strains contain the virulence genes hylA and rtxA. CONCLUSION: These results strongly suggest the possibility that those strains possess an important virulence potential in humans.


Subject(s)
Bacterial Proteins/genetics , DNA-Binding Proteins/genetics , Genomic Islands/genetics , Transcription Factors/genetics , Type III Secretion Systems/genetics , Vibrio cholerae non-O1/genetics , Vibrio cholerae/genetics , Virulence Factors/genetics , Bacterial Toxins/genetics , Chile , Hemolysin Proteins/genetics , Humans , Polymerase Chain Reaction , Sequence Analysis, DNA , Vibrio cholerae/isolation & purification , Vibrio cholerae/pathogenicity , Vibrio cholerae non-O1/isolation & purification , Vibrio cholerae non-O1/pathogenicity
8.
Rev Chilena Infectol ; 36(3): 392-395, 2019 Jun.
Article in Spanish | MEDLINE | ID: mdl-31859761

ABSTRACT

We report a case of V. cholerae non-O1 / non-O139 bacteremia in an 81-year-old woman with abdominal pain, fever, vomiting, liquid stools, choluria and jaundice, while visiting a rural area without access to potable water. The identification was made by the MALDI-TOF mass spectrometry technique and subsequently the non-toxigenic non-O1 / non-139 strain was confirmed in the national reference laboratory. The molecular characterization demonstrated the absence of the cholera toxin gene (CTX), and the TCP pilus, however, presented 5 of 6 virulence genes present in an island of homologous pathogenicity named VPaI-7 of V. parahaemolyticus (vcs N2 +, vcs C2 +, vcs V2 +, toxR-, vspD +, T vopF +) and in addition it was positive for hylAy rtxA virulence genes recognized outside the island. This is the first case reported in Chile of a clinical strain of V. cholerae non-O1, non-O139 isolated from blood culture that carries in its genome a homologous segment of the pathogenicity island named VPaI-7 of V. parahaemolyticus, which codifies for a type III secretion system (TTSS) that probably contributes to his virulence.


Subject(s)
Bacteremia , Bacterial Proteins/chemistry , Vibrio cholerae non-O1/chemistry , Vibrio cholerae/chemistry , Aged, 80 and over , Bacteremia/etiology , Bacterial Proteins/isolation & purification , Cholera/complications , Cholera/microbiology , Female , Genomic Islands , Humans , Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization , Vibrio cholerae/isolation & purification , Vibrio cholerae/pathogenicity , Vibrio cholerae non-O1/isolation & purification , Vibrio cholerae non-O1/pathogenicity , Virulence
9.
Rev. chil. infectol ; 36(3): 312-317, jun. 2019. tab, graf
Article in Spanish | LILACS | ID: biblio-1013789

ABSTRACT

Resumen Introducción. Los factores de virulencia de las cepas de Vibrio cholerae no-O1, no-O139 no son claramente conocidos. La cepa de origen septicémico NN1 Vibrio cholerae no-O1, no-O139 fue secuenciada previamente mediante la plataforma Illumina, detectándose en su genoma un fragmento de la isla de patogenicidad VPaI-7 de V. parahaemolyticus. Objetivo: detectar los genes de virulencia vcsN2, vcsC2, vcsV2, vspD, toxR2 y vopF en cepas chilenas clínicas de V. cholerae no-O1, no-O139. Material y Métodos: Un total de 9 cepas chilenas de origen clínico de Vibrio cholerae no-O1, no-O139 aisladas entre 2006-2012 fueron analizadas mediante ensayos de reacción de polimerasa en cadena (RPC, en inglés PCR) convencional para los genes de secreción tipo III codificados en dicha isla: vcsN2, vcsC2, vcsV2, vspD, toxR2 y vopF. Adicionalmente se determinó la presencia de los genes de virulencia hylA y rtxA. Además, se realizaron ensayos de repetitive element palindromic PCR (REP-PCR) y Enterobacterial repetitive intergenic consensus PCR (ERIC-PCR). Resultados: la mayoría (6/9) de las cepas chilenas de V. cholerae no-O1, no-O139 contiene todos los genes de secreción tipo III vcsN2, vcsC2, vcsV2, vspD, toxR2 y vopF, codificados en una isla de patogenicidad. Además, el total de las cepas (9/9) contiene los genes de virulencia hylA y rtxA. Conclusión: Estos resultados sugieren fuertemente la posibilidad que dichas cepas posean un potencial de virulencia importante en seres humanos.


