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1.
FEBS J ; 289(15): 4564-4579, 2022 08.
Article in English | MEDLINE | ID: mdl-35113495

ABSTRACT

Vitamin K epoxide reductases (VKORs) are a large family of integral membrane enzymes found from bacteria to humans. Human VKOR, specific target of warfarin, has both the epoxide and quinone reductase activity to maintain the vitamin K cycle. Bacterial VKOR homologs, however, are insensitive to warfarin inhibition and are quinone reductases incapable of epoxide reduction. What affords the epoxide reductase activity in human VKOR remains unknown. Here, we show that a representative bacterial VKOR homolog can be converted to an epoxide reductase that is also inhibitable by warfarin. To generate this new activity, we first substituted several regions surrounding the active site of bacterial VKOR by those from human VKOR based on comparison of their crystal structures. Subsequent systematic substitutions narrowed down to merely eight residues, with the addition of a membrane anchor domain, that are responsible for the epoxide reductase activity. Substitutions corresponding to N80 and Y139 in human VKOR provide strong hydrogen bonding interactions to facilitate the epoxide reduction. The rest of six substitutions increase the size and change the shape of the substrate-binding pocket, and the membrane anchor domain stabilizes this pocket while allowing certain flexibility for optimal binding of the epoxide substrate. Overall, our study reveals the structural features of the epoxide reductase activity carried out by a subset of VKOR family in the membrane environment.


Subject(s)
Oxidoreductases , Warfarin , Epoxy Compounds , Humans , Oxidoreductases/genetics , Vitamin K 1/analogs & derivatives , Vitamin K Epoxide Reductases/chemistry , Vitamin K Epoxide Reductases/genetics , Warfarin/chemistry , Warfarin/pharmacology
2.
Am J Epidemiol ; 190(10): 2029-2041, 2021 10 01.
Article in English | MEDLINE | ID: mdl-33949658

ABSTRACT

No epidemiologic studies have been conducted to assess the association of intake of dietary vitamin K with the risk of pancreatic cancer. We used prospective data from the Prostate, Lung, Colorectal, and Ovarian Cancer Screening Trial between 1993 and 2009 to fill this gap. A total of 101,695 subjects were identified. Dietary intakes of phylloquinone (vitamin K1), menaquinones (vitamin K2), and dihydrophylloquinone (dihydrovitamin K1) were assessed using a food frequency questionnaire. Cox regression was applied to calculate hazard ratios and 95% confidence intervals. During a mean follow-up of 8.86 years (900,744.57 person-years), 361 cases of pancreatic cancer were documented. In the fully adjusted model, dietary intakes of phylloquinone (for quartile 4 vs. quartile 1, hazard ratio (HR) = 0.57, 95% confidence interval (CI): 0.39, 0.83; P for trend = 0.002) and dihydrophylloquinone (for quartile 4 vs. quartile 1, HR = 0.59; 95% CI: 0.41, 0.85; P for trend = 0.006), but not menaquinones (for quartile 4 vs. quartile 1, HR = 0.93; 95% CI: 0.65, 1.33; P for trend = 0.816), were found to be inversely associated with the risk of pancreatic cancer in a nonlinear dose-response manner (all P values for nonlinearity < 0.05), and this was not modified by predefined stratification factors and remained in sensitivity analyses. In conclusion, dietary intakes of phylloquinone and dihydrophylloquinone, but not menaquinones, confer a lower risk of pancreatic cancer. Future studies should confirm our findings.


Subject(s)
Diet/statistics & numerical data , Pancreatic Neoplasms/epidemiology , Vitamin K 1/analogs & derivatives , Vitamin K 1/analysis , Vitamin K 2/analysis , Aged , Clinical Trials as Topic , Diet/adverse effects , Diet Surveys , Female , Humans , Male , Middle Aged , Nutritional Status , Pancreatic Neoplasms/etiology , Proportional Hazards Models , Prospective Studies , Risk Factors , United States/epidemiology
4.
Clin Infect Dis ; 73(11): e4039-e4046, 2021 12 06.
Article in English | MEDLINE | ID: mdl-32852539

