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1.
Methods Mol Biol ; 2177: 119-141, 2020.
Article in English | MEDLINE | ID: mdl-32632810

ABSTRACT

Endosomes play a major role in various cellular processes including cell-cell signaling, development and cellular responses to environment. Endosomes are dynamically organized into a complex set of endomembrane compartments themselves subcompartmentalized in distinct pools or subpopulations. It is increasingly evident that endosome dynamics and maturation is driven by local modification of lipid composition. The diversity of membrane lipids is impressive and their homeostasis often involves crosstalk between distinct lipid classes. Hence, biochemical characterization of endosomal membrane lipidome would clarify the maturation steps of endocytic routes. Immunopurification of intact endomembrane compartments has been employed in recent years to isolate early and late endosomal compartments and can even be used to separate subpopulations of early endosomes. In this section, we will describe the immunoprecipitation protocol to isolate endosomes with the aim to analyze the lipid content. We will detail a procedure to identify the total fatty acid and sterol content of isolated endosomes as a first line of lipid identification. Advantages and limitations of the method will be discussed as well as potential pitfalls and critical steps.


Subject(s)
Arabidopsis/cytology , Endosomes/chemistry , Membrane Lipids/analysis , Arabidopsis/chemistry , Arabidopsis/metabolism , Fatty Acids/analysis , Mass Spectrometry , Protein Transport , Sterols/analysis , trans-Golgi Network/chemistry
2.
J Biol Chem ; 295(13): 4277-4288, 2020 03 27.
Article in English | MEDLINE | ID: mdl-32075908

ABSTRACT

ORPphilins are bioactive natural products that strongly and selectively inhibit the growth of some cancer cell lines and are proposed to target intracellular lipid-transfer proteins of the oxysterol-binding protein (OSBP) family. These conserved proteins exchange key lipids, such as cholesterol and phosphatidylinositol 4-phosphate (PI(4)P), between organelle membranes. Among ORPphilins, molecules of the schweinfurthin family interfere with intracellular lipid distribution and metabolism, but their functioning at the molecular level is poorly understood. We report here that cell line sensitivity to schweinfurthin G (SWG) is inversely proportional to cellular OSBP levels. By taking advantage of the intrinsic fluorescence of SWG, we followed its fate in cell cultures and show that its incorporation at the trans-Golgi network depends on cellular abundance of OSBP. Using in vitro membrane reconstitution systems and cellular imaging approaches, we also report that SWG inhibits specifically the lipid transfer activity of OSBP. As a consequence, post-Golgi trafficking, membrane cholesterol levels, and PI(4)P turnover were affected. Finally, using intermolecular FRET analysis, we demonstrate that SWG directly binds to the lipid-binding cavity of OSBP. Collectively these results describe SWG as a specific and intrinsically fluorescent pharmacological tool for dissecting OSBP properties at the cellular and molecular levels. Our findings indicate that SWG binds OSBP with nanomolar affinity, that this binding is sensitive to the membrane environment, and that SWG inhibits the OSBP-catalyzed lipid exchange cycle.


Subject(s)
Biological Transport/drug effects , Lipids/genetics , Receptors, Steroid/metabolism , Stilbenes/metabolism , Carrier Proteins/chemistry , Carrier Proteins/genetics , Endoplasmic Reticulum/chemistry , Endoplasmic Reticulum/genetics , Fluorescence , Humans , Lipids/chemistry , Protein Binding/genetics , Protein Transport/genetics , Receptors, Steroid/chemistry , Stilbenes/chemistry , trans-Golgi Network/chemistry , trans-Golgi Network/genetics
3.
Traffic ; 18(9): 590-603, 2017 09.
Article in English | MEDLINE | ID: mdl-28691777

ABSTRACT

Tepsin is currently the only accessory trafficking protein identified in adaptor-related protein 4 (AP4)-coated vesicles originating at the trans-Golgi network (TGN). The molecular basis for interactions between AP4 subunits and motifs in the tepsin C-terminus have been characterized, but the biological role of tepsin remains unknown. We determined X-ray crystal structures of the tepsin epsin N-terminal homology (ENTH) and VHS/ENTH-like domains. Our data reveal unexpected structural features that suggest key functional differences between these and similar domains in other trafficking proteins. The tepsin ENTH domain lacks helix0, helix8 and a lipid binding pocket found in epsin1/2/3. These results explain why tepsin requires AP4 for its membrane recruitment and further suggest ENTH domains cannot be defined solely as lipid binding modules. The VHS domain lacks helix8 and thus contains fewer helices than other VHS domains. Structural data explain biochemical and biophysical evidence that tepsin VHS does not mediate known VHS functions, including recognition of dileucine-based cargo motifs or ubiquitin. Structural comparisons indicate the domains are very similar to each other, and phylogenetic analysis reveals their evolutionary pattern within the domain superfamily. Phylogenetics and comparative genomics further show tepsin within a monophyletic clade that diverged away from epsins early in evolutionary history (~1500 million years ago). Together, these data provide the first detailed molecular view of tepsin and suggest tepsin structure and function diverged away from other epsins. More broadly, these data highlight the challenges inherent in classifying and understanding protein function based only on sequence and structure.