Backgound: The virulence factors of the Vibrio cholerae non-O1, non-O139 strains are not clearly known. The strain of septicemic origin NN1 Vibrio cholerae non-O1, non-O139 was sequenced previously by the Illumina platform. A fragment of the pathogenicity island VPaI-7 of V. parahaemolyticus was detected in its genome. Aim: To detect the virulence genes vcsN2, vcsC2, vcsV2, vspD, toxR2 y vopF in Chilean strains of V. cholerae non-O1, non-O139. Methods: A total of 9 Chilean strains of clinical origin of Vibrio cholerae non-O1, non-O139 isolated between 2006-2012 were analyzed by conventional PCR assays for type III secretion genes encoded on that island: vcsN2, vcsC2, vcsV2, vspD, toxR2 and vopF. Additionally, the presence of the virulence genes hylA and rtxA was determined. In addition, REP-PCR and ERIC-PCR assays were performed. Results: most (6/9) Chilean V. cholerae non-O1, non-O139 strains contain the type III secretion genes vcsN2, vcsC2, vcsV2, vspD, toxR2 and vopF, encoded in an island of pathogenicity. In addition, all (9/9) the strains contain the virulence genes hylA and rtxA. Conclusion: These results strongly suggest the possibility that those strains possess an important virulence potential in humans.


Subject(s)
Humans , Bacterial Proteins/genetics , Transcription Factors/genetics , Vibrio cholerae/genetics , Virulence Factors/genetics , Vibrio cholerae non-O1/genetics , Genomic Islands/genetics , DNA-Binding Proteins/genetics , Type III Secretion Systems/genetics , Bacterial Toxins/genetics , Vibrio cholerae/isolation & purification , Vibrio cholerae/pathogenicity , Chile , Polymerase Chain Reaction , Sequence Analysis, DNA , Vibrio cholerae non-O1/isolation & purification , Vibrio cholerae non-O1/pathogenicity , Hemolysin Proteins/genetics
10.
Rev. chil. infectol ; 36(3): 392-395, jun. 2019. tab, graf
Article in Spanish | LILACS | ID: biblio-1013799

ABSTRACT

Resumen Presentamos un caso de bacteriemia por Vibrio cholerae no-O1/ no-O139 en una mujer de 81 años con un cuadro de dolor abdominal, fiebre, vómitos, diarrea, coluria e ictericia, mientras visitaba una zona rural sin acceso a agua potable. La identificación se realizó por la técnica de espectrometría de masa MALDI-TOF, confirmándose una cepa no toxigénica no-O1/no-139. La caracterización molecular del aislado demostró la ausencia del gen de la toxina del cólera (CTX), y pilus TCP; sin embargo, presentó cinco de los seis genes de virulencia presentes en la isla de patogenicidad homóloga denominada VPaI-7 del V. parahaemolyticus (vcs N2+, vcs C2+, vcs V2+,toxR-, vspD+, T vopF+). Además, el aislado presentó los genes de virulencia hylA y rtxA. Este es el primer caso reportado en Chile de una cepa clínica de V. cholerae no-O1, no-O139 aislada de hemocultivos portador de un segmento homólogo de la isla de patogenicidad denominada VPaI-7 de V. parahaemolyticus, el cual codifica para un sistema de secreción tipo III (TTSS), que probablemente contribuye a su virulencia.


We report a case of V. cholerae non-O1 / non-O139 bacteremia in an 81-year-old woman with abdominal pain, fever, vomiting, liquid stools, choluria and jaundice, while visiting a rural area without access to potable water. The identification was made by the MALDI-TOF mass spectrometry technique and subsequently the non-toxigenic non-O1 / non-139 strain was confirmed in the national reference laboratory. The molecular characterization demonstrated the absence of the cholera toxin gene (CTX), and the TCP pilus, however, presented 5 of 6 virulence genes present in an island of homologous pathogenicity named VPaI-7 of V. parahaemolyticus (vcs N2 +, vcs C2 +, vcs V2 +, toxR-, vspD +, T vopF +) and in addition it was positive for hylAy rtxA virulence genes recognized outside the island. This is the first case reported in Chile of a clinical strain of V. cholerae non-O1, non-O139 isolated from blood culture that carries in its genome a homologous segment of the pathogenicity island named VPaI-7 of V. parahaemolyticus, which codifies for a type III secretion system (TTSS) that probably contributes to his virulence.


