Time-Series Generative Adversarial Network Approach of Deep Learning Improves Seizure Detection From the Human Thalamic SEEG.

Seizure detection algorithms are often optimized to detect seizures from the epileptogenic cortex. However, in non-localizable epilepsies, the thalamus is frequently targeted for neuromodulation. Developing a reliable seizure detection algorithm from thalamic SEEG may facilitate the translation of closed-loop neuromodulation. Deep learning algorithms promise reliable seizure detectors, but the major impediment is the lack of larger samples of curated ictal thalamic SEEG needed for training classifiers. We aimed to investigate if synthetic data generated by temporal Generative Adversarial Networks (TGAN) can inflate the sample size to improve the performance of a deep learning classifier of ictal and interictal states from limited samples of thalamic SEEG. Thalamic SEEG from 13 patients (84 seizures) was obtained during stereo EEG evaluation for epilepsy surgery. Overall, TGAN generated synthetic data augmented the performance of the bidirectional Long-Short Term Memory (BiLSTM) performance in classifying thalamic ictal and baseline states. Adding synthetic data improved the accuracy of the detection model by 18.5%. Importantly, this approach can be applied to classify electrographic seizure onset patterns or develop patient-specific seizure detectors from implanted neuromodulation devices.

Compression-Complexity Measures for Analysis and Classification of Coronaviruses.

Finding a vaccine or specific antiviral treatment for a global pandemic of virus diseases (such as the ongoing COVID-19) requires rapid analysis, annotation and evaluation of metagenomic libraries to enable a quick and efficient screening of nucleotide sequences. Traditional sequence alignment methods are not suitable and there is a need for fast alignment-free techniques for sequence analysis. Information theory and data compression algorithms provide a rich set of mathematical and computational tools to capture essential patterns in biological sequences. In this study, we investigate the use of compression-complexity (Effort-to-Compress or ETC and Lempel-Ziv or LZ complexity) based distance measures for analyzing genomic sequences. The proposed distance measure is used to successfully reproduce the phylogenetic trees for a mammalian dataset consisting of eight species clusters, a set of coronaviruses belonging to group I, group II, group III, and SARS-CoV-1 coronaviruses, and a set of coronaviruses causing COVID-19 (SARS-CoV-2), and those not causing COVID-19. Having demonstrated the usefulness of these compression complexity measures, we employ them for the automatic classification of COVID-19-causing genome sequences using machine learning techniques. Two flavors of SVM (linear and quadratic) along with linear discriminant and fine K Nearest Neighbors classifer are used for classification. Using a data set comprising 1001 coronavirus sequences (causing COVID-19 and those not causing COVID-19), a classification accuracy of 98% is achieved with a sensitivity of 95% and a specificity of 99.8%. This work could be extended further to enable medical practitioners to automatically identify and characterize coronavirus strains and their rapidly growing mutants in a fast and efficient fashion.

Machine learning approach to detect focal-onset seizures in the human anterior nucleus of the thalamus.

Objective.There is an unmet need to develop seizure detection algorithms from brain regions outside the epileptogenic cortex. The study aimed to demonstrate the feasibility of classifying seizures and interictal states from local field potentials (LFPs) recorded from the human thalamus-a subcortical region remote to the epileptogenic cortex. We tested the hypothesis that spectral and entropy-based features extracted from LFPs recorded from the anterior nucleus of the thalamus (ANT) can distinguish its state of ictal recruitment from other interictal states (including awake, sleep).Approach. Two supervised machine learning tools (random forest and the random kitchen sink) were used to evaluate the performance of spectral (discrete wavelet transform-DWT), and time-domain (multiscale entropy-MSE) features in classifying seizures from interictal states in patients undergoing stereo-electroencephalography (EEG) evaluation for epilepsy surgery. Under the supervision of IRB, field potentials were recorded from the ANT in consenting adults with drug-resistant temporal lobe epilepsy. Seizures were confirmed in the ANT using line-length and visual inspection. Wilcoxon rank-sum method was used to test the differences in spectral patterns between seizure and interictal (awake and sleep) states.Main results.79 seizures (10 patients) and 158 segments (approx. 4 h) of interictal stereo-EEG data were analyzed. The mean seizure detection latencies with line length in the ANT varied between seizure types (range 5-34 s). However, the DWT and MSE in the ANT showed significant changes for all seizure types within the first 20 s after seizure onset. The random forest (accuracy 93.9% and false-positive 4.6%) and the random kitchen sink (accuracy 97.3% and false-positive 1.8%) classified seizures and interictal states.Significance.These results suggest that features extracted from the thalamic LFPs can be trained to detect seizures that can be used for monitoring seizure counts and for closed-loop seizure abortive interventions.