ABSTRACT

BACKGROUND: Respiratory failure and thromboembolism are frequent in severe acute respiratory syndrome coronavirus 2-infected patients. Vitamin K activates both hepatic coagulation factors and extrahepatic endothelial anticoagulant protein S, required for thrombosis prevention. In times of vitamin K insufficiency, hepatic procoagulant factors are preferentially activated over extrahepatic proteins. Vitamin K also activates matrix Gla protein (MGP), which protects against pulmonary and vascular elastic fiber damage. We hypothesized that vitamin K may be implicated in coronavirus disease 2019 (COVID-19), linking pulmonary and thromboembolic disease. METHODS: A total of 135 hospitalized COVID-19 patients were compared with 184 historic controls. Inactive vitamin K-dependent MGP (desphospho-uncarboxylated [dp-uc] MGP) and prothrombin (PIVKA-II) were measured inversely related to extrahepatic and hepatic vitamin K status, respectively. Desmosine was measured to quantify the rate of elastic fiber degradation. Arterial calcification severity was assessed using computed tomography. RESULTS: dp-ucMGP was elevated in COVID-19 patients compared with controls (P < .001), with even higher dp-ucMGP in patients with poor outcomes (P < .001). PIVKA-II was normal in 82.1% of patients. dp-ucMGP was correlated with desmosine (P < .001) and with coronary artery (P = .002) and thoracic aortic (P < .001) calcification scores. CONCLUSIONS: dp-ucMGP was severely increased in COVID-19 patients, indicating extrahepatic vitamin K insufficiency, which was related to poor outcome; hepatic procoagulant factor II remained unaffected. These data suggest pneumonia-induced extrahepatic vitamin K depletion leading to accelerated elastic fiber damage and thrombosis in severe COVID-19 due to impaired activation of MGP and endothelial protein S, respectively.


Subject(s)
COVID-19 , Biomarkers , Humans , Risk Factors , SARS-CoV-2 , Vitamin K 1/analogs & derivatives
5.
J Biol Chem ; 296: 100145, 2021.
Article in English | MEDLINE | ID: mdl-33273012

ABSTRACT

Vitamin K epoxide reductases (VKORs) constitute a major family of integral membrane thiol oxidoreductases. In humans, VKOR sustains blood coagulation and bone mineralization through the vitamin K cycle. Previous chemical models assumed that the catalysis of human VKOR (hVKOR) starts from a fully reduced active site. This state, however, constitutes only a minor cellular fraction (5.6%). Thus, the mechanism whereby hVKOR catalysis is carried out in the cellular environment remains largely unknown. Here we use quantitative mass spectrometry (MS) and electrophoretic mobility analyses to show that KO likely forms a covalent complex with a cysteine mutant mimicking hVKOR in a partially oxidized state. Trapping of this potential reaction intermediate suggests that the partially oxidized state is catalytically active in cells. To investigate this activity, we analyze the correlation between the cellular activity and the cellular cysteine status of hVKOR. We find that the partially oxidized hVKOR has considerably lower activity than hVKOR with a fully reduced active site. Although there are more partially oxidized hVKOR than fully reduced hVKOR in cells, these two reactive states contribute about equally to the overall hVKOR activity, and hVKOR catalysis can initiate from either of these states. Overall, the combination of MS quantification and biochemical analyses reveals the catalytic mechanism of this integral membrane enzyme in a cellular environment. Furthermore, these results implicate how hVKOR is inhibited by warfarin, one of the most commonly prescribed drugs.


Subject(s)
Vitamin K 1/analogs & derivatives , Vitamin K Epoxide Reductases/metabolism , Catalysis , Catalytic Domain , Cells, Cultured , Humans , Mutation , Protein Conformation , Vitamin K 1/chemistry , Vitamin K 1/metabolism , Vitamin K Epoxide Reductases/chemistry , Vitamin K Epoxide Reductases/genetics
6.
Biochemistry ; 59(13): 1351-1360, 2020 04 07.
Article in English | MEDLINE | ID: mdl-32182040

ABSTRACT

The vitamin K epoxide reductase (VKORC1) enzyme is of primary importance in many physiological processes, i.e., blood coagulation, energy metabolism, and arterial calcification prevention, due to its role in the vitamin K cycle. Indeed, VKORC1 catalyzes reduction of vitamin K epoxide to quinone and then to hydroquinone. However, the three-dimensional VKORC1 structure remains experimentally undetermined, because of the endoplasmic reticulum membrane location of this enzyme. Here we present a molecular modeling investigation of the VKORC1 enzymatic site structure and function, supported by in vitro enzymatic assays. Four VKORC1 mutants were designed in silico (F55G, F55Y, N80G, and F83G) based on a previous study that identified residues F55, N80, and F83 as being crucial for vitamin K epoxide binding. F55G, N80G, and F83G nonconservative mutants were all predicted to be inactive by molecular modeling analyses. However, the F55Y conservative mutant was expected to be active compared to wild-type VKORC1. In vitro enzymatic assays performed on recombinant proteins assessed our molecular modeling hypotheses and led us to describe the role of accurate VKORC1 active site residues with respect to VKORC1. Residues F55, N80, and F83 appeared to act in a concerted manner to keep vitamin K epoxide close to the C135 catalytic residue. Residues F55 and N80 prevent naphthoquinone head rotation away from the active site, assisted by residue F83 that prevents vitamin K from sliding outside the enzymatic pocket, through hydrophobic tail stabilization. Our results thus highlighted the specific functions of VKORC1 catalytic pocket residues and evidenced the ability of our structural model to predict biological effects of VKORC1 mutations.