Subject(s)
Humans , Female , Aged, 80 and over , Bacterial Proteins/chemistry , Vibrio cholerae/chemistry , Bacteremia/etiology , Vibrio cholerae non-O1/chemistry , Bacterial Proteins/isolation & purification , Vibrio cholerae/isolation & purification , Vibrio cholerae/pathogenicity , Virulence , Cholera/complications , Cholera/microbiology , Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization , Vibrio cholerae non-O1/isolation & purification , Vibrio cholerae non-O1/pathogenicity , Genomic Islands
12.
J Appl Microbiol ; 126(4): 1265-1277, 2019 Apr.
Article in English | MEDLINE | ID: mdl-30629784

ABSTRACT

AIMS: A small outbreak of gastroenteritis in 2011 in Apalachicola Bay, FL was attributed to consumption of raw oysters carrying Vibrio cholerae serotype O75. To better understand possible health risks, V. cholerae was surveyed in oysters, fish and seawater, and results were compared to data for Vibrio vulnificus and Vibrio parahaemolyticus. METHODS AND RESULTS: Enrichment protocols were used to compare prevalence of V. cholerae (0, 48, 50%), V. vulnificus (89, 97, 100%) and V. parahaemolyticus (83, 83, 100%) in fish, seawater and oysters respectively. Compared to other species, Most probable number results indicated significantly (P < 0·001) lower abundance of V. cholerae, which was also detected more frequently at lower salinity, near-shore sites; other species were more widely distributed throughout the bay. Genes for expression (ctxA, ctxB) and acquisition (tcpA) of cholera toxin were absent in all strains by PCR, which was confirmed by whole genome sequencing; however, other putative virulence genes (toxR, rtxA, hlyA, opmU) were common. Multi-locus sequence typing revealed 78% of isolates were genetically closer to V. cholerae O75 lineage or other non-O1 serogroups than to O1 or O139 serogroups. Resistance to amoxicillin, kanamycin, streptomycin, amikacin, tetracycline and cephalothin, as well as multidrug resistance, was noted. CONCLUSIONS: Results indicated minimal human health risk posed by V. cholerae, as all isolates recovered from Apalachicola Bay did not have the genetic capacity to produce cholera toxin. Vibrio cholerae was less prevalent and abundant relative to other pathogenic Vibrio species. SIGNIFICANCE AND IMPACT OF THE STUDY: These studies provide important baseline observations for V. cholerae virulence potential regarding: (i) genetic relatedness to V. cholerae O75, (ii) antibiotic resistance and (iii) prevalence of multiple virulence genes. These data will serve as a biomonitoring tool to better understand ecosystem status and management if bacterial densities and virulence potential are altered by environmental and climatic changes over time.


Subject(s)
Bays/microbiology , Environmental Monitoring , Food Microbiology , Vibrio cholerae non-O1/genetics , Animals , Bacterial Proteins/genetics , Drug Resistance, Bacterial , Fishes/microbiology , Florida , Ostreidae/microbiology , Seafood/microbiology , Serogroup , Vibrio/genetics , Vibrio cholerae non-O1/classification , Vibrio cholerae non-O1/pathogenicity , Virulence Factors/genetics
13.
Mol Genet Genomics ; 294(2): 417-430, 2019 Apr.
Article in English | MEDLINE | ID: mdl-30488322

