Changes in beta diversity and species functional traits differ between saplings and mature trees in an old-growth forest.

Invasion by generalist tree species can cause biotic homogenization, and such community impoverishment is likely more important in rare forest types. We quantified changes in tree diversity within Carolinian (range in Central Hardwood Forest), central (range in Central Hardwood Forest and Northern Hardwood-Conifer Forest), and northern species [range reached Northern-Conifer-Hardwood/closed Boreal (spruce-Fir) Forest] in an old forest tract in southern Canada at points surveyed 24 years apart. We asked: How did mature tree and sapling composition and abundance change for the three species' groups? Did those changes lead to biotic homogenization? Can species' changes be explained by community traits? We tested for differences in temporal and spatial tree ß-diversity, as well as forest composition and structure, using univariate/multivariate analyses and a community trait-based approach to identify drivers of change. Major increases occurred in abundance for mature Acer rubrum (northern), while other species decreased (Fraxinus americana, Populus grandidentata); declines were found in A. saccharinum (central) and Cornus florida (Carolinian). Species composition of saplings, but not mature trees, changed due to replacement; no evidence for biotic homogenization existed in either cohort. As a group, northern mature tree species increased significantly, while central species decreased; saplings of pooled Carolinian species also declined. Shade tolerance in mature trees increased, reflecting successional changes, while drought tolerance decreased, perhaps due to changing temperatures, altered precipitation or ground water levels. Saplings showed declines in all traits, probably because of compositional change. Our results demonstrated that saplings can more closely reflect change in forest dynamics than mature trees, especially over short time periods. Based on sapling trends, this remnant could ultimately transition to a mesophytic hardwood stand dominated by A. rubrum and other shade-tolerant species, creating a more homogeneous forest. While encouraging regeneration for Carolinian and central tree species could ensure high levels of diversity are conserved in the future, it is important to balance this with the primary management goal of maintaining the forest's old-growth characteristics.

Moderate disturbances accelerate forest transition dynamics under climate change in the temperate-boreal ecotone of eastern North America.

Several temperate tree species are expected to migrate northward and colonize boreal forests in response to climate change. Tree migrations could lead to transitions in forest types, but these could be influenced by several non-climatic factors, such as disturbances and soil conditions. We analysed over 10,000 forest inventory plots, sampled from 1970 to 2018 in meridional Québec, Canada, to identify what environmental conditions promote or prevent regional-scale forest transitions. We used a continuous-time multi-state Markov model to quantify the probabilities of transitions between forest states (temperate, boreal, mixed, pioneer) as a function of climate (mean temperature and climate moisture index during the growing season), soil conditions (pH and drainage) and disturbances (severity levels of natural disturbances and logging). We further investigate how different disturbance types and severities impact forests' short-term transient dynamics and long-term equilibrium using properties of Markov transition matrices. The most common transitions observed during the study period were from mixed to temperate states, as well as from pioneer to boreal forests. In our study, transitions were mainly driven by natural and anthropogenic disturbances and secondarily by climate, whereas soil characteristics exerted relatively minor constraints. While major disturbances only promoted transitions to the pioneer state, moderate disturbances increased the probability of transition from mixed to temperate states. Long-term projections of our model under the current environmental conditions indicate that moderate disturbances would promote a northward shift of the temperate forest. Moreover, disturbances reduced turnover and convergence time for all transitions, thereby accelerating forest dynamics. Contrary to our expectation, mixed to temperate transitions were not driven by temperate tree recruitment but by mortality and growth. Overall, our results suggest that moderate disturbances could catalyse rapid forest transitions and accelerate broad-scale biome shifts.

Vegetation changes in temperate ombrotrophic peatlands over a 35 year period.

Global changes in climate and land use are occurring at an unprecedented rate, often triggering drastic shifts in plant communities. This study aims to reconstruct the changes that occurred over 35 years in the plant communities of temperate bogs subjected to indirect human-induced disturbances. In 2015-17, we resurveyed the vascular flora of 76 plots located in 16 bogs of southern Québec (Canada) first sampled in 1982. We evaluated changes in species richness, frequency of occurrence and abundance, while considering species shade-tolerance and preferential habitat. We calculated beta diversity as between-site similarities in composition, and evaluated differences between the two surveys using tests for homogeneity in multivariate dispersion. We found a significant increase in species richness and beta diversity over the last 35 years associated with major species turnovers, indicating a biotic differentiation of the Sphagnum-bog plant communities. These changes were mostly associated with an increase in the abundance and frequency of shade-tolerant and facultative species, suggesting a global phenomenon of woody encroachment. Because the observed changes occurred in a few decades on sites free of in situ human disturbances, we suggest that they were likely induced by the synergic effect of the agricultural drainage occurring in the surrounding mineral soils, climate warming, and nitrogen atmospheric depositions. We also believe that further changes are to be expected, as the triggering factors persist. Finally, our results highlight the need for increased bog conservation or restauration efforts. Indeed, a rise in beta diversity due to the introduction of nearby terrestrial species could induce biotic homogenization of the bog flora with that of surrounding habitats and ultimately impoverish the regional species pool.

Homogenization of freshwater lakes: Recent compositional shifts in fish communities are explained by gamefish movement and not climate change.

Globally, lake fish communities are being subjected to a range of scale-dependent anthropogenic pressures, from climate change to eutrophication, and from overexploitation to species introductions. As a consequence, the composition of these communities is being reshuffled, in most cases leading to a surge in taxonomic similarity at the regional scale termed homogenization. The drivers of homogenization remain unclear, which may be a reflection of interactions between various environmental changes. In this study, we investigate two potential drivers of the recent changes in the composition of freshwater fish communities: recreational fishing and climate change. Our results, derived from 524 lakes of Ontario, Canada sampled in two periods (1965-1982 and 2008-2012), demonstrate that the main contributors to homogenization are the dispersal of gamefish species, most of which are large predators. Alternative explanations relating to lake habitat (e.g., area, phosphorus) or variations in climate have limited explanatory power. Our analysis suggests that human-assisted migration is the primary driver of the observed compositional shifts, homogenizing freshwater fish community among Ontario lakes and generating food webs dominated by gamefish species.

Analysing ecological networks of species interactions.

Network approaches to ecological questions have been increasingly used, particularly in recent decades. The abstraction of ecological systems - such as communities - through networks of interactions between their components indeed provides a way to summarize this information with single objects. The methodological framework derived from graph theory also provides numerous approaches and measures to analyze these objects and can offer new perspectives on established ecological theories as well as tools to address new challenges. However, prior to using these methods to test ecological hypotheses, it is necessary that we understand, adapt, and use them in ways that both allow us to deliver their full potential and account for their limitations. Here, we attempt to increase the accessibility of network approaches by providing a review of the tools that have been developed so far, with - what we believe to be - their appropriate uses and potential limitations. This is not an exhaustive review of all methods and metrics, but rather, an overview of tools that are robust, informative, and ecologically sound. After providing a brief presentation of species interaction networks and how to build them in order to summarize ecological information of different types, we then classify methods and metrics by the types of ecological questions that they can be used to answer from global to local scales, including methods for hypothesis testing and future perspectives. Specifically, we show how the organization of species interactions in a community yields different network structures (e.g., more or less dense, modular or nested), how different measures can be used to describe and quantify these emerging structures, and how to compare communities based on these differences in structures. Within networks, we illustrate metrics that can be used to describe and compare the functional and dynamic roles of species based on their position in the network and the organization of their interactions as well as associated new methods to test the significance of these results. Lastly, we describe potential fruitful avenues for new methodological developments to address novel ecological questions.