Subject(s)
Adaptor Proteins, Vesicular Transport/metabolism , trans-Golgi Network/metabolism , Adaptor Proteins, Vesicular Transport/chemistry , Binding Sites , Clathrin/metabolism , Humans , Protein Structure, Secondary/physiology , Ubiquitin/metabolism , trans-Golgi Network/chemistry
4.
Biochim Biophys Acta ; 1861(2): 98-107, 2016 Feb.
Article in English | MEDLINE | ID: mdl-26577406

ABSTRACT

High density lipoprotein (HDL) and its main protein component apolipoprotein A-I (ApoA-I) have multiple anti-atherogenic functions. Some of them are exerted within the vessel wall, so that HDL needs to pass the endothelial barrier. To elucidate their itinerary through endothelial cells (ECs), we labelled ApoA-I and HDL either fluorescently or with 1.4 nm nanogold and investigated their cellular localization by using immunofluorescent microscopy (IFM) and electron microscopy (EM). HDL as well as ApoA-I is taken up by ECs into the same route of intracellular trafficking. Time kinetics and pulse chase experiments revealed that HDL is trafficked through different vesicles. HDL partially co-localized with LDL, albumin, and transferrin. HDL did not co-localize with clathrin and caveolin-1. Fluorescent HDL was recovered at small proportions in early endosomes and endosome to trans-golgi network vesicles but not at all in recycling endosomes, in late endosomes or lysosomes. EM identified HDL mainly in large filled vesicles which however upon IFM did not colocalize with markers of multivesicular bodies or autophagosomes. The uptake or cellular distribution of HDL was altered upon pharmacological interference with cytochalasine D, colchicine and dynasore. Blockage of fluid phase uptake with Amiloride or EIPA did not reduce the uptake of HDL. Neither did we observe any co-localization of HDL with dextran as the marker of fluid phase uptake. In conclusion, HDL and ApoA-I are internalized and trafficked by endothelial cells through a non-classical endocytic route.


Subject(s)
Apolipoprotein A-I/metabolism , Endothelial Cells/metabolism , Lipoproteins, HDL/metabolism , Transport Vesicles/metabolism , trans-Golgi Network/metabolism , Animals , Aorta/cytology , Aorta/drug effects , Aorta/metabolism , Biological Transport , Cattle , Caveolin 1/metabolism , Clathrin/metabolism , Colchicine/pharmacology , Cytochalasin D/pharmacology , Endocytosis , Endothelial Cells/cytology , Endothelial Cells/drug effects , Fluorescent Dyes , Gold , Hydrazones/pharmacology , Kinetics , Lipoproteins, LDL/metabolism , Nanostructures/chemistry , Primary Cell Culture , Serum Albumin/metabolism , Transferrin/metabolism , Transport Vesicles/chemistry , Transport Vesicles/drug effects , trans-Golgi Network/chemistry , trans-Golgi Network/drug effects
5.
Biochim Biophys Acta ; 1858(4): 632-9, 2016 Apr.
Article in English | MEDLINE | ID: mdl-26706096

ABSTRACT

Glycosylphosphatidylinositol (GPI)-anchored proteins (GPI-APs) are a class of membrane proteins containing a soluble protein attached by a conserved glycolipid anchor to the external leaflet of the plasma membrane. In polarized epithelial cells, GPI-APs are predominantly sorted to the apical surface in the trans-Golgi network (TGN) by clustering in sphingolipid- and cholesterol-dependent microdomains (or rafts), which have been proposed to act as apical sorting platforms. Recent data indicate that the mechanisms of GPI-AP sorting, occurring in the Golgi, control both the membrane transport of GPI-APs and their specific activity at the apical surface of fully polarized epithelial cells. Here, we discuss the most recent findings and the factors regulating apical sorting of GPI-APs at the Golgi in polarized epithelial cells. We also underline the differences in the plasma membrane organization of GPI-APs between polarized and non-polarized cells supporting the existence of various mechanisms that control GPI-AP organization in different cell types.


Subject(s)
Glycosylphosphatidylinositols/chemistry , Membrane Microdomains/chemistry , Membrane Proteins/chemistry , Protein Transport , Cell Membrane/chemistry , Cell Polarity , Cholesterol/chemistry , Cholesterol/metabolism , Epithelial Cells , Glycosylphosphatidylinositols/metabolism , Humans , Membrane Microdomains/metabolism , Membrane Proteins/metabolism , trans-Golgi Network/chemistry , trans-Golgi Network/metabolism
6.
Biochemistry ; 54(45): 6852-61, 2015 Nov 17.
Article in English | MEDLINE | ID: mdl-26497753

