Genome-wide association study of Stayability and Heifer Pregnancy in Red Angus cattle.

Reproductive performance is the most important component of cattle production from the standpoint of economic sustainability of commercial beef enterprises. Heifer Pregnancy (HPG) and Stayability (STAY) genetic predictions are 2 selection tools published by the Red Angus Association of America (RAAA) to assist with improvements in reproductive performance. Given the importance of HPG and STAY to the profitability of commercial beef enterprises, the objective of this study was to identify QTL associated with both HPG and STAY in Red Angus cattle. A genome-wide association study (GWAS) was performed using deregressed HPG and STAY EBV, calculated using a single-trait animal model and a 3-generation pedigree with data from the Spring 2015 RAAA National Cattle Evaluation. Each individual animal possessed 74,659 SNP genotypes. Individual animals with a deregressed EBV reliability > 0.05 were merged with the genotype file and marker quality control was performed. Criteria for sifting genotypes consisted of removing those markers where any of the following were found: average call rate less than 0.85, minor allele frequency < 0.01, lack of Hardy-Weinberg equilibrium (P < 0.0001), or extreme linkage disequilibrium (r2 > 0.99). These criteria resulted in 2,664 animals with 62,807 SNP available for GWAS. Association studies were performed using a Bayes Cπ model in the BOLT software package. Marker significance was calculated as the posterior probability of inclusion (PPI), or the number of instances a specific marker was sampled divided by the total number of samples retained from the Markov chain Monte Carlo chains. Nine markers, with a PPI ≥ 3% were identified as QTL associated with HPG on BTA 1, 11, 13, 23, and 29. Twelve markers, with a PPI ≥ 75% were identified as QTL associated with STAY on BTA 6, 8, 9, 12, 15, 18, 22, and 23.

Reversal of the net dinitrogen gas flux in coastal marine sediments.

The flux of nitrogen from land and atmosphere to estuaries and the coastal ocean has increased substantially in recent decades. The observed increase in nitrogen loading is caused by population growth, urbanization, expanding water and sewer infrastructure, fossil fuel combustion and synthetic fertilizer consumption. Most of the nitrogen is removed by denitrification in the sediments of estuaries and the continental shelf, leading to a reduction in both cultural eutrophication and nitrogen pollution of the open ocean. Nitrogen fixation, however, is thought to be a negligible process in sub-tidal heterotrophic marine systems. Here we report sediment core data from Narragansett Bay, USA, which demonstrate that heterotrophic marine sediments can switch from being a net sink to being a net source of nitrogen. Mesocosm and core incubation experiments, together with a historic data set of mean annual chlorophyll production, support the idea that a climate-induced decrease in primary production has led to a decrease in organic matter deposition to the benthos and the observed reversal of the net sediment nitrogen flux. Our results suggest that some estuaries may no longer remove nitrogen from the water column. Instead, nitrogen could be exported to the continental shelf and the open ocean and could shift the effect of anthropogenic nitrogen loading beyond the immediate coastal zone.

Adjusting the thermostat: the threshold induction temperature for the heat-shock response in intertidal mussels (genus Mytilus) changes as a function of thermal history.

Spatio-temporal variation in heat-shock gene expression gives organisms the ability to respond to changing thermal environments. The temperature at which heat-shock genes are induced, the threshold induction temperature, varies as a function of the recent thermal history of an organism. To elucidate the mechanism by which this plasticity in gene expression is achieved, we determined heat-shock protein (Hsp) induction threshold temperatures in the intertidal mussel Mytilus trossulus collected from the field in February and again in August. In a separate experiment, threshold induction temperatures, endogenous levels of both the constitutive and inducible isoforms of Hsps from the 70 kDa family and the quantity of ubiquitinated proteins (a measure of cellular protein denaturation) were measured in M. trossulus after either 6 weeks of cold acclimation in the laboratory or acclimatization to warm, summer temperatures in the field over the same period. In addition, we quantified levels of activated heat-shock transcription factor 1 (HSF1) in both groups of mussels (HSF1 inducibly transactivates all classes of Hsp genes). Lastly, we compared the temperature of HSF1 activation with the induction threshold temperature in the congeneric M. californianus. It was found that the threshold induction temperature in M. trossulus was 23 degrees C in February and 28 degrees C in August. This agreed with the acclimation/acclimatization experiment, in which mussels acclimated in seawater tables to a constant temperature of 10-11 degrees C for 6 weeks displayed a threshold induction temperature of 20-23 degrees C compared with 26-29 degrees C for individuals that were experiencing considerably warmer body temperatures in the intertidal zone over the same period. This coincided with a significant increase in the inducible isoform of Hsp70 in warm-acclimatized individuals but no increase in the constitutive isoform or in HSF1. Levels of ubiquitin-conjugated protein were significantly higher in the field mussels than in the laboratory-acclimated individuals. Finally, the temperature of HSF1 activation in M. californianus was found to be approximately 9 degrees C lower than the induction threshold for this species.

