Organic farming reduces pesticide load in a bird of prey.

Human activities have led to the contamination of all environmental compartments worldwide, including bird species. In birds, both the environment and maternal transfer lead to high inter-brood variability in contamination levels of pollutants, whereas intra-brood variability is generally low. However, most existing studies focused on heavy metals or persistent compounds and none, to our knowledge, addressed the variability in contamination levels of multiple pesticides and the factors influencing it. In this study, the number of pesticides detected (of 104 compounds searched) and the sum of their concentrations in the blood of 55 Montagu's harrier (Circus pygargus) nestlings from 22 nests sampled in 2021 were used as metrics of contamination levels. We investigated the effect of organic farming at the size of male's home range (i.e., 14 km2) and chicks' sex and hatching order on contamination levels. We did not find a difference between inter-brood and intra-brood variability in pesticide contamination levels, suggesting a different exposure of siblings through food items. While chicks' sex or rank did not affect their contamination level, we found that the percentage of organic farming around the nests significantly decreased the number of pesticides detected, although it did not decrease the total concentrations. This finding highlights the potential role of organic farming in reducing the exposure of birds to a pesticide cocktail.

Distance functions of carabids in crop fields depend on functional traits, crop type and adjacent habitat: a synthesis.

Natural pest and weed regulation are essential for agricultural production, but the spatial distribution of natural enemies within crop fields and its drivers are mostly unknown. Using 28 datasets comprising 1204 study sites across eight Western and Central European countries, we performed a quantitative synthesis of carabid richness, activity densities and functional traits in relation to field edges (i.e. distance functions). We show that distance functions of carabids strongly depend on carabid functional traits, crop type and, to a lesser extent, adjacent non-crop habitats. Richness of both carnivores and granivores, and activity densities of small and granivorous species decreased towards field interiors, whereas the densities of large species increased. We found strong distance decays in maize and vegetables whereas richness and densities remained more stable in cereals, oilseed crops and legumes. We conclude that carabid assemblages in agricultural landscapes are driven by the complex interplay of crop types, adjacent non-crop habitats and further landscape parameters with great potential for targeted agroecological management. In particular, our synthesis indicates that a higher edge-interior ratio can counter the distance decay of carabid richness per field and thus likely benefits natural pest and weed regulation, hence contributing to agricultural sustainability.

Tracking seabird migration in the tropical Indian Ocean reveals basin-scale conservation need.

Understanding marine predator distributions is an essential component of arresting their catastrophic declines.1,2,3,4 In temperate, polar, and upwelling seas, predictable oceanographic features can aggregate migratory predators, which benefit from site-based protection.5,6,7,8 In more oligotrophic tropical waters, however, it is unclear whether environmental conditions create similar multi-species hotspots. We track the non-breeding movements and habitat preferences of a tropical seabird assemblage (n = 348 individuals, 9 species, and 10 colonies in the western Indian Ocean), which supports globally important biodiversity.9,10,11,12 We mapped species richness from tracked populations and then predicted the same diversity measure for all known Indian Ocean colonies. Most species had large non-breeding ranges, low or variable residency patterns, and specific habitat preferences. This in turn revealed that maximum species richness covered >3.9 million km2, with no focused aggregations, in stark contrast to large-scale tracking studies in all other ocean basins.5,6,7,13,14 High species richness was captured by existing marine protected areas (MPAs) in the region; however, most occurred in the unprotected high seas beyond national jurisdictions. Seabirds experience cumulative anthropogenic impacts13 and high mortality15,16 during non-breeding. Therefore, our results suggest that seabird conservation in the tropical Indian Ocean requires an ocean-wide perspective, including high seas legislation.17 As restoration actions improve the outlook for tropical seabirds on land18,19,20,21,22 and environmental change reshapes the habitats that support them at sea,15,16 appropriate marine conservation will be crucial for their long-term recovery and whole ecosystem restoration.

Both long-term grasslands and crop diversity are needed to limit pest and weed infestations in agricultural landscapes.