ABSTRACT

Vibriocholerae, which is autochthonous to estuaries worldwide, can cause human cholera that is still pandemic in developing countries. A number of V. cholerae isolates of clinical and environmental origin worldwide have been subjected to genome sequencing to address their phylogenesis and bacterial pathogenesis, however, little genome information is available for V. cholerae isolates derived from estuaries, particularly in China. In this study, we determined the complete genome sequence of V. cholerae CHN108B (non-O1/O139 serogroup) isolated from the Yangtze River Estuary, China and performed comparative genome analysis between CHN108B and other eight representative V. cholerae isolates. The 4,168,545-bp V. cholerae CHN108B genome (47.2% G+C) consists of two circular chromosomes with 3,691 predicted protein-encoding genes. It has 110 strain-specific genes, the highest number among the eight representative V. cholerae whole genomes from serogroup O1: there are seven clinical isolates linked to cholera pandemics (1937-2010) and one environmental isolate from Brazil. Various mobile genetic elements (such as insertion sequences, prophages, integrative and conjugative elements, and super-integrons) were identified in the nine V. cholerae genomes of clinical and environmental origin, indicating that the bacterium undergoes extensive genetic recombination via lateral gene transfer. Comparative genomics also revealed different virulence and antimicrobial resistance gene patterns among the V. cholerae isolates, suggesting some potential virulence factors and the rising development of resistance among pathogenic V. cholerae. Additionally, draft genome sequences of multiple V. cholerae isolates recovered from the Yangtze River Estuary were also determined, and comparative genomics revealed many genes involved in specific metabolism pathways, which are likely shaped by the unique estuary environment. These results provide additional evidence of V. cholerae genome plasticity and will facilitate better understanding of the genome evolution and pathogenesis of this severe water-borne pathogen worldwide.


Subject(s)
Cholera/genetics , Genome, Bacterial/genetics , Vibrio cholerae O1/genetics , Vibrio cholerae non-O1/genetics , Brazil , China , Cholera/microbiology , DNA Transposable Elements/genetics , Estuaries , Gene Transfer, Horizontal/genetics , Genetic Variation , Genomics , Humans , Molecular Sequence Annotation , Phylogeny , Rivers , Serogroup , Vibrio cholerae O1/pathogenicity , Vibrio cholerae non-O1/pathogenicity , Virulence/genetics
14.
PLoS One ; 12(1): e0169324, 2017.
Article in English | MEDLINE | ID: mdl-28103259

ABSTRACT

Cholera is still an important public health problem in several countries, including Thailand. In this study, a collection of clinical and environmental V. cholerae serogroup O1, O139, and non-O1/non-O139 strains originating from Thailand (1983 to 2013) was characterized to determine phenotypic and genotypic traits and to investigate the genetic relatedness. Using a combination of conventional methods and whole genome sequencing (WGS), 78 V. cholerae strains were identified. WGS was used to determine the serogroup, biotype, virulence, mobile genetic elements, and antimicrobial resistance genes using online bioinformatics tools. In addition, phenotypic antimicrobial resistance was determined by the minimal inhibitory concentration (MIC) test. The 78 V. cholerae strains belonged to the following serogroups O1: (n = 44), O139 (n = 16) and non-O1/non-O139 (n = 18). Interestingly, we found that the typical El Tor O1 strains were the major cause of clinical cholera during 1983-2000 with two Classical O1 strains detected in 2000. In 2004-2010, the El Tor variant strains revealed genotypes of the Classical biotype possessing either only ctxB or both ctxB and rstR while they harbored tcpA of the El Tor biotype. Thirty O1 and eleven O139 clinical strains carried CTXϕ (Cholera toxin) and tcpA as well four different pathogenic islands (PAIs). Beside non-O1/non-O139, the O1 environmental strains also presented chxA and Type Three Secretion System (TTSS). The in silico MultiLocus Sequence Typing (MLST) discriminated the O1 and O139 clinical strains from other serogroups and environmental strains. ST69 was dominant in the clinical strains belonging to the 7th pandemic clone. Non-O1/non-O139 and environmental strains showed various novel STs indicating genetic variation. Multidrug-resistant (MDR) strains were observed and conferred resistance to ampicillin, azithromycin, nalidixic acid, sulfamethoxazole, tetracycline, and trimethoprim and harboured variants of the SXT elements. For the first time since 1986, the presence of V. cholerae O1 Classical was reported causing cholera outbreaks in Thailand. In addition, we found that V. cholerae O1 El Tor variant and O139 were pre-dominating the pathogenic strains in Thailand. Using WGS and bioinformatic tools to analyze both historical and contemporary V. cholerae circulating in Thailand provided a more detailed understanding of the V. cholerae epidemiology, which ultimately could be applied for control measures and management of cholera in Thailand.


