FunAndes - A functional trait database of Andean plants.

We introduce the FunAndes database, a compilation of functional trait data for the Andean flora spanning six countries. FunAndes contains data on 24 traits across 2,694 taxa, for a total of 105,466 entries. The database features plant-morphological attributes including growth form, and leaf, stem, and wood traits measured at the species or individual level, together with geographic metadata (i.e., coordinates and elevation). FunAndes follows the field names, trait descriptions and units of measurement of the TRY database. It is currently available in open access in the FIGSHARE data repository, and will be part of TRY's next release. Open access trait data from Andean plants will contribute to ecological research in the region, the most species rich terrestrial biodiversity hotspot.

Strong floristic distinctiveness across Neotropical successional forests.

Forests that regrow naturally on abandoned fields are important for restoring biodiversity and ecosystem services, but can they also preserve the distinct regional tree floras? Using the floristic composition of 1215 early successional forests (≤20 years) in 75 human-modified landscapes across the Neotropic realm, we identified 14 distinct floristic groups, with a between-group dissimilarity of 0.97. Floristic groups were associated with location, bioregions, soil pH, temperature seasonality, and water availability. Hence, there is large continental-scale variation in the species composition of early successional forests, which is mainly associated with biogeographic and environmental factors but not with human disturbance indicators. This floristic distinctiveness is partially driven by regionally restricted species belonging to widespread genera. Early secondary forests contribute therefore to restoring and conserving the distinctiveness of bioregions across the Neotropical realm, and forest restoration initiatives should use local species to assure that these distinct floras are maintained.

Competition influences tree growth, but not mortality, across environmental gradients in Amazonia and tropical Africa.

Competition among trees is an important driver of community structure and dynamics in tropical forests. Neighboring trees may impact an individual tree's growth rate and probability of mortality, but large-scale geographic and environmental variation in these competitive effects has yet to be evaluated across the tropical forest biome. We quantified effects of competition on tree-level basal area growth and mortality for trees ≥10-cm diameter across 151 ~1-ha plots in mature tropical forests in Amazonia and tropical Africa by developing nonlinear models that accounted for wood density, tree size, and neighborhood crowding. Using these models, we assessed how water availability (i.e., climatic water deficit) and soil fertility influenced the predicted plot-level strength of competition (i.e., the extent to which growth is reduced, or mortality is increased, by competition across all individual trees). On both continents, tree basal area growth decreased with wood density and increased with tree size. Growth decreased with neighborhood crowding, which suggests that competition is important. Tree mortality decreased with wood density and generally increased with tree size, but was apparently unaffected by neighborhood crowding. Across plots, variation in the plot-level strength of competition was most strongly related to plot basal area (i.e., the sum of the basal area of all trees in a plot), with greater reductions in growth occurring in forests with high basal area, but in Amazonia, the strength of competition also varied with plot-level wood density. In Amazonia, the strength of competition increased with water availability because of the greater basal area of wetter forests, but was only weakly related to soil fertility. In Africa, competition was weakly related to soil fertility and invariant across the shorter water availability gradient. Overall, our results suggest that competition influences the structure and dynamics of tropical forests primarily through effects on individual tree growth rather than mortality and that the strength of competition largely depends on environment-mediated variation in basal area.

Estimating aboveground net biomass change for tropical and subtropical forests: Refinement of IPCC default rates using forest plot data.

As countries advance in greenhouse gas (GHG) accounting for climate change mitigation, consistent estimates of aboveground net biomass change (∆AGB) are needed. Countries with limited forest monitoring capabilities in the tropics and subtropics rely on IPCC 2006 default ∆AGB rates, which are values per ecological zone, per continent. Similarly, research into forest biomass change at a large scale also makes use of these rates. IPCC 2006 default rates come from a handful of studies, provide no uncertainty indications and do not distinguish between older secondary forests and old-growth forests. As part of the 2019 Refinement to the 2006 IPCC Guidelines for National Greenhouse Gas Inventories, we incorporate ∆AGB data available from 2006 onwards, comprising 176 chronosequences in secondary forests and 536 permanent plots in old-growth and managed/logged forests located in 42 countries in Africa, North and South America and Asia. We generated ∆AGB rate estimates for younger secondary forests (≤20 years), older secondary forests (>20 years and up to 100 years) and old-growth forests, and accounted for uncertainties in our estimates. In tropical rainforests, for which data availability was the highest, our ∆AGB rate estimates ranged from 3.4 (Asia) to 7.6 (Africa) Mg ha-1  year-1 in younger secondary forests, from 2.3 (North and South America) to 3.5 (Africa) Mg ha-1  year-1 in older secondary forests, and 0.7 (Asia) to 1.3 (Africa) Mg ha-1  year-1 in old-growth forests. We provide a rigorous and traceable refinement of the IPCC 2006 default rates in tropical and subtropical ecological zones, and identify which areas require more research on ∆AGB. In this respect, this study should be considered as an important step towards quantifying the role of tropical and subtropical forests as carbon sinks with higher accuracy; our new rates can be used for large-scale GHG accounting by governmental bodies, nongovernmental organizations and in scientific research.