Increasing landscape heterogeneity has been suggested to be an important strategy to strengthen natural pest control in crops, especially through enhancing the amount of seminatural habitats. Increasing crop diversity is also a promising strategy to complement or replace seminatural habitat when seminatural habitat is scarce. However, their relative or possibly interactive effects on pest and weed infestation remain poorly investigated, and the role of different types of seminatural habitats has been understudied. Using an extensive sampling effort in 974 arable fields across 7 y, we evaluated the separate and interactive effects of crop diversity (seven arable crop types) and the amount of four types of seminatural habitats (meadows, hay, forests, and hedgerows) in the landscape on pest and weed control. Meadows and crop diversity, respectively, supported insect pest and weed control services in agricultural landscapes through a complementarity effect. Crop diversity increased weed seed predation rate (by 16%) and reduced weed infestation (by 6%), whereas long-term grasslands (to a much higher degree than hay or woody habitats) increased insect pest predation rates (by 23%) and reduced pest infestation (by 19%) in most arable crops. Our results demonstrate that diversification of the agricultural landscape requires long-term grasslands as well as improved crop diversity to ensure the delivery of efficient pest and weed control services.

Biodiversity and pollination benefits trade off against profit in an intensive farming system.

Agricultural expansion and intensification have boosted global food production but have come at the cost of environmental degradation and biodiversity loss. Biodiversity-friendly farming that boosts ecosystem services, such as pollination and natural pest control, is widely being advocated to maintain and improve agricultural productivity while safeguarding biodiversity. A vast body of evidence showing the agronomic benefits of enhanced ecosystem service delivery represent important incentives to adopt practices enhancing biodiversity. However, the costs of biodiversity-friendly management are rarely taken into account and may represent a major barrier impeding uptake by farmers. Whether and how biodiversity conservation, ecosystem service delivery, and farm profit can go hand in hand is unknown. Here, we quantify the ecological, agronomic, and net economic benefits of biodiversity-friendly farming in an intensive grassland-sunflower system in Southwest France. We found that reducing land-use intensity on agricultural grasslands drastically enhances flower availability and wild bee diversity, including rare species. Biodiversity-friendly management on grasslands furthermore resulted in an up to 17% higher revenue on neighboring sunflower fields through positive effects on pollination service delivery. However, the opportunity costs of reduced grassland forage yields consistently exceeded the economic benefits of enhanced sunflower pollination. Our results highlight that profitability is often a key constraint hampering adoption of biodiversity-based farming and uptake critically depends on society's willingness to pay for associated delivery of public goods such as biodiversity.

Global assessment of marine plastic exposure risk for oceanic birds.

Plastic pollution is distributed patchily around the world's oceans. Likewise, marine organisms that are vulnerable to plastic ingestion or entanglement have uneven distributions. Understanding where wildlife encounters plastic is crucial for targeting research and mitigation. Oceanic seabirds, particularly petrels, frequently ingest plastic, are highly threatened, and cover vast distances during foraging and migration. However, the spatial overlap between petrels and plastics is poorly understood. Here we combine marine plastic density estimates with individual movement data for 7137 birds of 77 petrel species to estimate relative exposure risk. We identify high exposure risk areas in the Mediterranean and Black seas, and the northeast Pacific, northwest Pacific, South Atlantic and southwest Indian oceans. Plastic exposure risk varies greatly among species and populations, and between breeding and non-breeding seasons. Exposure risk is disproportionately high for Threatened species. Outside the Mediterranean and Black seas, exposure risk is highest in the high seas and Exclusive Economic Zones (EEZs) of the USA, Japan, and the UK. Birds generally had higher plastic exposure risk outside the EEZ of the country where they breed. We identify conservation and research priorities, and highlight that international collaboration is key to addressing the impacts of marine plastic on wide-ranging species.

Hedgerows interact with forests to shape the abundance of mesopredators and their predation rate on eggs in farmland landscapes.

