Interactions between Soil Bacterial Diversity and Plant-Parasitic Nematodes in Soybean Plants.

Plant-parasitic nematodes are an important group of pests causing economic losses in agriculture worldwide. Among the plant-parasitic nematodes, the root-knot (Meloidogyne spp.) and root-lesion nematodes (Pratylenchus spp.) are considered the two most important ones affecting soybeans. In general, they damage soybean roots, causing a reduction of about one-third in productivity. The soil microbial community can exert a suppressive effect on the parasitism of plant-parasitic nematodes. Here, we investigated the effects of soil bacterial diversity on Meloidogyne javanica (Meloidogyne-assay) and Pratylenchus brachyurus (Pratylenchus-assay) suppression by manipulating microbial diversity using the dilution-to-extinction approach in two independent experiments under controlled conditions. Furthermore, we recorded the changes in the soil microbial community induced by plant-parasitic nematode infection. In Meloidogyne-assay, microbial diversity reduced the population density of M. javanica and improved plant performance. In Pratylenchus-assay, microbial diversity sustained the performance of soybean plants even at high levels of P. brachyurus parasitism. Each nematode population affected the relative abundance of different bacterial genera and altered the core microbiome of key groups within the bacterial community. Our findings provide fundamental insights into the interactions between soil bacterial diversity and plant-parasitic nematodes in soybean plants. IMPORTANCE Root-knot and root-lesion nematodes cause losses of billions of dollars every year to agriculture worldwide. Traditionally, they are controlled by using chemical nematicides, which in general have a negative impact on the environment and human health. Fortunately, the soil microbial community may suppress these pests, acting as an environmentally friendly alternative to control nematodes. However, the effects of soil microbial diversity on the parasitism of plant-parasitic nematodes still poorly understood. In this study, we provide fundamental insight into the interactions between soil bacterial diversity and plant-parasitic nematodes in soybean plants, which may be useful for the development of new strategies to control these phytopathogens.

Free-living diazotrophs drive castor bean nitrogen input in tropical semiarid soils / Diazotróficas de vida livre conduzem a entrada de nitrogênio em solos cultivados com mamona no semiárido

There are few studies of microbial diversity in castor bean soils in tropical semiarid environmental. Castor bean products have been widely used around the world justifying the commercial importance of ricinoculture in Brazil northeastern semiarid. There is no fertilization or maintenance of litter on the soils from the present study, so we hypothesized that the free-living diazotrophs microorganisms drive the nitrogen (N) input into these soils. We evaluated the communities structure and diversity of diazotrophs in tropical semiarid soils with i-Castor bean 50 years of cultivation intercropping with maize (CB-50); ii-Only Castor bean 10 years of cultivation (CB-10) and iii-soil under Caatinga vegetation (CAA). Nitrogenase enzyme activity was performed by the acetylene reduction assay (ARA) and the community profile of nifH gene was separated by denaturing gradient gel polyacrylamide electrophoresis (DGGE). Diazotrophs diversity was estimated by the Shannon (H) and Simpson (D) indexes. Based on the maintenance of soil N stocks and N-microbial biomass over time, the activity of free-living diazotrophs was determinant in the N-input into these soils. The nifH gene was present and its profiles grouped the CB-50 with CAA treatments, so it reinforced the N-fixing by diazotrophs, which presented a greater diversity in the cultivated soils, even after the land use change for the castor bean implementation.(AU)