Subject(s)
Vitamin K 1/analogs & derivatives , Vitamin K Epoxide Reductases/chemistry , Amino Acid Motifs , Binding Sites , Catalytic Domain , Humans , Models, Molecular , Vitamin K 1/chemistry , Vitamin K 1/metabolism , Vitamin K Epoxide Reductases/genetics , Vitamin K Epoxide Reductases/metabolism
7.
Int J Pharm ; 579: 119136, 2020 Apr 15.
Article in English | MEDLINE | ID: mdl-32057891

ABSTRACT

Due to the vitamin K1 sensitizing potential, the oxidized-isoform of vitamin K1 (vitamin K1 oxide, VKO), has been recently used for treating laser-induced purpura and hyperpigmentation in cosmetics. The objective of this study was to formulate VKO in nanoliposomes by using Box-Behnken experimental design to obtain an optimized formula with higher efficiency. The ratio of phospholipid to cholesterol (PC/CHO ratio), VKO concentration and sonication time in low, medium, and high levels were independent variables, while the percent of VKO entrapment efficiency (EE%) and vesicle size were selected as dependent variables. Optimum desirability was identified and an optimized formulation was prepared, characterized, and selected for in vitro VKO release and ex vivo skin permeation. The PC/CHO ratio showed the greatest effect on both responses (P < 0.0001). This effect was positive on EE%, while a negative effect was shown on vesicle size. The optimized formulation showed controlled drug release of 79.2% through a silicon membrane, and achieved flux of 327.36 ± 22.1 µg/cm2 through human skin after 24 h. So, nanoliposomes were proven as a suitable drug delivery system for topical delivery of VKO.


Subject(s)
Drug Compounding/methods , Nanoparticles/chemistry , Vitamin K 1/analogs & derivatives , Administration, Cutaneous , Chemistry, Pharmaceutical , Cholesterol/chemistry , Cosmetic Techniques/adverse effects , Cosmetic Techniques/instrumentation , Delayed-Action Preparations/administration & dosage , Delayed-Action Preparations/pharmacokinetics , Drug Liberation , Humans , Hyperpigmentation/drug therapy , Hyperpigmentation/etiology , Lasers/adverse effects , Liposomes , Particle Size , Phospholipids/chemistry , Purpura/drug therapy , Purpura/etiology , Skin/metabolism , Skin/radiation effects , Skin Absorption , Vitamin K 1/administration & dosage , Vitamin K 1/pharmacokinetics
9.
J Pharm Biomed Anal ; 159: 82-91, 2018 Sep 10.
Article in English | MEDLINE | ID: mdl-29980023

ABSTRACT

Warfarin exerts its anticoagulation activity by blocking the vitamin K-epoxide cycle. A quantitative understanding of how warfarin and related genes interact with the vitamin K-epoxide cycle and the associated change of coagulation activity in the human body may help study the pharmacodynamics of warfarin. The plasma concentration of vitamin K1 (VK1) and vitamin K1 2,3-epoxide (VK1O) could reflect the status of vitamin K-epoxide cycle. However, their determination is a challenging task due to their extremely low concentrations in human plasma and the severe interferences caused by co-extracted lipids. In this study, we developed an LC-APCI-MS/MS method for the simultaneous determination of VK1 and VK1O in human plasma using stable deuterium-labeled vitamin K1 (vitamin K1-d7) as the internal standard (IS). Plasma samples were prepared through protein denaturation followed by one-step liquid extraction with cyclohexane. Chromatographic separation of analytes from isobaric interferences and endogenous ion suppressor was performed on a Synergi Hydro-RP column (150 mm × 4.6 mm, 4 µm) under the reversed-phase condition with isocratic elution. The selective reaction monitoring (SRM) transitions were chosen as m/z = 451.5→187.3 for VK1, m/z = 467.5→161.2 for VK1O, and m/z = 458.6→194.3 for IS in APCI positive mode. The assay was linear in the range of 100-10,000 pg/mL for the two analytes and achieved considerable extraction recoveries (87.8-93.3%, 91.0-96.9%, and 92.0% for VK1, VK1O, and IS, respectively), negligible matrix effects (93.6-96.0%, 96.3-100.1%, and 95.5%), and high selectivity with a small sample volume requirement (0.2 mL) and short run time (15 min). The validated method was successfully applied in a clinical pharmacodynamic study of warfarin, and the clotting activity was found to be negatively correlated with the plasma concentration ratio of VK1O to VK1.