Nest predation is the main cause of reproductive failure, particularly in ground-nesting birds on farmlands. Understanding the links between nest predation and habitat change can help design effective management schemes to constrain the negative impact of predation pressure on birds. However, the mechanisms underlying the relationships between landscape attributes, predator distribution, and nest predation are still unclear. Here, we use an experimental approach to examine the effects of distance to the hedgerow as well as hedgerow and forest densities on the abundance of major mesopredators of ground nests of our study area (i.e., corvids) and on the predation rate of artificial ground nests (n = 2576). We found evidence that landscape configuration influenced predation patterns differently depending on the predator species. Nest predation by corvids was more likely in homogeneous and open agricultural landscapes with a low density of forest and hedgerows, whereas predation by other predators was more likely close to hedgerows. Nest predation by corvids and the abundance of corvids also tended to be lower in landscapes dominated by grasslands. Other variables such as road density and distance to human settlements had contrasted effects on the likelihood of a nest being depredated by corvids, i.e., no effect with proximity to human settlements and decreasing trend with road density. Altogether, our results suggest that landscape features interact with mesopredator distribution and their predation rates of ground nests. Therefore, from a conservation and management perspective, a heterogeneous agricultural landscape that includes a mixture of crops associated with patches of forests, hedgerows, and grasslands offering alternative food to generalist predators should contribute to reducing ground-nesting bird predation.

Neonicotinoids: Still present in farmland birds despite their ban.

Neonicotinoids (neonics) are the most widely used insecticides worldwide and are considered to be of low risk to non-target organisms such as vertebrates. Further, they are reported to be rapidly excreted and metabolized, reducing their potential toxicity. Nevertheless, growing evidence of adverse effects of neonics on farmland bird species raise questions about the purported harmless nature of these pesticides. We attempted to search for pesticide residues in species of different trophic levels and at different life stages, by using multiple bird monitoring programs on a Long-Term Socio-Ecological Research (LTSER) platform. Three passerine birds-the blackbird (Turdus merula), cirl bunting (Emberiza cirlus), and common nightingale (Luscinia megarhynchos)-that feed on seeds and invertebrates were monitored during their reproductive period, and the grey partridge (Perdix perdix) that feeds on seeds was monitored during its wintering period. We also monitored chicks of an apex predator-the Montagu's harrier (Circus pygargus)-that preys mostly upon common voles but also upon insects. We found that the birds' blood samples showed presence of residues of five neonics: three banned since 2018 in France-clothianidin, thiacloprid, and thiamethoxam-and two-dinotefuran and nitenpyram-used for veterinary purposes only. While none of these neonics was detected in blackbirds, all were present in grey partridges. Clothianidin was detected in all species, except blackbirds. Concentrations of the three banned neonics were similar or higher than concentrations found in birds monitored elsewhere before the ban. These findings raise questions about the persistence of neonics within the environment and the mode of exposure to wild fauna. Future investigations on the sublethal effects of these neonics on life-history traits of these farmland birds may help in providing a better understanding of the effects of exposure of bird populations to these insecticides, and also to the consequent effect on human health.

Pervasive exposure of wild small mammals to legacy and currently used pesticide mixtures in arable landscapes.

Knowledge gaps regarding the potential role of pesticides in the loss of agricultural biodiversity worldwide and mixture-related issues hamper proper risk assessment of unintentional impacts of pesticides, rendering essential the monitoring of wildlife exposure to these compounds. Free-ranging mammal exposure to legacy (Banned and Restricted: BRPs) and currently used (CUPs) pesticides was investigated, testing the hypotheses of: (1) a background bioaccumulation for BRPs whereas a "hot-spot" pattern for CUPs, (2) different contamination profiles between carnivores and granivores/omnivores, and (3) the role of non-treated areas as refuges towards exposure to CUPs. Apodemus mice (omnivore) and Crocidura shrews (insectivore) were sampled over two French agricultural landscapes (n = 93). The concentrations of 140 parent chemicals and metabolites were screened in hair samples. A total of 112 compounds were detected, showing small mammal exposure to fungicides, herbicides and insecticides with 32 to 65 residues detected per individual (13-26 BRPs and 18-41 CUPs). Detection frequencies exceeded 75% of individuals for 13 BRPs and 25 CUPs. Concentrations above 10 ng/g were quantified for 7 BRPs and 29 CUPs (in 46% and 72% of individuals, respectively), and above 100 ng/g for 10 CUPs (in 22% of individuals). Contamination (number of compounds or concentrations) was overall higher in shrews than rodents and higher in animals captured in hedgerows and cereal crops than in grasslands, but did not differ significantly between conventional and organic farming. A general, ubiquitous contamination by legacy and current pesticides was shown, raising issues about exposure pathways and impacts on ecosystems. We propose a concept referred to as "biowidening", depicting an increase of compound diversity at higher trophic levels. This work suggests that wildlife exposure to pesticide mixtures is a rule rather than an exception, highlighting the need for consideration of the exposome concept and questioning appropriateness of current risk assessment and mitigation processes.