ABSTRACT

Membrane lipids are important for the health and proper function of cell membranes. We have improved computational membrane models for specific organelles in yeast Saccharomyces cerevisiae to study the effect of lipid diversity on membrane structure and dynamics. Previous molecular dynamics simulations were performed by Jo et al. [(2009) Biophys J. 97, 50-58] on yeast membrane models having six lipid types with compositions averaged between the endoplasmic reticulum (ER) and the plasma membrane (PM). We incorporated ergosterol, phosphatidic acid, phosphatidylcholine, phosphatidylethanolamine, phosphatidylserine, and phosphatidylinositol lipids in our models to better describe the unique composition of the PM, ER, and trans-Golgi network (TGN) bilayers of yeast. Our results describe membrane structure based on order parameters (SCD), electron density profiles (EDPs), and lipid packing. The average surface area per lipid decreased from 63.8 ± 0.4 Å(2) in the ER to 47.1 ± 0.3 Å(2) in the PM, while the compressibility modulus (KA) varied in the opposite direction. The high SCD values for the PM lipids indicated a more ordered bilayer core, while the corresponding lipids in the ER and TGN models had lower parameters by a factor of at least 0.7. The hydrophobic core thickness (2DC) as estimated from EDPs is the thickest for PM, which is in agreement with estimates of hydrophobic regions of transmembrane proteins from the Orientation of Proteins in Membranes database. Our results show the importance of lipid diversity and composition on a bilayer's structural and mechanical properties, which in turn influences interactions with the proteins and membrane-bound molecules.


Subject(s)
Computer Simulation , Intracellular Membranes/chemistry , Lipid Bilayers/chemistry , Membrane Lipids/chemistry , Models, Biological , Saccharomyces cerevisiae/metabolism , Cell Membrane/chemistry , Deuterium/chemistry , Endoplasmic Reticulum/chemistry , Endoplasmic Reticulum/ultrastructure , Ergosterol/chemistry , Hydrophobic and Hydrophilic Interactions , Membrane Fluidity , Membrane Proteins/chemistry , Models, Molecular , Molecular Dynamics Simulation , Phosphatidic Acids/chemistry , Phosphatidylcholines/chemistry , Phosphatidylethanolamines/chemistry , Phosphatidylinositols/chemistry , Phosphatidylserines/chemistry , Saccharomyces cerevisiae/ultrastructure , Saccharomyces cerevisiae Proteins/chemistry , trans-Golgi Network/chemistry , trans-Golgi Network/ultrastructure
7.
Annu Rev Biochem ; 83: 51-77, 2014.
Article in English | MEDLINE | ID: mdl-24606148

ABSTRACT

Lipids are unevenly distributed within and between cell membranes, thus defining organelle identity. Such distribution relies on local metabolic branches and mechanisms that move lipids. These processes are regulated by feedback mechanisms that decipher topographical information in organelle membranes and then regulate lipid levels or flows. In the endoplasmic reticulum, the major lipid source, transcriptional regulators and enzymes sense changes in membrane features to modulate lipid production. At the Golgi apparatus, lipid-synthesizing, lipid-flippase, and lipid-transport proteins (LTPs) collaborate to control lipid balance and distribution within the membrane to guarantee remodeling processes crucial for vesicular trafficking. Open questions exist regarding LTPs, which are thought to be lipid sensors that regulate lipid synthesis or carriers that transfer lipids between organelles across long distances or in contact sites. A novel model is that LTPs, by exchanging two different lipids, exploit one lipid gradient between two distinct membranes to build a second lipid gradient.


Subject(s)
Cell Membrane/metabolism , Lipids/chemistry , Animals , Biological Transport , Endoplasmic Reticulum/metabolism , Feedback, Physiological , Fungi/physiology , Golgi Apparatus/metabolism , Humans , Intracellular Membranes/metabolism , Organelles/metabolism , Phospholipids/chemistry , Signal Transduction , Sterols/chemistry , trans-Golgi Network/chemistry
8.
ScientificWorldJournal ; 2014: 792420, 2014.
Article in English | MEDLINE | ID: mdl-24558328

ABSTRACT

Cellulose synthase-like (Csl) genes are believed to encode enzymes for the synthesis of cell wall matrix polysaccharides. The subfamily of CslA is putatively involved in the biosynthesis of ß -mannans. Here we report a study on the cellular localization and the enzyme activity of an Arabidopsis CslA family member, AtCslA2. We show that the fluorescent protein fusion AtCslA2-GFP, transiently expressed in tobacco leaf protoplasts, is synthesized in the ER and it accumulates in the Golgi stacks. The chimera is inserted in the Golgi membrane and is functional since membrane preparations obtained by transformed protoplasts carry out the in vitro synthesis of a 14C-mannan starting from GDP-D-[U-14C]mannose as substrate. The enzyme specific activity is increased by approximately 38% in the transformed protoplasts with respect to wild-type. Preliminary tests with proteinase K, biochemical data, and TM domain predictions suggest that the catalytic site of AtCslA2 faces the Golgi lumen.