Subject(s)
Anticoagulants/pharmacokinetics , High-Throughput Screening Assays/methods , Tandem Mass Spectrometry/methods , Vitamin K 1/analogs & derivatives , Vitamin K 1/blood , Warfarin/pharmacokinetics , Chromatography, High Pressure Liquid/methods , Chromatography, High Pressure Liquid/standards , Chromatography, Liquid/methods , Chromatography, Liquid/standards , High-Throughput Screening Assays/standards , Humans , Tandem Mass Spectrometry/standards
10.
Nutrients ; 10(8)2018 Jul 26.
Article in English | MEDLINE | ID: mdl-30050002

ABSTRACT

Vitamin K is an essential nutrient involved in the regulation of blood clotting and tissue mineralization. Vitamin K oxidoreductase (VKORC1) converts vitamin K epoxide into reduced vitamin K, which acts as the co-factor for the γ-carboxylation of several proteins, including coagulation factors produced by the liver. VKORC1 is also the pharmacological target of warfarin, a widely used anticoagulant. Vertebrates possess a VKORC1 paralog, VKORC1-like 1 (VKORC1L1), but until very recently, the importance of VKORC1L1 for protein γ-carboxylation and hemostasis in vivo was not clear. Here, we first review the current knowledge on the structure, function and expression pattern of VKORC1L1, including recent data establishing that, in the absence of VKORC1, VKORC1L1 can support vitamin K-dependent carboxylation in the liver during the pre- and perinatal periods in vivo. We then provide original data showing that the partial redundancy between VKORC1 and VKORC1L1 also exists in bone around birth. Recent studies indicate that, in vitro and in cell culture models, VKORC1L1 is less sensitive to warfarin than VKORC1. Genetic evidence is presented here, which supports the notion that VKORC1L1 is not the warfarin-resistant vitamin K quinone reductase present in the liver. In summary, although the exact physiological function of VKORC1L1 remains elusive, the latest findings clearly established that this enzyme is a vitamin K oxidoreductase, which can support γ-carboxylation in vivo.


Subject(s)
Blood Coagulation , Carboxylic Acids/metabolism , Liver/enzymology , Vitamin K 1/analogs & derivatives , Vitamin K Epoxide Reductases/metabolism , Animals , Anticoagulants/pharmacology , Blood Coagulation/drug effects , Evolution, Molecular , Gene Expression Regulation, Developmental , Gene Expression Regulation, Enzymologic , Humans , Oxidation-Reduction , Protein Conformation , Protein Processing, Post-Translational , Structure-Activity Relationship , Vitamin K 1/metabolism , Vitamin K Epoxide Reductases/antagonists & inhibitors , Vitamin K Epoxide Reductases/chemistry , Vitamin K Epoxide Reductases/genetics , Warfarin/pharmacology
11.
Blood ; 131(25): 2826-2835, 2018 06 21.
Article in English | MEDLINE | ID: mdl-29592891

ABSTRACT

The anticoagulant warfarin inhibits the vitamin K oxidoreductase (VKORC1), which generates vitamin K hydroquinone (KH2) required for the carboxylation and consequent activation of vitamin K-dependent (VKD) proteins. VKORC1 produces KH2 in 2 reactions: reduction of vitamin K epoxide (KO) to quinone (K), and then KH2 Our dissection of full reduction vs the individual reactions revealed a surprising mechanism of warfarin inhibition. Warfarin inhibition of KO to K reduction and carboxylation that requires full reduction were compared in wild-type VKORC1 or mutants (Y139H, Y139F) that cause warfarin resistance. Carboxylation was much more strongly inhibited (∼400-fold) than KO reduction (two- to threefold). The K to KH2 reaction was analyzed using low K concentrations that result from inhibition of KO to K. Carboxylation that required only K to KH2 reduction was inhibited much less than observed with the KO substrate that requires full VKORC1 reduction (eg, 2.5-fold vs 70-fold, respectively, in cells expressing wild-type VKORC1 and factor IX). The results indicate that warfarin uncouples the 2 reactions that fully reduce KO. Uncoupling was revealed because a second activity, a warfarin-resistant quinone reductase, was not present. In contrast, 293 cells expressing factor IX and this reductase activity showed much less inhibition of carboxylation. This activity therefore appears to cooperate with VKORC1 to accomplish full KO reduction. Cooperation during warfarin therapy would have significant consequences, as VKD proteins function in numerous physiologies in many tissues, but may be poorly carboxylated and dysfunctional if the second activity is not ubiquitously expressed similar to VKORC1.