Pesticide impacts on avian species with special reference to farmland birds: a review.

For decades, we have observed a major biodiversity crisis impacting all taxa. Avian species have been particularly well monitored over the long term, documenting their declines. In particular, farmland birds are decreasing worldwide, but the contribution of pesticides to their decline remains controversial. Most studies addressing the effects of agrochemicals are limited to their assessment under controlled laboratory conditions, the determination of lethal dose 50 (LD50) values and testing in a few species, most belonging to Galliformes. They often ignore the high interspecies variability in sensitivity, delayed sublethal effects on the physiology, behaviour and life-history traits of individuals and their consequences at the population and community levels. Most importantly, they have entirely neglected to test for the multiple exposure pathways to which individuals are subjected in the field (cocktail effects). The present review aims to provide a comprehensive overview for ecologists, evolutionary ecologists and conservationists. We aimed to compile the literature on the effects of pesticides on bird physiology, behaviour and life-history traits, collecting evidence from model and wild species and from field and lab experiments to highlight the gaps that remain to be filled. We show how subtle nonlethal exposure might be pernicious, with major consequences for bird populations and communities. We finally propose several prospective guidelines for future studies that may be considered to meet urgent needs.

Feeding on grains containing pesticide residues is detrimental to offspring development through parental effects in grey partridge.

Numerous toxicological studies have shown that ingestion of pesticides can induce physiological stress in breeding birds, with adverse consequences on egg laying parameters and offspring quality through parental effects. However, previous studies do not mimic current levels of pesticide residues in typical landscapes, and they do not consider potential cocktail effects of pesticides as they occur in the wild. Herein, we explored whether realistic pesticide exposure affected reproduction parameters and offspring condition through parental effects in Grey partridge. We fed 24 breeding pairs with either seeds from conventional agriculture crops treated with various pesticides during cropping, or organic grains without pesticide residues as controls. The conventional and organic grain diets mimicked food options potentially encountered by wild birds in the field. The results showed that ingesting low pesticide doses over a long period had consequences on reproduction and offspring quality without altering mortality in parents or chicks. Compared with organic pairs, conventional pairs yielded smaller chicks at hatching that had a lower body mass index at 24 days old. Additionally, these chicks displayed lower haematocrit when body mass index was higher. Therefore, ingestion of conventional grains by parents resulted in chronic exposure to pesticide residues, even at low doses, and this had detrimental consequences on offspring. These results demonstrate a sublethal effect of pesticide residues through parental effects. The consequences of parental exposure on chicks might partly explain the decline in wild Grey partridge populations, which raises questions for avian conservation and demography if current agrosystem approaches are continued.

Detectability and predator strategy affect egg depredation rates: Implications for mitigating nest depredation in farmlands.