Subject(s)
Arabidopsis , Chimera , Fluorescent Dyes/chemistry , Glucosyltransferases/chemistry , trans-Golgi Network/chemistry , Arabidopsis/enzymology , Biochemical Phenomena , Chimera/metabolism , Fluorescent Dyes/metabolism , Glucosyltransferases/metabolism , Plant Leaves/enzymology , Nicotiana/enzymology , trans-Golgi Network/enzymology
9.
Metallomics ; 5(8): 964-72, 2013 Aug.
Article in English | MEDLINE | ID: mdl-23803742

ABSTRACT

The copper (Cu) exporter ATP7B mediates cellular resistance to cisplatin (cDDP) by increasing drug efflux. ATP7B binds and sequesters cDDP in into secretory vesicles. Upon cDDP exposure ATP7B traffics from the trans-Golgi network (TGN) to the periphery of the cell in a manner that requires the cysteine residues in its metal binding domains (MBD). To elucidate the role of the various domains of ATP7B in its cDDP-induced trafficking we expressed a series of mCherry-tagged variants of ATP7B in HEK293T cells and analyzed their subcellular localization in basal media and after a 1 h exposure to 30 µM cDDP. The wild type ATP7B and a variant in which the cysteines in the CXXC motifs of MBD 1-5 were converted to serines trafficked out of the trans-Golgi (TGN) when exposed to cDDP. Conversion of the cysteines in all 6 of the CXXC motifs to serines, or in only the sixth MBD, rendered ATP7B incapable of trafficking on exposure to cDDP. Truncation of MBD1-5 or MBD1-6 resulted in the loss of TGN localization. Addition of the first 63 amino acids of ATP7B to these variants restored TGN localization to a great extent and enabled the MBD1-5 variant to undergo cDDP-induced trafficking. A variant of ATP7B in which the aspartate 1027 residue in the phosphorylation domain was converted to glutamine localized to the TGN but was incapable of cDDP-induced trafficking. These results demonstrate that the CXXC motif in the sixth MBD and the catalytic activity of ATP7B are required for cDDP-induced trafficking as they are for Cu-induced redistribution of ATP7B; this provides further evidence that cDDP mimics Cu with respect to the molecular mechanisms by they control the subcellular distribution of ATP7B.


Subject(s)
Adenosine Triphosphatases/chemistry , Cation Transport Proteins/chemistry , Cisplatin/chemistry , Metals/chemistry , Amino Acid Motifs , Aspartic Acid , Catalysis , Copper/chemistry , Copper-Transporting ATPases , Glutathione/chemistry , HEK293 Cells , Humans , Microscopy, Fluorescence , Phosphorylation , Protein Binding , Protein Structure, Tertiary , Time Factors , trans-Golgi Network/chemistry
10.
Metallomics ; 5(8): 946-54, 2013 Aug.
Article in English | MEDLINE | ID: mdl-23778981

ABSTRACT

The human metallo-chaperone protein Atox1 features a high affinity Cu(I) binding site Cys(12)GlyGlyCys(15) (KD = 10(-17.4) M at pH 7.0) and delivers copper to the trans-Golgi network (TGN). Atox1 may participate in the metabolism of the drug cis-Pt(NH3)2Cl2 (cisplatin), either as a component of its delivery to the nucleus or of its loss via transport to the TGN and beyond. The species of stoichiometry [Pt(NH3)2(Atox1)] was the sole adduct of stoichiometry Pt : Atox1 = 1 : 1 detected by mass spectrometry under non-denaturing conditions from solutions containing cisplatin and apo-Atox1. The ions [Atox1 + Pt(NH3)2(2+) + (z - 2)H(+)](z+) (z = 3 to 7) were observed and correspond to different protonation states of the 1 : 1 adduct. Adducts of stoichiometry Pt : Atox1 = 2 : 1 were also detected but 1 : 2 adducts were not detected. The related complex Pt(en)Cl2 (en = 1,2-diaminoethane) behaved similarly. Tandem mass spectrometry experiments using top-down and bottom-up sequencing techniques were carried out, respectively, on the intact platinated protein and on platinated peptides formed from proteolysis by trypsin. A new software programme (PolyCut) designed to analyse the complex high-resolution tandem mass spectra of fragment ions derived from proteins containing transition metal ions was applied to establish the binding site(s) of the platinum atom(s). The analysis, based on the entire isotope patterns, is consistent with the cysteine residues in the Cu(I)-binding sequence Cys(12)GlyGlyCys(15) being the primary coordination site.


Subject(s)
Cisplatin/analogs & derivatives , Cisplatin/chemistry , Metallochaperones/chemistry , Amino Acid Sequence , Antineoplastic Agents/chemistry , Copper/chemistry , Copper Transport Proteins , Hepatocytes/drug effects , Humans , Hydrogen-Ion Concentration , Ions/chemistry , Ligands , Liver/drug effects , Molecular Chaperones , Molecular Sequence Data , Oxidation-Reduction , Peptides/chemistry , Protein Binding , Protein Conformation , Protons , Spectrometry, Mass, Electrospray Ionization , Tandem Mass Spectrometry , Transition Elements/chemistry , Trypsin/chemistry , trans-Golgi Network/chemistry
11.
Nat Nanotechnol ; 8(6): 459-67, 2013 Jun.
Article in English | MEDLINE | ID: mdl-23708428

ABSTRACT

DNA is a versatile scaffold for molecular sensing in living cells, and various cellular applications of DNA nanodevices have been demonstrated. However, the simultaneous use of different DNA nanodevices within the same living cell remains a challenge. Here, we show that two distinct DNA nanomachines can be used simultaneously to map pH gradients along two different but intersecting cellular entry pathways. The two nanomachines, which are molecularly programmed to enter cells via different pathways, can map pH changes within well-defined subcellular environments along both pathways inside the same cell. We applied these nanomachines to probe the pH of early endosomes and the trans-Golgi network, in real time. When delivered either sequentially or simultaneously, both nanomachines localized into and independently captured the pH of the organelles for which they were designed. The successful functioning of DNA nanodevices within living systems has important implications for sensing and therapies in a diverse range of contexts.