Compositional response of Amazon forests to climate change.

Most of the planet's diversity is concentrated in the tropics, which includes many regions undergoing rapid climate change. Yet, while climate-induced biodiversity changes are widely documented elsewhere, few studies have addressed this issue for lowland tropical ecosystems. Here we investigate whether the floristic and functional composition of intact lowland Amazonian forests have been changing by evaluating records from 106 long-term inventory plots spanning 30 years. We analyse three traits that have been hypothesized to respond to different environmental drivers (increase in moisture stress and atmospheric CO2 concentrations): maximum tree size, biogeographic water-deficit affiliation and wood density. Tree communities have become increasingly dominated by large-statured taxa, but to date there has been no detectable change in mean wood density or water deficit affiliation at the community level, despite most forest plots having experienced an intensification of the dry season. However, among newly recruited trees, dry-affiliated genera have become more abundant, while the mortality of wet-affiliated genera has increased in those plots where the dry season has intensified most. Thus, a slow shift to a more dry-affiliated Amazonia is underway, with changes in compositional dynamics (recruits and mortality) consistent with climate-change drivers, but yet to significantly impact whole-community composition. The Amazon observational record suggests that the increase in atmospheric CO2 is driving a shift within tree communities to large-statured species and that climate changes to date will impact forest composition, but long generation times of tropical trees mean that biodiversity change is lagging behind climate change.

Riqueza total de especies de plantas vasculares en un bosque andino de la Cordillera central de Colombia / Total richness of vascular plant species in an Andean forest of the Central Cordillera, Colombia

Resumen Los reportes sobre diversidad de plantas en los bosques tropicales suelen estar restringidos a árboles u otros grupos de plantas leñosas por encima de cierto diámetro del tallo. Sin embargo, otros estudios que incluyen todas las formas de vida sin restricciones de tamaño de los individuos, indican claramente que las plantas no leñosas son igual de importantes. En este estudio se reporta la Riqueza total de especies de plantas vasculares (RTE) en una parcela de una hectárea en un bosque andino del noroccidente de Colombia (6º12'48"N & 75º29'32"O); adicionalmente evaluamos la contribución de los diferentes hábitos de crecimiento a la RTE y el efecto del tamaño de las plantas. Se censaron todos los individuos con diámetro del tronco (D) ≥ 5 cm en 1 ha, y todas las plantas vasculares de todos los tamaños, incluyendo epífitas, en una muestra de 0.25 hectáreas. Se registró un total de 14 545 individuos distribuidos en 318 especies, 72 familias (considerando Pteridophyta como un solo grupo) y 171 géneros. El 99.7 % de las especies son menores de 10 cm de (D) y el 94.4 % son menores a 2.5 cm de (D). Las especies no arbóreas (hierbas terrestres, epífitas y escandentes) representan el 54.3% del total de especies registradas en la parcela, lo que indica que son un componente clave de la estructura, composición y riqueza de este bosque montano neotropical. Estos resultados confirman reportes similares para otros bosques tropicales. Concluimos que para conocer con más detalle la diversidad de florística de un sitio es recomendable: 1) ampliar el rango de tamaño de las plantas considerado comúnmente en los inventarios florísticos y 2) incluir las especies no leñosas; esta información es crucial para tomar mejores decisiones en los esfuerzos de conservación a escala local y global.

Abstract Studies of plant diversity in tropical forests are usually restricted to trees or other groups of woody plants above a certain stem diameter. However, surveys that include all forms of live plants with no restrictions on their sizes, clearly indicate that non-woody plants are equally important. In this study, we reported the total species richness of vascular plants species (TSR) in one hectare plot in an Andean forest in Northwestern Colombia (6º12'48"N & 75º29 32"W). We evaluated the relative contribution of the different growth habits and the effect of the plant size, to TSR. We measured all individuals with diameter (D) ≥ 5 cm in the hectare and all the vascular plants of all sizes, including epiphytes, in a subsample of 0.25 ha. A total of 14 545 individuals distributed in 318 species, 72 families (considering Pteridophyta as one group) and 171 genera were registered. Most of the species showed a (D) < 10 cm (99.7 %) and < 2.5 cm (94.4 %). The no-arboreal species (ground herbs, epiphytes and vines) represented 54.3 % of the total species reported in the plot, indicating that they are important in the structure, composition and species richness of this montane forest. Our results coincide with similar studies in other tropical forests. We concluded that to get a more detailed knowledge of the floristic diversity of a site, it is advisable to: 1) amplify the size range of the plants generally considered in the floristic inventories and 2) to include non-woody species. This information is crucial for making better decisions in local and global conservation efforts. Rev. Biol. Trop. 66(1): 227-236. Epub 2018 March 01.