Subject(s)
Anticoagulants/metabolism , Vitamin K Epoxide Reductases/metabolism , Vitamin K/metabolism , Warfarin/metabolism , Animals , Anticoagulants/pharmacology , Cell Line , Cricetinae , Drug Resistance , Humans , Oxidation-Reduction/drug effects , Point Mutation , Vitamin K 1/analogs & derivatives , Vitamin K 1/metabolism , Vitamin K Epoxide Reductases/antagonists & inhibitors , Vitamin K Epoxide Reductases/genetics , Warfarin/pharmacology
12.
Cochrane Database Syst Rev ; 2: CD008342, 2018 02 05.
Article in English | MEDLINE | ID: mdl-29401369

ABSTRACT

BACKGROUND: Vitamin K is necessary for the synthesis of coagulation factors. Term infants, especially those who are exclusively breast fed, are deficient in vitamin K and consequently may have vitamin K deficiency bleeding (VKDB). Preterm infants are potentially at greater risk for VKDB because of delayed feeding and subsequent delay in the colonization of their gastrointestinal system with vitamin K producing microflora, as well as immature hepatic and hemostatic function.  OBJECTIVES: To determine the effect of vitamin K prophylaxis in the prevention of vitamin K deficiency bleeding (VKDB) in preterm infants. SEARCH METHODS: We used the standard search strategy of Cochrane Neonatal to search the Cochrane Central Register of Controlled Trials (CENTRAL 2016, Issue 11), MEDLINE via PubMed (1966 to 5 December 2016), Embase (1980 to 5 December 2016), and CINAHL (1982 to 5 December 2016). We also searched clinical trials databases, conference proceedings, and the reference lists of retrieved articles. SELECTION CRITERIA: Randomized controlled trials (RCTs) or quasi-RCTs of any preparation of vitamin K given to preterm infants. DATA COLLECTION AND ANALYSIS: We evaluated potential studies and extracted data in accordance with the recommendations of Cochrane Neonatal. MAIN RESULTS: We did not identify any eligible studies that compared vitamin K to no treatment.One study compared intravenous (IV) to intramuscular (IM) administration of vitamin K and compared various dosages of vitamin K. Three different prophylactic regimes of vitamin K (0.5 mg IM, 0.2 mg vitamin K1, or 0.2 mg IV) were given to infants less than 32 weeks' gestation. Given that only one small study met the inclusion criteria, we assessed the quality of the evidence for the outcomes evaluated as low.Intramuscular versus intravenousThere was no statistically significant difference in vitamin K levels in the 0.2 mg IV group when compared to the infants that received either 0.2 or 0.5 mg vitamin K IM (control) on day 5. By day 25, vitamin K1 levels had declined in all of the groups, but infants who received 0.5 mg vitamin K IM had higher levels of vitamin K1 than either the 0.2 mg IV group or the 0.2 mg IM group.Vitamin K1 2,3-epoxide (vitamin K1O) levels in the infants that received 0.2 mg IV were not statistically different from those in the control group on day 5 or 25 of the study. All of the infants had normal or supraphysiologic levels of vitamin K1 concentrations and either no detectable or insignificant amounts of prothrombin induced by vitamin K absence-II (PIVKA II).Dosage comparisonsDay 5 vitamin K1 levels and vitamin K1O levels were significantly lower in the 0.2 mg IM group when compared to the 0.5 mg IM group. On day 25, vitamin K1O levels and vitamin K1 levels in the 0.2 mg IM group and the 0.5 mg IM group were not significantly different. Presence of PIVKA II proteins in the 0.2 mg IM group versus the 0.5 mg IM group was not significantly different at day 5 or 25 of the study. AUTHORS' CONCLUSIONS: Preterm infants have low levels of vitamin K and develop detectable PIVKA proteins during the first week of life. Despite being at risk for VKDB, there are no studies comparing vitamin K versus non-treatment and few studies that address potential dosing strategies for effective treatment. Dosage studies suggest that we are currently giving doses of vitamin K to preterm infants that lead to supraphysiologic levels. Because of current uncertainty, clinicians will have to extrapolate data from term infants to preterm infants. Since there is no available evidence that vitamin K is harmful or ineffective and since vitamin K is an inexpensive drug, it seems prudent to follow the recommendations of expert bodies and give vitamin K to preterm infants. However, further research on appropriate dose and route of administration is warranted.