Subject(s)
Biosensing Techniques , DNA/metabolism , Nanostructures/chemistry , trans-Golgi Network/metabolism , DNA/chemistry , Endocytosis , Endosomes/chemistry , Endosomes/metabolism , Golgi Apparatus/chemistry , Golgi Apparatus/metabolism , Humans , Hydrogen-Ion Concentration , Metabolic Networks and Pathways , Nanotechnology , trans-Golgi Network/chemistry
12.
Structure ; 21(3): 486-92, 2013 Mar 05.
Article in English | MEDLINE | ID: mdl-23395181

ABSTRACT

Exomer is a cargo adaptor that mediates the sorting of specific plasma membrane proteins into vesicles at the trans-Golgi network. Cargo adaptors must bind to multiple partners, including their cargo, regulatory proteins, and the membrane surface. During biogenesis of a vesicle, the membrane makes a transition from a relatively flat surface to one of high curvature, requiring cargo adaptors to somehow maintain protein-protein and protein-membrane interactions on a changing membrane environment. Here, we present the crystal structure of a tetrameric Chs5/Bch1 exomer complex and use small-angle X-ray scattering to demonstrate its flexibility in solution. The structural data suggest that the complex flexes primarily around the dimeric N-terminal domain of the Chs5 subunits, which adopts a noncanonical ß sandwich fold. We propose that this flexible hinge domain enables exomer to maintain interactions in the context of a dynamic membrane environment.


Subject(s)
Chitin Synthase/chemistry , Membrane Glycoproteins/chemistry , Protein Subunits/chemistry , Saccharomyces cerevisiae Proteins/chemistry , Saccharomyces cerevisiae/chemistry , Binding Sites , Chitin Synthase/genetics , Crystallography, X-Ray , Escherichia coli/genetics , Kinetics , Membrane Glycoproteins/genetics , Molecular Dynamics Simulation , Mutation , Protein Binding , Protein Folding , Protein Multimerization , Protein Structure, Secondary , Protein Structure, Tertiary , Protein Subunits/genetics , Protein Transport , Recombinant Proteins/chemistry , Recombinant Proteins/genetics , Saccharomyces cerevisiae/genetics , Saccharomyces cerevisiae Proteins/genetics , Structure-Activity Relationship , Thermodynamics , trans-Golgi Network/chemistry
13.
J Biol Chem ; 287(12): 9052-60, 2012 Mar 16.
Article in English | MEDLINE | ID: mdl-22294700

ABSTRACT

Proprotein convertase 7 (PC7) is a member of the subtilisin-like proprotein convertase family, which is involved in the endoproteolysis of a variety of precursor proteins. Under steady state conditions, PC7 is mainly localized in the trans-Golgi network, but a small fraction is found at the cell surface. So far, no sorting signals for membrane trafficking have been identified in PC7. In this study, we have examined the internalization of PC7 from the plasma membrane. Our results show that internalization of PC7 is mediated by clathrin-coated vesicles. After inhibition of clathrin-mediated endocytosis using hypertonic conditions or the small molecule inhibitor, Pitstop 2, PC7 accumulated at the plasma membrane. Furthermore, PC7 was present in isolated clathrin-coated vesicles. To determine the internalization motif, constructs were generated in which parts of the N and C terminus of the cytoplasmic tail of PC7 were deleted, and chimeric proteins were constructed consisting of the luminal and transmembrane domains of Tac (CD25) and parts of the cytoplasmic domain of PC7. Antibody uptake experiments as well as surface biotinylation experiments demonstrated that the region between Ala(713) and Cys(726) in the cytoplasmic domain of PC7 is essential and sufficient for the internalization of PC7 but not for trans-Golgi network localization. Individual amino acids in this region were substituted with alanine, which identified Pro, Leu, and Cys as the essential amino acids. In conclusion, internalization of PC7 depends on a short transferable sequence in the cytoplasmic tail, which contains the three crucial amino acids PLC.