Predation is a major evolutionary force in animal ecology. Mechanisms by which prey coloration provides camouflage has been widely studied. However, predator response to prey camouflage and concealment has received less attention. Understanding vegetation structure effect on depredation success could help managers design strategies to mitigate the depredation of managed species (e.g., threatened or hunted). We aimed to investigate the relationship between depredation rate, nest camouflage and concealment in ground-nesting birds of farmlands, and their predators. We set up an experiment of 2576 artificial ground nests to assess the role of egg coloration (white, light green, and dark green), egg size (small, medium, and large), and vegetation structure (vegetation height and land use) in nest survival rates. We also explored the role of predator searching strategies by analysing clumped depredation and multiple depredation events. Of the nests, 34.0% were depredated, with corvids as the predators 78.5% of the time. Corvid depredation decreased by 40-60% in grasslands and spring crops above a vegetation height of 30 cm. In contrast, vegetation height and land use may be of far less importance in avoiding depredation by other predators. The probability of depredation was spatially clumped, suggesting that predators increase search effort in areas where a nest was previously encountered. Neighboring depredation and depredation repetition were more frequent in corvids than in other predators. Our study indicates that nests in vegetation higher than 30 cm had a drastic reduction in depredation rates by corvids. Management of vegetation structure is a key tool to mitigate depredation risk, and improving the availability of alternative food resources may be a complementary tool.

A multiresidue analytical method on air and rainwater for assessing pesticide atmospheric contamination in untreated areas.

The use of pesticides in agriculture to protect crops against pests and diseases generates environmental contamination. The atmospheric compartment contributes to their dispersion at different distances from the application areas and to the exposure of organisms in untreated areas through dry and wet deposition. A multiresidue analytical method using the same TD-GC-MS analytical pipeline to quantify pesticide concentrations in both the atmosphere and rainwater was developed and tested in natura. A Box-Behnken experimental design was used to identify the best compromise in extraction conditions for all 27 of the targeted molecules in rainwater. Extraction yields were above 80% except for the pyrethroid family, for which the recovery yields were around 40-59%. TD-GC-MS proved to be a good analytical solution to detect and quantify pesticides in both target matrices with low limits of quantification. Twelve pesticides (six fungicides, five herbicides and one insecticide) were quantified in rainwater at concentrations ranging from 0.5 ng·L-1 to 170 ng·L-1 with a seasonal effect, and a correlation was found between the concentrations in rainwater and air. The calculated cumulative wet deposition rates are discussed regarding pesticide concentrations in the topsoil in untreated areas for some of the studied compounds.

Sea surface temperature, rather than land mass or geographic distance, may drive genetic differentiation in a species complex of highly dispersive seabirds.

Seabirds, particularly Procellariiformes, are highly mobile organisms with a great capacity for long dispersal, though simultaneously showing high philopatry, two conflicting life-history traits that may lead to contrasted patterns of genetic population structure. Landmasses were suggested to explain differentiation patterns observed in seabirds, but philopatry, isolation by distance, segregation between breeding and nonbreeding zones, and oceanographic conditions (sea surface temperatures) may also contribute to differentiation patterns. To our knowledge, no study has simultaneously contrasted the multiple factors contributing to the diversification of seabird species, especially in the gray zone of speciation. We conducted a multilocus phylogeographic study on a widespread seabird species complex, the little shearwater complex, showing highly homogeneous morphology, which led to considerable taxonomic debate. We sequenced three mitochondrial and six nuclear markers on all extant populations from the Atlantic (lherminieri) and Indian Oceans (bailloni), that is, five nominal lineages from 13 populations, along with one population from the eastern Pacific Ocean (representing the dichrous lineage). We found sharp differentiation among populations separated by the African continent with both mitochondrial and nuclear markers, while only mitochondrial markers allowed characterizing the five nominal lineages. No differentiation could be detected within these five lineages, questioning the strong level of philopatry showed by these shearwaters. Finally, we propose that Atlantic populations likely originated from the Indian Ocean. Within the Atlantic, a stepping-stone process accounts for the current distribution. Based on our divergence time estimates, we suggest that the observed pattern of differentiation mostly resulted from historical and current variation in sea surface temperatures.

Do human infrastructures shape nest distribution in the landscape depending on individual personality in a farmland bird of prey?