Subject(s)
Vitamin K Deficiency Bleeding/prevention & control , Vitamin K/administration & dosage , Vitamins/administration & dosage , Biomarkers/metabolism , Humans , Infant , Infant Mortality , Infant, Newborn , Infant, Premature , Injections, Intramuscular , Injections, Intravenous , Liver/metabolism , Protein Precursors/metabolism , Prothrombin/analysis , Prothrombin/metabolism , Vitamin K/blood , Vitamin K 1/analogs & derivatives , Vitamin K 1/blood
13.
Biosci Biotechnol Biochem ; 81(12): 2244-2252, 2017 Dec.
Article in English | MEDLINE | ID: mdl-29098938

ABSTRACT

A unique electron-accepting analog of vitamin K1 found in photosystem I in several species of oxygenic photosynthetic microorganisms was confirmed to be 5'-hydroxyphylloquinone (1) through stereo-uncontrolled synthesis. Furthermore, the stereochemistry of 1 obtained from Synechococcus sp. PCC 7942 was assigned to be 5'S using proline-catalyzed stereocontrolled reactions.


Subject(s)
Photosystem I Protein Complex/metabolism , Vitamin K 1/analogs & derivatives , Electron Transport , Stereoisomerism , Synechococcus/metabolism , Vitamin K 1/chemistry , Vitamin K 1/metabolism
15.
Methods Enzymol ; 584: 349-394, 2017.
Article in English | MEDLINE | ID: mdl-28065270

ABSTRACT

Vitamin K-dependent carboxylation, an essential posttranslational modification catalyzed by gamma-glutamyl carboxylase, is required for the biological functions of proteins that control blood coagulation, vascular calcification, bone metabolism, and other important physiological processes. Concomitant with carboxylation, reduced vitamin K (KH2) is oxidized to vitamin K epoxide (KO). KO must be recycled back to KH2 by the enzymes vitamin K epoxide reductase and vitamin K reductase in a pathway known as the vitamin K cycle. Our current knowledge about the enzymes of the vitamin K cycle is mainly based on in vitro studies of each individual enzymes under artificial conditions, which are of limited usefulness in understanding how the complex carboxylation process is carried out in the physiological environment. In this chapter, we review the current in vitro activity assays for vitamin K cycle enzymes. We describe the rationale, establishment, and application of cell-based assays for the functional study of these enzymes in the native cellular milieu. In these cell-based assays, different vitamin K-dependent proteins were designed and stably expressed in mammalian cells as reporter proteins to accommodate the readily used enzyme-linked immunosorbent assay for carboxylation efficiency evaluation. Additionally, recently emerged genome-editing techniques TALENs and CRISPR-Cas9 were used to knock out the endogenous enzymes in the reporter cell lines to eliminate the background. These cell-based assays are easy to scale up for high-throughput screening of inhibitors of vitamin K cycle enzymes and have been successfully used to clarify the genotypes and their clinical phenotypes of enzymes of the vitamin K cycle.


Subject(s)
Enzyme Assays/methods , NAD(P)H Dehydrogenase (Quinone)/chemistry , Vitamin K Epoxide Reductases/chemistry , Vitamin K/chemistry , Animals , Enzyme-Linked Immunosorbent Assay/methods , Humans , Protein Processing, Post-Translational/genetics , Vitamin K/antagonists & inhibitors , Vitamin K/metabolism , Vitamin K 1/analogs & derivatives , Vitamin K 1/chemistry
16.
Nat Struct Mol Biol ; 24(1): 77-85, 2017 01.
Article in English | MEDLINE | ID: mdl-27941861