Subject(s)
Cholera/microbiology , Genetic Variation , Vibrio cholerae/genetics , Vibrio cholerae/isolation & purification , Cholera/epidemiology , Disease Outbreaks , Drug Resistance, Bacterial/genetics , Environmental Microbiology , Genes, Bacterial , Genomic Islands , Humans , Microbial Sensitivity Tests , Molecular Epidemiology , Multilocus Sequence Typing , Phylogeny , Serotyping , Thailand/epidemiology , Vibrio cholerae/pathogenicity , Vibrio cholerae O1/genetics , Vibrio cholerae O1/isolation & purification , Vibrio cholerae O1/pathogenicity , Vibrio cholerae O139/genetics , Vibrio cholerae O139/isolation & purification , Vibrio cholerae O139/pathogenicity , Vibrio cholerae non-O1/genetics , Vibrio cholerae non-O1/isolation & purification , Vibrio cholerae non-O1/pathogenicity , Virulence/genetics
15.
Sci Rep ; 6: 36891, 2016 11 15.
Article in English | MEDLINE | ID: mdl-27845364

ABSTRACT

Cholera is a devastating diarrhoeal disease caused by certain strains of serogroup O1/O139 Vibrio cholerae. Mobile genetic elements such as genomic islands (GIs) have been pivotal in the evolution of O1/O139 V. cholerae. Perhaps the most important GI involved in cholera disease is the V. cholerae pathogenicity island 1 (VPI-1). This GI contains the toxin-coregulated pilus (TCP) gene cluster that is necessary for colonization of the human intestine as well as being the receptor for infection by the cholera-toxin bearing CTX phage. In this study, we report a GI (designated GIVchS12) from a non-O1/O139 strain of V. cholerae that is present in the same chromosomal location as VPI-1, contains an integrase gene with 94% nucleotide and 100% protein identity to the VPI-1 integrase, and attachment (att) sites 100% identical to those found in VPI-1. However, instead of TCP and the other accessory genes present in VPI-1, GIVchS12 contains a CRISPR-Cas element and a type VI secretion system (T6SS). GIs similar to GIVchS12 were identified in other V. cholerae genomes, also containing CRISPR-Cas elements and/or T6SS's. This study highlights the diversity of GIs circulating in natural V. cholerae populations and identifies GIs with VPI-1 recombination characteristics as a propagator of CRISPR-Cas and T6SS modules.


Subject(s)
Genomic Islands , Vibrio cholerae O139/genetics , Vibrio cholerae non-O1/genetics , Virulence Factors/genetics , Bacterial Proteins/genetics , Clustered Regularly Interspaced Short Palindromic Repeats , Multigene Family , Sequence Analysis, DNA , Type VI Secretion Systems/genetics , Vibrio cholerae O139/pathogenicity , Vibrio cholerae non-O1/pathogenicity
16.
Article in Russian | MEDLINE | ID: mdl-27228670

ABSTRACT

AIM: Study N-acetyl-ß-D-glucosaminidase (chitobiase) (EC 3.2.1.30) in strains of Vibrio cholerae of O1/non-O1 serogroups of various origin, that is a component of chitinolytic complex taking into account object of isolation and epidemiologic significance of strains. MATERIALS AND METHODS: Cultures of V. cholerae O1/non-O1 serogroup strains were obtained from the museum of live culture of Rostov RIPC. Enzymatic activity analysis was carried out in Hitachi F-2500 fluorescent spectrophotometer using FL Solutions licensed software. NCBI databases were used during enzyme characteristics. RESULTS: N-acetyl-ß-D-glucosaminidase in Vcholerae O1/non-O1 serogroup strains was detected, purified by column chromatography, studied and characterized by a number of physical-chemical and biological properties. Comparative computer analysis of amino acid sequence of N-acetyl-ß-D-glucosaminidases of V. cholerae (VC2217 gene), Serratia marcescens etc. has allowed. to attribute the enzyme from V. cholerae to glycosyl-hydrolases (chitobiases) of family 20 and classify it according to enzyme nomenclature as EC 3.2.1.30. CONCLUSION: N-acetyl-ß-D-glucosaminidase in V. cholerae of O1/non-O1 serogroups of various origin and epidemiologic significance, participating in chitin utilization was studied and characterized for the first time, and its possible role in biology of cholera causative agent was shown.