Subject(s)
Cell Membrane/enzymology , Endocytosis , Subtilisins/chemistry , Subtilisins/metabolism , trans-Golgi Network/enzymology , Amino Acid Motifs , Amino Acid Sequence , Cell Line , Cell Membrane/chemistry , Cell Membrane/genetics , Humans , Molecular Sequence Data , Protein Transport , Subtilisins/genetics , trans-Golgi Network/chemistry , trans-Golgi Network/metabolism
14.
J Comp Neurol ; 520(5): 889-913, 2012 Apr 01.
Article in English | MEDLINE | ID: mdl-21953547

ABSTRACT

Protein interacting specifically with Tc10, PIST, is a Golgi-associated sorting protein involved in regulating cell-surface targeting of plasma membrane receptors. The present study provides the first comprehensive description of PIST distribution in the mammalian central nervous system and of its subcellular localization by immunocytochemistry. PIST is distributed widely throughout the neuraxis, predominantly associated with neuronal cell bodies and dendrites. In hippocampal neurons, in vitro and in situ, PIST displayed a patchy subcellular distribution in an area surrounding the nucleus and extending into one of the major dendrites. By colocalization with the trans-Golgi marker TGN38, we were able to show that PIST is associated largely but not exclusively with the trans-Golgi network in central neurons. High or moderate to high levels of PIST-like immunoreactivity were found in cortical areas, in particular in layer V of the neocortex. The motor cortex was most strongly labeled. Also, the piriform and insular cortices displayed strong PIST labeling. In the hippocampus, CA2 but not CA1 or CA3 pyramidal cells displayed strong PIST-labeling, extending into their apical dendrites. In the thalamus, ventrolateral and laterodorsal nuclei were most strongly stained, whereas in the hypothalamus the supraoptic nucleus stood out with strong immunoreactivity. Strikingly, in the brainstem all cranial nerve motor nuclei were PIST-positive at varying levels, which is in keeping with the prominent expression of PIST in forebrain motor areas. This selective distribution of PIST suggests that the protein serves distinctive roles in specific neuronal populations, establishing functionally distinct zones, for instance, in the hippocampus.


Subject(s)
Carrier Proteins/metabolism , Central Nervous System/metabolism , Nerve Tissue Proteins/metabolism , Receptors, Cell Surface/metabolism , Subcellular Fractions/metabolism , Animals , Carrier Proteins/chemistry , Cells, Cultured , Central Nervous System/chemistry , Guinea Pigs , HEK293 Cells , Hippocampus/chemistry , Hippocampus/metabolism , Humans , Male , Membrane Glycoproteins/metabolism , Nerve Tissue Proteins/chemistry , Rats , Rats, Sprague-Dawley , Subcellular Fractions/chemistry , trans-Golgi Network/chemistry , trans-Golgi Network/metabolism
15.
J Virol ; 85(19): 9737-48, 2011 Oct.
Article in English | MEDLINE | ID: mdl-21775465

ABSTRACT

Tetherin (BST-2/CD317) is thought to restrict retroviral particle release by cross-linking nascent viral and cellular membranes. Unlike the Vpu proteins encoded by human immunodeficiency virus type 1 (HIV-1) group M strains (M-Vpu), those from the nonpandemic HIV-1 group O (O-Vpu) are not able to counteract tetherin activity. Here, we characterized the basis of this defect in O-Vpu. O-Vpu differs from M-Vpu in that it fails to interact with tetherin and downregulate it from the cell surface. Unlike M-Vpu, O-Vpu localizes to the endoplasmic reticulum (ER) rather than the trans-Golgi network (TGN). Interestingly M-Vpu bearing an ER retention signal at the C terminus localizes similarly to O-Vpu. While it still interacts with tetherin, it fails to promote virus release, suggesting that O-Vpu deficiency correlates with its cellular distribution in the endoplasmic reticulum as well as its failure to bind tetherin. O-Vpu-M-Vpu chimeras were designed to identify the minimal changes required to restore tetherin antagonism. While several chimeric proteins bearing residues of the M-Vpu transmembrane domain into the O-Vpu transmembrane domain recovered tetherin binding in coimmunoprecipitation studies, efficient antagonism required an additional glutamic acid-to-lysine change in the membrane-proximal hinge region of the O-Vpu cytoplasmic tail that was sufficient to abolish ER retention and permit TGN localization.


Subject(s)
HIV-1/pathogenicity , Human Immunodeficiency Virus Proteins/genetics , Human Immunodeficiency Virus Proteins/metabolism , Viral Regulatory and Accessory Proteins/genetics , Viral Regulatory and Accessory Proteins/metabolism , Virulence Factors/genetics , Virulence Factors/metabolism , Virus Release , Antigens, CD , Endoplasmic Reticulum/chemistry , GPI-Linked Proteins/antagonists & inhibitors , HeLa Cells , Humans , Protein Binding , Protein Interaction Mapping , Recombinant Proteins/genetics , Recombinant Proteins/metabolism , trans-Golgi Network/chemistry
16.
J Cell Biol ; 194(2): 257-75, 2011 Jul 25.
Article in English | MEDLINE | ID: mdl-21788369

ABSTRACT

Phosphatidylserine (PS) plays a central role in cell signaling and in the biosynthesis of other lipids. To date, however, the subcellular distribution and transmembrane topology of this crucial phospholipid remain ill-defined. We transfected cells with a GFP-tagged C2 domain of lactadherin to detect by light and electron microscopy PS exposed on the cytosolic leaflet of the plasmalemma and organellar membranes. Cytoplasmically exposed PS was found to be clustered on the plasma membrane, and to be associated with caveolae, the trans-Golgi network, and endocytic organelles including intraluminal vesicles of multivesicular endosomes. This labeling pattern was compared with the total cellular distribution of PS as visualized using a novel on-section technique. These complementary methods revealed PS in the interior of the ER, Golgi complex, and mitochondria. These results indicate that PS in the lumenal monolayer of the ER and Golgi complex becomes exposed cytosolically at the trans-Golgi network. Transmembrane flipping of PS may contribute to the exit of cargo from the Golgi complex.