ABSTRACT

Vitamin K epoxide reductase (VKOR) catalyzes the reduction of vitamin K quinone and vitamin K 2,3-epoxide, a process essential to sustain γ-carboxylation of vitamin K-dependent proteins. VKOR is also a therapeutic target of warfarin, a treatment for thrombotic disorders. However, the structural and functional basis of vitamin K reduction and the antagonism of warfarin inhibition remain elusive. Here, we identified putative binding sites of both K vitamers and warfarin on human VKOR. The predicted warfarin-binding site was verified by shifted dose-response curves of specified mutated residues. We used CRISPR-Cas9-engineered HEK 293T cells to assess the vitamin K quinone and vitamin K 2,3-epoxide reductase activities of VKOR variants to characterize the vitamin K naphthoquinone head- and isoprenoid side chain-binding regions. Our results challenge the prevailing concept of noncompetitive warfarin inhibition because K vitamers and warfarin share binding sites on VKOR that include Phe55, a key residue binding either the substrate or inhibitor.


Subject(s)
Vitamin K Epoxide Reductases/chemistry , Warfarin/chemistry , Biocatalysis , Catalytic Domain , Drug Resistance , HEK293 Cells , Humans , Molecular Docking Simulation , Oxidation-Reduction , Phenylalanine/chemistry , Protein Binding , Protein Conformation, alpha-Helical , Vitamin K 1/analogs & derivatives , Vitamin K 1/chemistry , Vitamin K 2/chemistry , Vitamin K Epoxide Reductases/antagonists & inhibitors
17.
Nat Struct Mol Biol ; 24(1): 69-76, 2017 01.
Article in English | MEDLINE | ID: mdl-27918545

ABSTRACT

Although warfarin is the most widely used anticoagulant worldwide, the mechanism by which warfarin inhibits its target, human vitamin K epoxide reductase (hVKOR), remains unclear. Here we show that warfarin blocks a dynamic electron-transfer process in hVKOR. A major fraction of cellular hVKOR is in an intermediate redox state containing a Cys51-Cys132 disulfide, a characteristic accommodated by a four-transmembrane-helix structure of hVKOR. Warfarin selectively inhibits this major cellular form of hVKOR, whereas disruption of the Cys51-Cys132 disulfide impairs warfarin binding and causes warfarin resistance. Relying on binding interactions identified by cysteine alkylation footprinting and mass spectrometry coupled with mutagenesis analysis, we conducted structure simulations, which revealed a closed warfarin-binding pocket stabilized by the Cys51-Cys132 linkage. Understanding the selective warfarin inhibition of a specific redox state of hVKOR should enable the rational design of drugs that exploit the redox chemistry and associated conformational changes in hVKOR.


Subject(s)
Vitamin K Epoxide Reductases/chemistry , Warfarin/chemistry , Biocatalysis , Catalytic Domain , HEK293 Cells , Humans , Molecular Docking Simulation , Oxidation-Reduction , Protein Binding , Vitamin K 1/analogs & derivatives , Vitamin K 1/chemistry , Vitamin K 2/chemistry , Vitamin K Epoxide Reductases/antagonists & inhibitors
18.
Plant J ; 89(1): 141-154, 2017 01.
Article in English | MEDLINE | ID: mdl-27612091

ABSTRACT

Phylloquinone (PhQ), or vitamin K1 , is an essential electron carrier (A1 ) in photosystem I (PSI). In the green alga Chlamydomonas reinhardtii, which is a model organism for the study of photosynthesis, a detailed characterization of the pathway is missing with only one mutant deficient for MEND having been analyzed. We took advantage of the fact that a double reduction of plastoquinone occurs in anoxia in the A1 site in the mend mutant, interrupting photosynthetic electron transfer, to isolate four new phylloquinone-deficient mutants impaired in MENA, MENB, MENC (PHYLLO) and MENE. Compared with the wild type and complemented strains for MENB and MENE, the four men mutants grow slowly in low light and are sensitive to high light. When grown in low light they show a reduced photosynthetic electron transfer due to a specific decrease of PSI. Upon exposure to high light for a few hours, PSI becomes almost completely inactive, which leads in turn to lack of phototrophic growth. Loss of PhQ also fully prevents reactivation of photosynthesis after dark anoxia acclimation. In silico analyses allowed us to propose a PhQ biosynthesis pathway in Chlamydomonas that involves 11 enzymatic steps from chorismate located in the chloroplast and in the peroxisome.