Subject(s)
Acetylglucosaminidase/genetics , Cholera/enzymology , Vibrio cholerae O1/genetics , Vibrio cholerae non-O1/isolation & purification , Acetylglucosaminidase/classification , Amino Acid Sequence , Cholera/epidemiology , Cholera/microbiology , Humans , Serratia marcescens/enzymology , Vibrio cholerae O1/isolation & purification , Vibrio cholerae O1/pathogenicity , Vibrio cholerae non-O1/genetics , Vibrio cholerae non-O1/pathogenicity
17.
Infect Dis (Lond) ; 48(3): 171-6, 2016.
Article in English | MEDLINE | ID: mdl-26503346

ABSTRACT

BACKGROUND: Non-O1, non-O139 Vibrio cholerae can cause sporadic cases of gastroenteritis and extra-intestinal invasive infections, following exposure to contaminated seawater or freshwater or after consumption of raw seafood. Bacteremic infections with skin and soft tissue manifestations are uncommon and in most cases are associated with liver cirrhosis, haematologic malignancies, diabetes mellitus and other immunosuppressed conditions. METHODS: The medical literature was reviewed and we found 47 published cases of non-O1, non-O139 Vibrio cholerae bacteremic skin and soft tissue infections. A fatal case of bacteremia with bullous cellulitis in a 43-year-old patient with liver cirrhosis is described, which is the first reported in Greece. RESULTS: From January 1974 to May 2015, a total of 48 patients with non-O1, non-O139 Vibrio cholerae bacteremia with skin and soft tissue infections were reported. Males predominated. Liver cirrhosis, chronic liver disease and alcohol abuse were common comorbidities. The soft tissue lesions most commonly described were localised cellulitis, with or without bullous and haemorrhagic lesions (66.7%), while necrotising fasciitis was more rare (29.2%). Of the 48 patients with non-O1, non-O139 V. cholerae bacteremic skin and soft tissue infections, 20 (41.7%) died despite treatment. CONCLUSION: Although rarely encountered, non-O1, non-O139 Vibrio cholerae should be included in the differential diagnosis of bacteremic skin and soft tissue infections in patients with underlying illnesses and epidemiologic risk factors. Timely and appropriate antibiotic and surgical treatments are important in the management of the infection.


Subject(s)
Bacteremia/microbiology , Cellulitis/microbiology , Skin Diseases, Bacterial/microbiology , Soft Tissue Infections/microbiology , Vibrio Infections/microbiology , Vibrio cholerae non-O1/pathogenicity , Adult , Anti-Bacterial Agents/therapeutic use , Bacteremia/drug therapy , Bacteremia/epidemiology , Cellulitis/diagnosis , Diabetes Mellitus/epidemiology , Fatal Outcome , Female , Hematologic Neoplasms/epidemiology , Humans , Immune Tolerance , Liver Cirrhosis/epidemiology , Male , Multiple Organ Failure/epidemiology , Risk Factors , Skin Diseases, Bacterial/drug therapy , Skin Diseases, Bacterial/epidemiology , Soft Tissue Infections/drug therapy , Soft Tissue Infections/epidemiology , Vibrio Infections/drug therapy , Vibrio Infections/epidemiology , Vibrio cholerae non-O1/genetics , Vibrio cholerae non-O1/isolation & purification
18.
Southeast Asian J Trop Med Public Health ; 45(6): 1365-75, 2014 Nov.
Article in English | MEDLINE | ID: mdl-26466422