Subject(s)
Phosphatidylserines/analysis , 3T3-L1 Cells , Animals , COS Cells , Cell Membrane/chemistry , Cell Membrane/metabolism , Cells, Cultured , Chlorocebus aethiops , Endoplasmic Reticulum/chemistry , Endoplasmic Reticulum/metabolism , Endosomes/chemistry , Endosomes/metabolism , HeLa Cells , Humans , Mice , Microscopy, Fluorescence , Mitochondria/chemistry , Mitochondria/metabolism , Phosphatidylserines/metabolism , Tissue Distribution , trans-Golgi Network/chemistry , trans-Golgi Network/metabolism
17.
J Biol Chem ; 286(21): 18650-7, 2011 May 27.
Article in English | MEDLINE | ID: mdl-21454700

ABSTRACT

Four-phosphate-adaptor protein 1 (FAPP1) regulates secretory transport from the trans-Golgi network (TGN) to the plasma membrane. FAPP1 is recruited to the Golgi through binding of its pleckstrin homology (PH) domain to phosphatidylinositol 4-phosphate (PtdIns(4)P) and a small GTPase ADP-ribosylation factor 1 (ARF1). Despite the critical role of FAPP1 in membrane trafficking, the molecular basis of its dual function remains unclear. Here, we report a 1.9 Å resolution crystal structure of the FAPP1 PH domain and detail the molecular mechanisms of the PtdIns(4)P and ARF1 recognition. The FAPP1 PH domain folds into a seven-stranded ß-barrel capped by an α-helix at one edge, whereas the opposite edge is flanked by three loops and the ß4 and ß7 strands that form a lipid-binding pocket within the ß-barrel. The ARF1-binding site is located on the outer side of the ß-barrel as determined by NMR resonance perturbation analysis, mutagenesis, and measurements of binding affinities. The two binding sites have little overlap, allowing FAPP1 PH to associate with both ligands simultaneously and independently. Binding to PtdIns(4)P is enhanced in an acidic environment and is required for membrane penetration and tubulation activity of FAPP1, whereas the GTP-bound conformation of the GTPase is necessary for the interaction with ARF1. Together, these findings provide structural and biochemical insight into the multivalent membrane anchoring by the PH domain that may augment affinity and selectivity of FAPP1 toward the TGN membranes enriched in both PtdIns(4)P and GTP-bound ARF1.


Subject(s)
ADP-Ribosylation Factor 1/chemistry , Adaptor Proteins, Signal Transducing/chemistry , Intracellular Membranes/chemistry , Phosphatidylinositol Phosphates/chemistry , Protein Folding , trans-Golgi Network/chemistry , ADP-Ribosylation Factor 1/genetics , ADP-Ribosylation Factor 1/metabolism , Adaptor Proteins, Signal Transducing/genetics , Adaptor Proteins, Signal Transducing/metabolism , Biological Transport , Crystallography, X-Ray , Humans , Intracellular Membranes/metabolism , Mutagenesis , Nuclear Magnetic Resonance, Biomolecular , Phosphatidylinositol Phosphates/genetics , Phosphatidylinositol Phosphates/metabolism , Protein Binding , Protein Structure, Tertiary , Structure-Activity Relationship , trans-Golgi Network/genetics , trans-Golgi Network/metabolism
18.
Traffic ; 12(3): 313-29, 2011 Mar.
Article in English | MEDLINE | ID: mdl-21134079

ABSTRACT

The trans Golgi network (TGN) of plant cells sorts and packages Golgi products into secretory (SV) and clathrin-coated (CCV) vesicles. We have analyzed of TGN cisternae in Arabidopsis root meristem cells by cell fractionation and electron microscopy/tomography to establish reliable criteria for identifying TGN cisternae in plant cells, and to define their functional attributes. Transformation of a trans Golgi cisterna into a Golgi-associated TGN cisterna begins with cisternal peeling, the formation of SV buds outside the plane of the cisterna and a 30-35% reduction in cisternal membrane area. Free TGN compartments are defined as cisternae that have detached from the Golgi to become independent organelles. Golgi-associated and free TGN compartments, but not trans Golgi cisternae, bind anti-RabA4b and anti-phosphatidylinositol-4 kinase (PI-4K) antibodies. RabA4b and PI-4Kß1 localize to budding SVs in the TGN and to SVs en route to the cell surface. SV and CCV release occurs simultaneously via cisternal fragmentation, which typically yields ∼30 vesicles and one to four residual cisternal fragments. Early endosomal markers, VHA-a1-green fluorescent protein (GFP) and SYP61-cyan fluorescent protein (CFP), colocalized with RabA4b in TGN cisternae, suggesting that the secretory and endocytic pathways converge at the TGN. pi4k1/pi4k2 knockout mutant plants produce SVs with highly variable sizes indicating that PI-4Kß1/2 regulates SV size.