A Viterbi decoder and its hardware Trojan models: an FPGA-based implementation study.

Integrated circuits may be vulnerable to hardware Trojan attacks during its design or fabrication phases. This article is a case study of the design of a Viterbi decoder and the effect of hardware Trojans on a coded communication system employing the Viterbi decoder. Design of a Viterbi decoder and possible hardware Trojan models for the same are proposed. An FPGA-based implementation of the decoder and the associated Trojan circuits have been discussed. The noise-added encoded input data stream is stored in the block RAM of the FPGA and the decoded data stream is monitored on the PC through an universal asynchronous receiver transmitter interface. The implementation results show that there is barely any change in the LUTs used (0.5%) and power dissipation (3%) due to the insertion of the proposed Trojan circuits, thus establishing the surreptitious nature of the Trojan. In spite of the fact that the Trojans cause negligible changes in the circuit parameters, there are significant changes in the bit error rate (BER) due to the presence of Trojans. In the absence of Trojans, BER drops down to zero for signal to noise rations (SNRs) higher than 6 dB, but with the presence of Trojans, BER doesn't reduce to zero even at a very high SNRs. This is true even with the Trojan being activated only once during the entire duration of the transmission.

Vagus Nerve Stimulation Modulates Complexity of Heart Rate Variability Differently during Sleep and Wakefulness.

Progressive loss of heart rate variability (HRV) and complexity are associated with increased risk of mortality in patients with cardiovascular disease and are a candidate marker for patients at risk of sudden cardiac death. HRV is influenced by the cardiac autonomic nervous system (ANS), although it is unclear which arm of the ANS (sympathetic or parasympathetic) needs to be perturbed to increase the complexity of HRV. In this case-control study, we have analyzed the relation between modulation of vagus nerve stimulation (VNS) and changes in complexity of HRV as a function of states of vigilance. We hypothesize that VNS - being a preferential activator of the parasympathetic system - will decrease the heart rate (HR) and increase the complexity of HRV maximum during sleep. The electrocardiogram (EKG) obtained from a 37-year-old, right-handed male with known intractable partial epilepsy and left therapeutic VNS was analyzed during wakefulness and sleep with VNS ON and OFF states. Age-matched control EKG was obtained from five participants (three with intractable epilepsy and two without epilepsy) that had no VNS implant. The study demonstrated the following: (1) VNS increased the complexity of HRV during sleep and decreased it during wakefulness. (2) An increase in parasympathetic tone is associated with increased complexity of HRV even in the presence of decreased HR. These results need to be replicated in a larger cohort before developing patterned stimulation using VNS to stabilize cardiac dysautonomia and prevent fatal arrhythmias.

Aging and cardiovascular complexity: effect of the length of RR tachograms.

As we age, our hearts undergo changes that result in a reduction in complexity of physiological interactions between different control mechanisms. This results in a potential risk of cardiovascular diseases which are the number one cause of death globally. Since cardiac signals are nonstationary and nonlinear in nature, complexity measures are better suited to handle such data. In this study, three complexity measures are used, namely Lempel-Ziv complexity (LZ), Sample Entropy (SampEn) and Effort-To-Compress (ETC). We determined the minimum length of RR tachogram required for characterizing complexity of healthy young and healthy old hearts. All the three measures indicated significantly lower complexity values for older subjects than younger ones. However, the minimum length of heart-beat interval data needed differs for the three measures, with LZ and ETC needing as low as 10 samples, whereas SampEn requires at least 80 samples. Our study indicates that complexity measures such as LZ and ETC are good candidates for the analysis of cardiovascular dynamics since they are able to work with very short RR tachograms.