Carbono aéreo almacenado en tres bosques del Jardín Botánico del Pacifico, Chocó, Colombia

Los bosques tropicales son considerados como un importante depósito de carbono, cuya permanencia en el ecosistema depende en gran medida de que no se manifiesten fenómenos naturales y antrogénicos; por lo que se hace necesario emprender estrategias para su conservación y manejo. Se cuantificó el carbono almacenado en la biomasa aérea en bosques de 12, 30 y 40 años, ubicados en el Jardín Botánico del Pacífico, Bahía Solano Chocó Colombia. Para ello, se les midió diámetro y altura total a todos los individuos presentes con DAP > 10 cm, en nueve Parcelas Temporales de Muestreo de 0,1 ha. Se estimó la biomasa aérea a través de ecuaciones alométricas, el carbono almacenado en la biomasa aérea con una fracción de carbono de 0,5, la tasa de fijación de carbono y dióxido de carbono equivalentes (CO2 eq) mediante el factor de 3,67. Se encontró un carbono almacenado promedio de 48,2 t ha-1, una biomasa aérea de 96,3 t ha-1, una tasa de fijación de carbono promedio de 1,9 t ha-1 año-1. El contenido de carbono de los bosques estudiados aumenta conforme crece la edad de estos, mientras que con la tasa de fijación de carbono sucede todo lo contrario.

Tropical forests are considered as an important carbon deposit, whose permanence in the ecosystem depends to a large extent on the fact that natural and anthrogenic phenomena do not occur; So it is necessary to undertake strategies for its conservation and management. The carbon stored in the aerial biomass was quantified in forests of 12, 30 and 40 years, located in the Botanical Garden of the Pacific, Bahía Solano Chocó-Colombia. For that, total diameter and height were measured in all individuals present with DBH > 10 cm, in nine Temporary Sampling Plots of 0.1 ha. Aerial biomass was estimated through allometric equations, carbon stored in aerial biomass with a carbon fraction of 0.5, carbon-binding rate and carbon dioxide equivalent (CO2 eq) by the factor of 3.67. An average stored carbon of 48.2 t ha-1, an aerial biomass of 96.3 t ha-1, an average carbon fixation rate of 1.9 t ha-1 year -l was found. The carbon content of the studied forests increases as the age of these forests increases, while with the rate of carbon fixation the opposite happens.

Florestas tropicais são considerados como um importante reservatório de carbono, cuja presença no ecossistema depende em grande parte que não natural e antrogénicos fenómenos manifesto; por isso é necessário para empreender estratégias para a sua conservação e gestão. O carbono armazenado na biomassa em florestas l2, 30 e 40, localizado no Jardim Botânico Pacífico Baía Solano Colômbia Chocó foi quantificada. Para este efeito, nós medimos o diâmetro e a altura total de todos os indivíduos presentes com DAP > l0 cm em nove lotes de amostragem temporária 0,l ha. biomassa superficial foi estimada por equações alométrico, carbono armazenado na biomassa acima do solo com uma fracção de carbono de 0,5, a taxa de fixação de carbono e emissões por factor de 3,67 equivalente de carbono (CO2 eq) . um estoques médios de carbono encontrados 48,2 t ha-', uma biomassa de 96,3 t ha-', a taxa de fixação de carbono médio de l,9 t ha-' ano-'. O teor de carbono das florestas estudadas aumenta com a idade destes crescendo, enquanto a taxa de fixação de carbono oposto acontece.

Forest biomass density across large climate gradients in northern South America is related to water availability but not with temperature.

Understanding and predicting the likely response of ecosystems to climate change are crucial challenges for ecology and for conservation biology. Nowhere is this challenge greater than in the tropics as these forests store more than half the total atmospheric carbon stock in their biomass. Biomass is determined by the balance between biomass inputs (i.e., growth) and outputs (mortality). We can expect therefore that conditions that favor high growth rates, such as abundant water supply, warmth, and nutrient-rich soils will tend to correlate with high biomass stocks. Our main objective is to describe the patterns of above ground biomass (AGB) stocks across major tropical forests across climatic gradients in Northwestern South America. We gathered data from 200 plots across the region, at elevations ranging between 0 to 3400 m. We estimated AGB based on allometric equations and values for stem density, basal area, and wood density weighted by basal area at the plot-level. We used two groups of climatic variables, namely mean annual temperature and actual evapotranspiration as surrogates of environmental energy, and annual precipitation, precipitation seasonality, and water availability as surrogates of water availability. We found that AGB is more closely related to water availability variables than to energy variables. In northwest South America, water availability influences carbon stocks principally by determining stand structure, i.e. basal area. When water deficits increase in tropical forests we can expect negative impact on biomass and hence carbon storage.