Individuals' distribution across habitats may depend on their personality. Human activities and infrastructures are critical elements of the landscape that may impact the habitat selection process. However, depending on their personality, individuals may respond differently to these unnatural elements. In the present study, we first investigated whether some human infrastructures (buildings, roads and paths) shaped Montagu's harrier nest spatial distribution in the landscape according to female personality (boldness). Second, we tested if the reproductive success of females depended on their boldness and nest location regarding infrastructures. Using a long-term (19 years) dataset, we calculated, for each infrastructure type, the distance from each nest to the nearest infrastructure and the infrastructure density around the nest. We tested the effects of female boldness (bold vs. shy) and its interaction with egg-laying date on these six metrics. Nest location in the landscape depended on female personality and on some human infrastructures: the building density was smaller around nests from shy females than from bold ones. Nest distribution related to other infrastructure metrics did not depend on female boldness. The pattern related to building density is consistent with some habitat choice hypotheses, which are discussed. Path density around nests negatively affected reproductive success regardless of female boldness, and late breeders nested further away from paths than early breeders. Human activities on paths (more common later in the season) could lead to disturbance and a decrease in parental care, reducing reproductive success. Increasing human presence in farmlands implies a need to better understand its impact on population composition, in terms of personality. Our results suggest that individual behavioural differences should be taken into account in studies assessing the effects of human disturbance on animal populations, to propose more appropriate conservation measures.

La distribution des individus au sein de l'habitat peut dépendre de leur personnalité. Les activités et infrastructures humaines sont des éléments importants du paysage qui peuvent impacter le processus de sélection des habitats. Cependant, en fonction de leur personnalité, les individus peuvent répondre différemment à ces éléments non naturels. Dans cette étude, nous avons d'abord examiné si certaines infrastructures humaines (bâtiments, routes et chemins) influençaient la répartition spatiale des nids de busard cendré en fonction de la personnalité des femelles (témérité). Ensuite, nous avons testé si le succès reproducteur des femelles dépendait de leur témérité et de la localisation du nid par rapport aux infrastructures. En utilisant des données à long terme (19 ans), nous avons calculé, pour chaque type d'infrastructure, la distance de chaque nid à la plus proche infrastructure et la densité en infrastructures autour de chaque nid. Nous avons testé les effets de la témérité des femelles (téméraire vs. timide) et son interaction avec la date de ponte sur les six métriques. La répartition spatiale des nids dépendait de la personnalité des femelles et de certaines infrastructures humaines: la densité en bâtiments était plus faible autour des nids de femelles timides qu'autour de ceux des téméraires. La distribution des nids par rapport aux autres métriques d'infrastructure n'était pas influencée par la témérité des femelles. Le patron lié à la densité en bâtiments est en accord avec certaines hypothèses de choix d'habitat qui sont discutées. La densité en chemins autour des nids affectait négativement le succès reproducteur indépendamment de la témérité des femelles, et les femelles tardives nichaient plus loin des chemins que les précoces. Les activités humaines sur les chemins (plus fréquentes tard dans la saison de reproduction) pourraient entrainer une perturbation et une diminution des soins parentaux, réduisant ainsi le succès reproducteur. L'augmentation de la présence humaine dans les zones agricoles implique la nécessité de mieux comprendre son impact sur la composition de la population, en termes de personnalité. Nos résultats suggèrent que les différences comportementales interindividuelles devraient être prises en compte dans les études évaluant les effets des perturbations humaines sur les populations animales afin de proposer des mesures de conservations plus appropriées.

Feeding partridges with organic or conventional grain triggers cascading effects in life-history traits.

Farmland birds are declining across Europe and North America and the research of factors behind is the subject of extensive researches. Agricultural intensification is now recognized as a major factor governing the loss of biodiversity with strong evidence that pesticides induced direct bird mortality at a high dose. However, less attention has been given to the long-term effects of chronic exposure to low dose of pesticides. Here, we used an experimental procedure in which grey partridges were fed with untreated grains obtained from either organic (no pesticide) or conventional agriculture (with pesticide) for 26 weeks, thus strictly mimicking wild birds foraging on fields. We then examined a suite of life-history traits (ecophysiological and behavioural) that may ultimately, influence population dynamics. We show for the first time that ingesting low pesticide doses over a long period has long-term consequences on several major physiological pathways without inducing differential mortality. Compared to control partridges, birds exposed to chronic doses i) had less developed carotenoid-based ornaments due to lower concentrations of plasmatic carotenoids, ii) had higher activated immune system, iii) showed signs of physiological stress inducing a higher intestinal parasitic load, iv) had higher behavioural activity and body condition and v) showed lower breeding investment. Our results are consistent with a hormetic effect, in which exposure to a low dose of a chemical agent may induce a positive response, but our results also indicate that breeding adults may show impaired fitness traits bearing population consequences through reduced breeding investment or productivity. Given the current scale of use of pesticides in agrosystems, we suggest that such shifts in life-history traits may have a negative long-term impact on wild bird populations across agrosystems. We stress that long-term effects should no longer be ignored in pesticide risk assessment, where currently, only short-term effects are taken into account.