Subject(s)
1-Phosphatidylinositol 4-Kinase/metabolism , Arabidopsis Proteins/metabolism , Arabidopsis , Electron Microscope Tomography , rab4 GTP-Binding Proteins/metabolism , 1-Phosphatidylinositol 4-Kinase/genetics , Arabidopsis/enzymology , Arabidopsis/ultrastructure , Arabidopsis Proteins/genetics , Cell Membrane/ultrastructure , Cell Wall/chemistry , Cell Wall/metabolism , Cell Wall/ultrastructure , Cytokinesis/physiology , Gene Knockout Techniques , Immunohistochemistry , Mutation , Plant Roots/enzymology , Plant Roots/ultrastructure , Polysaccharides/analysis , Secretory Vesicles/ultrastructure , rab4 GTP-Binding Proteins/genetics , trans-Golgi Network/chemistry , trans-Golgi Network/ultrastructure
19.
Mol Biol Cell ; 21(23): 4141-50, 2010 Dec.
Article in English | MEDLINE | ID: mdl-20881054

ABSTRACT

Cholesterol and sphingomyelin (SM) associate in raft domains and are metabolically coregulated. One aspect of coordinate regulation occurs in the Golgi apparatus where oxysterol binding protein (OSBP) mediates sterol-dependent activation of ceramide transport protein (CERT) activity and SM synthesis. Because CERT transfer activity is dependent on its phosphatidylinositol 4 phosphate [PtdIns(4)P]-specific pleckstrin homology domain, we investigated whether OSBP activation of CERT involved a Golgi-associated PtdIns 4-kinase (PI4K). Cell fractionation experiments revealed that Golgi/endosome-enriched membranes from 25-hydroxycholesterol-treated Chinese hamster ovary cells had increased activity of a sterol-sensitive PI4K that was blocked by small interfering RNA silencing of OSBP. Consistent with this sterol-requirement, OSBP silencing also reduced the cholesterol content of endosome/trans-Golgi network (TGN) fractions containing PI4KIIα. PI4KIIα, but not PI4KIIIß, was required for oxysterol-activation of SM synthesis and recruitment of CERT to the Golgi apparatus. However, neither PI4KIIα nor PI4KIIIß expression was required for 25-hydroxycholesterol-dependent translocation of OSBP to the Golgi apparatus. The presence of OSBP, CERT, and PI4KIIα in the TGN of oxysterol-stimulated cells suggests that OSBP couples sterol binding or transfer activity with regulation of PI4KIIα activity, leading to CERT recruitment to the TGN and increased SM synthesis.


Subject(s)
Golgi Apparatus/metabolism , Hydroxycholesterols/pharmacology , Phosphotransferases (Alcohol Group Acceptor)/metabolism , Receptors, Steroid/metabolism , Sphingomyelins/biosynthesis , Animals , CHO Cells , Cell Fractionation , Cricetinae , Cricetulus/metabolism , Gene Silencing , Intracellular Membranes/metabolism , Microscopy, Fluorescence , Minor Histocompatibility Antigens , RNA, Small Interfering , trans-Golgi Network/chemistry
20.
Acta Virol ; 54(3): 197-203, 2010.
Article in English | MEDLINE | ID: mdl-20822312

ABSTRACT

The 81-aa Vpu protein of Human immunodeficiency virus 1 (HIV-1) is a structural analogue of the M2 protein of influenza A virus (IAV). Expression of Vpu in Xenopus oocytes has showed that it can form a voltage-activated ion channel permeable to Na+ and K+ ions (Ewart et al., 1996). To investigate whether Vpu has a pH-modulating activity comparable to that of M2, Vpu was co-expressed with the pH-sensitive hemagglutinin (HA) from IAV. The results indicated that Vpu was unable to reduce the acidity of the exocytic pathway and reduce the conversion of the pH-sensitive HA to its low-pH conformation during transport to the cell surface. Despite these findings, we did not exclude the possibility that Vpu formed a weak ion channel with almost pore-like characteristics as was recently suggested.


Subject(s)
Hemagglutinin Glycoproteins, Influenza Virus/chemistry , Hemagglutinin Glycoproteins, Influenza Virus/metabolism , Human Immunodeficiency Virus Proteins/metabolism , Viral Regulatory and Accessory Proteins/metabolism , trans-Golgi Network/metabolism , Animals , Cell Line , Cell Membrane/genetics , Cell Membrane/metabolism , Chlorocebus aethiops , HeLa Cells , Hemagglutinin Glycoproteins, Influenza Virus/genetics , Human Immunodeficiency Virus Proteins/genetics , Humans , Hydrogen-Ion Concentration , Protein Conformation , Protein Transport , Viral Regulatory and Accessory Proteins/genetics , trans-Golgi Network/chemistry
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