Subject(s)
Bacterial Proteins/genetics , Chlamydomonas reinhardtii/genetics , Mutation , Vitamin K 1/analogs & derivatives , Alkyl and Aryl Transferases/genetics , Alkyl and Aryl Transferases/isolation & purification , Alkyl and Aryl Transferases/metabolism , Amino Acid Sequence , Bacterial Proteins/isolation & purification , Bacterial Proteins/metabolism , Biosynthetic Pathways/genetics , Blotting, Western , Carbon-Carbon Lyases/genetics , Carbon-Carbon Lyases/isolation & purification , Carbon-Carbon Lyases/metabolism , Chlamydomonas reinhardtii/enzymology , Chlamydomonas reinhardtii/metabolism , Chloroplasts/metabolism , Chorismic Acid/metabolism , Coenzyme A Ligases/genetics , Coenzyme A Ligases/isolation & purification , Coenzyme A Ligases/metabolism , Hydro-Lyases/genetics , Hydro-Lyases/isolation & purification , Hydro-Lyases/metabolism , Light , Peroxisomes/metabolism , Photosynthesis/genetics , Photosynthesis/radiation effects , Photosystem I Protein Complex/genetics , Photosystem I Protein Complex/metabolism , Reverse Transcriptase Polymerase Chain Reaction , Sequence Homology, Amino Acid , Vitamin K 1/metabolism
19.
J Chromatogr B Analyt Technol Biomed Life Sci ; 1033-1034: 368-371, 2016 Oct 15.
Article in English | MEDLINE | ID: mdl-27631574

ABSTRACT

Phylloquinone is a redox active naphthoquinone involved in electron transport in plants. The function of this reduced form remains unclear due to its instability, which has precluded detection. Herein, a simple method that permits the stabilization of the reduced form of phylloquinone by di-O-methylation and HPLC detection is described.


Subject(s)
Vitamin K 1/analogs & derivatives , Vitamin K 1/analysis , Vitamin K 1/chemistry , Chromatography, High Pressure Liquid , Electrochemistry , Methylation
20.
J Chromatogr A ; 1338: 102-10, 2014 Apr 18.
Article in English | MEDLINE | ID: mdl-24630057

ABSTRACT

Unlike the other fat-soluble vitamins, vitamin K circulates in the human bloodstream at very low levels because of a low intake in the diet. Mammals have developed an efficient recycling system, known as vitamin K-epoxide cycle, which involve quinone, hydroquinone and epoxide forms of the vitamin. Phylloquinone (K(1)) is the main homologue, while menaquinone-4 (MK-4) is both a member of the vitamin K(2) family and metabolite of K(1) in extra-hepatic tissues. Notwithstanding the recent advances, many aspects of the complex vitamin K physiology still remain to be investigated. Therefore, there is a critical need to develop more reliable analytical methods for determining the vitamin K and its metabolites in biological fluids and tissues. Nevertheless, relatively low concentrations, unavailability of some authentic standards and occurrence of interfering lipids make this a challenging task. The method proposed in the present paper can directly and accurately estimate K(1), K(1) 2,3-epoxide (K(1)O), and MK-4 in human serum and plasma at concentrations in the ng/L-µg/L range, using labelled internal standards and a quadrupole linear ion trap instrument operated in multiple reaction monitoring (MRM) mode. High sensitivity was achieved by removing signal "endogenous suppressors" and making the composition of the non-aqueous mobile phase suitable to support the positive atmospheric pressure chemical ionization of the analytes. An excellent selectivity resulted from the combination of some factors: the MRM acquisition, the adoption of an identification point system, an extraction optimized to remove most of the lipids and a tandem-C18 column-system necessary to separate isobaric interferences from analytes. The method was validated according to the Food and Drug Administration (FDA) guidelines and its accuracy was assessed by analysing 9 samples from the Vitamin K External Quality Assessment Scheme (KEQAS). Its feasibility in evaluating vitamin K status in human serum was also tested by monitoring a group of six healthy subjects and a group of six patients under oral anticoagulant therapy (OAT). Warfarinised patients did not show deficiency of K1 but levels comparable with those of healthy people and an accumulation of K1O up to 3.760µg/L. MK-4 was not detected in either of the two groups.


Subject(s)
Chromatography, High Pressure Liquid/methods , Epoxy Compounds/blood , Tandem Mass Spectrometry/methods , Vitamin K 1/analogs & derivatives , Vitamin K 2/analogs & derivatives , Vitamin K/blood , Vitamins/blood , Epoxy Compounds/chemistry , Humans , Time Factors , Vitamin K/analogs & derivatives , Vitamin K 1/blood , Vitamin K 1/chemistry , Vitamin K 2/blood , Vitamin K 2/chemistry , Vitamins/chemistry
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