Integrating Sequence Capture and Restriction Site-Associated DNA Sequencing to Resolve Recent Radiations of Pelagic Seabirds.

The diversification of modern birds has been shaped by a number of radiations. Rapid diversification events make reconstructing the evolutionary relationships among taxa challenging due to the convoluted effects of incomplete lineage sorting (ILS) and introgression. Phylogenomic data sets have the potential to detect patterns of phylogenetic incongruence, and to address their causes. However, the footprints of ILS and introgression on sequence data can vary between different phylogenomic markers at different phylogenetic scales depending on factors such as their evolutionary rates or their selection pressures. We show that combining phylogenomic markers that evolve at different rates, such as paired-end double-digest restriction site-associated DNA (PE-ddRAD) and ultraconserved elements (UCEs), allows a comprehensive exploration of the causes of phylogenetic discordance associated with short internodes at different timescales. We used thousands of UCE and PE-ddRAD markers to produce the first well-resolved phylogeny of shearwaters, a group of medium-sized pelagic seabirds that are among the most phylogenetically controversial and endangered bird groups. We found that phylogenomic conflict was mainly derived from high levels of ILS due to rapid speciation events. We also documented a case of introgression, despite the high philopatry of shearwaters to their breeding sites, which typically limits gene flow. We integrated state-of-the-art concatenated and coalescent-based approaches to expand on previous comparisons of UCE and RAD-Seq data sets for phylogenetics, divergence time estimation, and inference of introgression, and we propose a strategy to optimize RAD-Seq data for phylogenetic analyses. Our results highlight the usefulness of combining phylogenomic markers evolving at different rates to understand the causes of phylogenetic discordance at different timescales. [Aves; incomplete lineage sorting; introgression; PE-ddRAD-Seq; phylogenomics; radiations; shearwaters; UCEs.].

Revisiting an old question: Which predators eat eggs of ground-nesting birds in farmland landscapes?

Nest predation is a major cause of reproductive failure in birds, but predator identity often remains unknown. Additionally, although corvids are considered major nest predators in farmland landscapes, whether breeders or floaters are involved remains contentious. In this study, we aimed to identify nest predators using artificial nests, and test whether territorial or non-breeders carrion crow (Corvus corone) and Eurasian magpie (Pica pica) were most likely involved. We set up an experiment with artificial ground nests (n = 1429) in farmland landscapes of western France, and assessed how different combinations of egg size and egg material (small plasticine egg, large plasticine egg, quail and natural hen eggs) might influence predation rates and predator species involved. Nest predators were identified using remotely triggered cameras and marks left in plasticine eggs. Corvids were by far the predators most involved (almost 80% of all predation events), independent of egg type. Carrion crows alone were involved in 60% of cases. Probability of predation increased with egg size, and predation rate was higher for natural than for artificial eggs, suggesting that, in addition to egg size, predators might perceive plasticine and natural eggs differently. Predation rates of artificial nests by corvids were related significantly to corvid abundance, and far more to breeder than floater abundances, for both carrion crows and magpies. This study emphasizes the importance of identifying predators at species level, and considering their social status when assessing corvid abundance impact on prey population dynamics. Combining camera traps and plasticine eggs can achieve this objective. Given the high predation rate by carrion crows, a better understanding of landscape-mediated changes in predator diet seems mandatory to design mitigation schemes able to confront ecological challenges raised by generalist predators.