Evolutionary heritage influences Amazon tree ecology.

Lineages tend to retain ecological characteristics of their ancestors through time. However, for some traits, selection during evolutionary history may have also played a role in determining trait values. To address the relative importance of these processes requires large-scale quantification of traits and evolutionary relationships among species. The Amazonian tree flora comprises a high diversity of angiosperm lineages and species with widely differing life-history characteristics, providing an excellent system to investigate the combined influences of evolutionary heritage and selection in determining trait variation. We used trait data related to the major axes of life-history variation among tropical trees (e.g. growth and mortality rates) from 577 inventory plots in closed-canopy forest, mapped onto a phylogenetic hypothesis spanning more than 300 genera including all major angiosperm clades to test for evolutionary constraints on traits. We found significant phylogenetic signal (PS) for all traits, consistent with evolutionarily related genera having more similar characteristics than expected by chance. Although there is also evidence for repeated evolution of pioneer and shade tolerant life-history strategies within independent lineages, the existence of significant PS allows clearer predictions of the links between evolutionary diversity, ecosystem function and the response of tropical forests to global change.

Variation in stem mortality rates determines patterns of above-ground biomass in Amazonian forests: implications for dynamic global vegetation models.

Understanding the processes that determine above-ground biomass (AGB) in Amazonian forests is important for predicting the sensitivity of these ecosystems to environmental change and for designing and evaluating dynamic global vegetation models (DGVMs). AGB is determined by inputs from woody productivity [woody net primary productivity (NPP)] and the rate at which carbon is lost through tree mortality. Here, we test whether two direct metrics of tree mortality (the absolute rate of woody biomass loss and the rate of stem mortality) and/or woody NPP, control variation in AGB among 167 plots in intact forest across Amazonia. We then compare these relationships and the observed variation in AGB and woody NPP with the predictions of four DGVMs. The observations show that stem mortality rates, rather than absolute rates of woody biomass loss, are the most important predictor of AGB, which is consistent with the importance of stand size structure for determining spatial variation in AGB. The relationship between stem mortality rates and AGB varies among different regions of Amazonia, indicating that variation in wood density and height/diameter relationships also influences AGB. In contrast to previous findings, we find that woody NPP is not correlated with stem mortality rates and is weakly positively correlated with AGB. Across the four models, basin-wide average AGB is similar to the mean of the observations. However, the models consistently overestimate woody NPP and poorly represent the spatial patterns of both AGB and woody NPP estimated using plot data. In marked contrast to the observations, DGVMs typically show strong positive relationships between woody NPP and AGB. Resolving these differences will require incorporating forest size structure, mechanistic models of stem mortality and variation in functional composition in DGVMs.

Ecosystem heterogeneity determines the ecological resilience of the Amazon to climate change.

Amazon forests, which store ∼ 50% of tropical forest carbon and play a vital role in global water, energy, and carbon cycling, are predicted to experience both longer and more intense dry seasons by the end of the 21st century. However, the climate sensitivity of this ecosystem remains uncertain: several studies have predicted large-scale die-back of the Amazon, whereas several more recent studies predict that the biome will remain largely intact. Combining remote-sensing and ground-based observations with a size- and age-structured terrestrial ecosystem model, we explore the sensitivity and ecological resilience of these forests to changes in climate. We demonstrate that water stress operating at the scale of individual plants, combined with spatial variation in soil texture, explains observed patterns of variation in ecosystem biomass, composition, and dynamics across the region, and strongly influences the ecosystem's resilience to changes in dry season length. Specifically, our analysis suggests that in contrast to existing predictions of either stability or catastrophic biomass loss, the Amazon forest's response to a drying regional climate is likely to be an immediate, graded, heterogeneous transition from high-biomass moist forests to transitional dry forests and woody savannah-like states. Fire, logging, and other anthropogenic disturbances may, however, exacerbate these climate change-induced ecosystem transitions.

Drought sensitivity of the Amazon rainforest.

Amazon forests are a key but poorly understood component of the global carbon cycle. If, as anticipated, they dry this century, they might accelerate climate change through carbon losses and changed surface energy balances. We used records from multiple long-term monitoring plots across Amazonia to assess forest responses to the intense 2005 drought, a possible analog of future events. Affected forest lost biomass, reversing a large long-term carbon sink, with the greatest impacts observed where the dry season was unusually intense. Relative to pre-2005 conditions, forest subjected to a 100-millimeter increase in water deficit lost 5.3 megagrams of aboveground biomass of carbon per hectare. The drought had a total biomass carbon impact of 1.2 to 1.6 petagrams (1.2 x 10(15) to 1.6 x 10(15) grams). Amazon forests therefore appear vulnerable to increasing moisture stress, with the potential for large carbon losses to exert feedback on climate change.