Existem poucos estudos sobre a diversidade microbiana em solos de mamona no ambiente semiárido tropical. Os produtos de mamona têm sido amplamente utilizados em todo o mundo e justificam a importância comercial da ricinocultura no semiárido nordestino brasileiro. Como não há qualquer tipo de fertilização, ou manutenção de resíduos da cultura nos solos de mamona do presente estudo, presume-se que a comunidade de diazotróficas forneça o nitrogênio (N) nesses solos. Avaliou-se a estrutura e diversidade de comunidades de diazotróficas em solos de mamona do semiárido tropical em: i-Mamona com 50 anos de cultivo, consorciada com milho (CB-50); ii-Mamona com 10 anos de cultivo sem consórcio (CB-10) e iii-solo sob vegetação de Caatinga preservada (CAA). Realizou-se avaliação de redução do acetileno a etileno (ARA) e o perfil do gene nifH foi separado por eletroforese em gel de poliacrilamida com gradiente desnaturante (DGGE). A diversidade de diazotróficas foi estimada pelos índices de Shannon (H) e Simpson (D). Com base na manutenção dos estoques de nitrogênio no solo e da biomassa microbiana ao longo do tempo, a atividade dos diazotróficos de vida livre foi determinante na entrada de N nesses solos. O gene nifH esteve presente e seus perfis agruparam os tratamentos CB-50 com CAA, reforçando a fixação de N pelos diazotróficos, os quais apresentaram maior diversidade nos solos cultivados, mesmo após a mudança de uso da terra para o plantio de mamona.(AU)

Free-living diazotrophs drive castor bean nitrogen input in tropical semiarid soils / Diazotróficas de vida livre conduzem a entrada de nitrogênio em solos cultivados com mamona no semiárido

There are few studies of microbial diversity in castor bean soils in tropical semiarid environmental. Castor bean products have been widely used around the world justifying the commercial importance of ricinoculture in Brazil’ northeastern semiarid. There is no fertilization or maintenance of litter on the soils from the present study, so we hypothesized that the free-living diazotrophs microorganisms drive the nitrogen (N) input into these soils. We evaluated the communities’ structure and diversity of diazotrophs in tropical semiarid soils with i-Castor bean 50 years of cultivation intercropping with maize (CB-50); ii-Only Castor bean 10 years of cultivation (CB-10) and iii-soil under Caatinga vegetation (CAA). Nitrogenase enzyme activity was performed by the acetylene reduction assay (ARA) and the community profile of nifH gene was separated by denaturing gradient gel polyacrylamide electrophoresis (DGGE). Diazotrophs diversity was estimated by the Shannon (H’) and Simpson (D) indexes. Based on the maintenance of soil N stocks and N-microbial biomass over time, the activity of free-living diazotrophs was determinant in the N-input into these soils. The nifH gene was present and its profiles grouped the CB-50 with CAA treatments, so it reinforced the N-fixing by diazotrophs, which presented a greater diversity in the cultivated soils, even after the land use change for the castor bean implementation.

Existem poucos estudos sobre a diversidade microbiana em solos de mamona no ambiente semiárido tropical. Os produtos de mamona têm sido amplamente utilizados em todo o mundo e justificam a importância comercial da ricinocultura no semiárido nordestino brasileiro. Como não há qualquer tipo de fertilização, ou manutenção de resíduos da cultura nos solos de mamona do presente estudo, presume-se que a comunidade de diazotróficas forneça o nitrogênio (N) nesses solos. Avaliou-se a estrutura e diversidade de comunidades de diazotróficas em solos de mamona do semiárido tropical em: i-Mamona com 50 anos de cultivo, consorciada com milho (CB-50); ii-Mamona com 10 anos de cultivo sem consórcio (CB-10) e iii-solo sob vegetação de Caatinga preservada (CAA). Realizou-se avaliação de redução do acetileno a etileno (ARA) e o perfil do gene nifH foi separado por eletroforese em gel de poliacrilamida com gradiente desnaturante (DGGE). A diversidade de diazotróficas foi estimada pelos índices de Shannon (H’) e Simpson (D). Com base na manutenção dos estoques de nitrogênio no solo e da biomassa microbiana ao longo do tempo, a atividade dos diazotróficos de vida livre foi determinante na entrada de N nesses solos. O gene nifH esteve presente e seus perfis agruparam os tratamentos CB-50 com CAA, reforçando a fixação de N pelos diazotróficos, os quais apresentaram maior diversidade nos solos cultivados, mesmo após a mudança de uso da terra para o plantio de mamona.