Magnetic state of the alpha 3 center of cytochrome c oxidase and some of its derivatives.

The temperature dependence of the magnetic susceptibility was used to investigate the nature of the coupling between cytochrome alpha 3 and CuB in resting and oxidized cyanide- and formate-bound cytochrome oxidase. Resting and formate-bound enzymes were found to have strong antiferromagnetic coupling with an S = 5/2 cytochrome alpha 3, results that were independent of the dispersing detergent and the enzyme isolation method. The cyanide-bound enzyme was heterogeneous, with a minor fraction showing intermediate strength antiferromagnetic coupling. The magnitude of this coupling was independent of the enzyme isolation method and depended moderately on the identity of the dispersing detergent. The major fraction of the cyanide-bound enzyme had a lowest energy state of Ms = 0. The coupling constant for this fraction did not depend on the isolation technique or on the identity of the dispersing detergent. The use of glucose-glucose oxidase to deoxygenate samples influenced the susceptibility behavior of some preparations of both the resting and formate-bound enzymes, with results indicating an S = 3/2 cytochrome alpha 3 in the resting enzyme samples. Retention of a 417-nm Soret band for formate-bound enzyme concomitant with peroxide-induced changes in susceptibility behavior indicates different sites of enzyme interactions for the formate ion and hydrogen peroxide.

Reduction of cytochrome oxidase by 5,10-dihydro-5-methylphenazine: kinetic parameters from rapid-scanning stopped-flow experiments.

The kinetics of the reduction of resting cytochrome oxidase and of its cyanide complex by 5,10-dihydro-5- methylphenazine (MPH) have been characterized by rapid-scan and fixed-wavelength stopped-flow spectrophotometry in the Soret, visible, and near-IR spectral regions. In this study, we focused on a form of the resting enzyme that is characterized by a Soret absorption maximum at 424 nm. These experiments complement earlier work on the reduction of a 418 nm absorbing form of the resting enzyme [ Halaka , F.G., Babcock , G. T., & Dye, J. L. (1981) J. Biol. Chem. 256, 1084-1087]. The reduction of cytochrome a is accomplished in a second-order reaction with a rate constant of 3 X 10(5) M-1 s-1. The reduction of the 830-nm absorber, Cua, is closely coupled to but lags the reduction of cytochrome a; we have resolved a rate constant of about 20 s-1 for the copper reduction. The reduction of cytochrome a proceeds with a rate constant that is nearly independent of the spectral properties of the resting enzyme and of the ligation state of cytochrome a3. The reduction of cytochrome a3 occurs by slow, intramolecular electron transfer. We have resolved two phases for this process that have rate constants of approximately 0.2 s-1 and approximately 0.02 s-1 for both the 418- and 424-nm forms of the resting enzyme. It appears, therefore, that spectroscopic heterogeneity at the cytochrome a3 site in the resting enzyme exerts very little influence on the kinetics of the anaerobic reduction of the oxidase metal centers. From this we conclude that the rate of electron transfer to the a3 site is probably controlled by the protein conformation and not primarily by local factors within the a3 environment.