ABSTRACT

Vibrio cholerae non-O1/non-O139 is capable of producing sporadic outbreaks of cholera-like diarrhea; however, the pathogenic mechanisms of this bacterium remain unclear. The objectives of this study were to: 1) compare the apoptosis induction and cytotoxicity between hlyA-positive and hlyA-negative strains of V. cholerae non-O1/non-O139; 2) clarify the molecular mechanisms by which these strains induce apoptosis; and 3) compare clinical and environmental V. cholerae non-O1/non-O139 isolates with respect to cytotoxicity and ability to induce apoptosis. Using cytotoxicity and apoptosis assays, it was shown that hlyA-positive strains of V. cholerae non-O1/non-O139 had significantly higher cytotoxic activity (70.6%) and levels of apoptosis induction (59.6%) than hlyA- negative strains (37.0% and 37.5%, respectively). Western blot analyses revealed that hlyA-positive strains had significantly increased expression of Bax; active caspase-3 and -9; and significantly decreased expression of NF-κB and Bcl-2 relative to hlyA-negative strains. Expression of BID did not differ significantly between hlyA-positive and negative strains. The truncated BID was not found, indicating that V. cholerae non-O1/non-O139 induces apoptosis through a mitochondria- dependent apoptosis pathway and not an extrinsic pathway. V. cholerae non-O1/ non-O139 isolated from clinical sources exhibited significantly higher cytotoxic activity (79%) and levels of apoptosis induction (65.2%) than bacteria isolated from environmental sources (63% and 54.6%, respectively), suggesting that the clini- cal isolates may have other virulence-associated genes besides hlyA. Our results indicate that hlyA products play a role in cytotoxicity and apoptosis induction and that a mitochondria-dependent apoptosis pathway is involved.


Subject(s)
Bacterial Proteins/physiology , Hemolysin Proteins/physiology , Vibrio cholerae non-O1/physiology , Animals , Apoptosis/physiology , Bacterial Proteins/genetics , CHO Cells , Cell Survival/physiology , Cricetinae , Cricetulus , Hemolysin Proteins/genetics , Host-Pathogen Interactions , Vibrio cholerae non-O1/genetics , Vibrio cholerae non-O1/pathogenicity
19.
Gastroenterol. hepatol. (Ed. impr.) ; 36(5): 309-310, mayo 2013.
Article in Spanish | IBECS | ID: ibc-112377

ABSTRACT

La bacteriemia por Vibrio cholerae no-O1 y no-O139 es una enfermedad rara y potencialmente mortal. Presentamos un caso de bacteriemia por Vibrio cholerae no-O1 y no-O139 en un hombre portugués con cirrosis debida a Hepatitis C que fue ingresado por diarrea aguda tras el consumo de gambas. No había viajado recientemente. Según nuestro conocimiento, este es el primer caso de bacteriemia por Vibrio cholerae no O1 y no O139 acaecido en Portugal (AU)


Bacteremia due to Vibrio cholerae non-O1 and non-O139 is a rare condition and potentially fatal. We report a case of bacteremia due to V. cholerae non-O1 and non-O139 in a Portuguese male with Hepatitis C cirrhosis, admitted due to acute diarrhea, after consuming shrimp. He had no recent travels. To our knowledge, this is the first reported case of bacteremia due to V. cholerae non-O1 and non-O139 in Portugal (AU)


Subject(s)
Humans , Male , Adult , Bacteremia/etiology , Vibrio cholerae/pathogenicity , Cholera/complications , Vibrio cholerae non-O1/pathogenicity , Emigrants and Immigrants , Risk Factors , Liver Cirrhosis/complications
20.
J Med Microbiol ; 62(Pt 6): 917-921, 2013 Jun.
Article in English | MEDLINE | ID: mdl-23449872

ABSTRACT

A 49-year-old male with underlying liver disease presented with fever and signs of sepsis. Non-O1/non-O139 Vibrio cholerae was isolated from his blood culture, which was positive for the hlyA and toxR genes. We report this fatal case of non-O1/non-O139 V. cholera sepsis and review the literature on non-O1/non-O139 V. cholerae sepsis in patients with chronic liver disease.


Subject(s)
Cholera/complications , Liver Diseases/complications , Sepsis/complications , Vibrio cholerae non-O1/pathogenicity , Cholera/microbiology , Chronic Disease , Fatal Outcome , Humans , Liver Diseases/microbiology , Male , Middle Aged , Molecular Sequence Data , RNA, Ribosomal, 16S/genetics , Sepsis/microbiology , Sequence Analysis, DNA , Vibrio cholerae non-O1/classification , Vibrio cholerae non-O1/genetics , Vibrio cholerae non-O1/isolation & purification
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