Heat-shock protein expression is absent in the antarctic fish Trematomus bernacchii (family Nototheniidae).

The heat-shock response, the enhanced expression of one or more classes of molecular chaperones termed heat-shock proteins (hsps) in response to stress induced by high temperatures, is commonly viewed as a 'universal' characteristic of organisms. We examined the occurrence of the heat-shock response in a highly cold-adapted, stenothermal Antarctic teleost fish, Trematomus bernacchii, to determine whether this response has persisted in a lineage that has encountered very low and stable temperatures for at least the past 14-25 million years. The patterns of protein synthesis observed in in vivo metabolic labelling experiments that involved injection of (35)S-labelled methionine and cysteine into whole fish previously subjected to a heat stress of 10 degrees C yielded no evidence for synthesis of any size class of heat-shock protein. Parallel in vivo labelling experiments with isolated hepatocytes similarly showed significant amounts of protein synthesis, but no indication of enhanced expression of any class of hsp. The heavy metal cadmium, which is known to induce synthesis of hsps, also failed to alter the pattern of proteins synthesized in hepatocytes. Although stress-induced chaperones could not be detected under any of the experimental condition used, solid-phase antibody (western) analysis revealed that a constitutively expressed 70 kDa chaperone was present in this species, as predicted on the basis of requirements for chaperoning during protein synthesis. Amounts of the constitutively expressed 70 kDa chaperone increased in brain, but not in gill, during 22 days of acclimation to 5 degrees C. The apparent absence of a heat-shock response in this highly stenothermal species is interpreted as an indication that a physiological capacity observed in almost all other organisms has been lost as a result of the absence of positive selection during evolution at stable sub-zero temperatures. Whether the loss of the heat-shock response is due to dysfunctional genes for inducible hsps (loss of open reading frames or functional regulatory regions), unstable messenger RNAs, the absence of a functional heat-shock factor or some other lesion remains to be determined.

Prepartum nutrition and solar radiation in beef cattle: II. Residual effects on postpartum milk yield, immunoglobulin, and calf growth.

Residual effects of nutrition and solar radiation during the last two-thirds of gestation on postpartum milk yield, immunoglobulin (Ig) G and M in both colostrum and calf serum, and calf growth were determined in beef cattle. Nineteen mature, multiparous crossbred cows (Bos taurus) at d 90 of pregnancy were assigned to either low (LO, 70% NRC total energy intake) or high (HI, 110% NRC total energy intake) nutritional level (sudangrass hay) and to either shade (S) or no shade (NS) treatments in a 2 x 2 factorial experiment. After parturition, all cows were moved into a large paddock and managed uniformly. Calf weights and calf serum were collected within 1 d postpartum, thereafter at 2-wk intervals for the next 12 wk, and then at 4-wk intervals until weaning. Colostrum samples were taken from the cow and milk yields were determined by the "weigh-suckle-weigh" technique. Neither prepartum nutrition nor environment influenced lactational performance of the dam. Concentrations of IgG were elevated in the colostrum of LO cows (15.3 vs 7.8 g/100 mL, LO vs HI, respectively; P < or = .05) but were not affected by shading. The patterns of IgG concentration in the calf serum were not altered by prepartum nutrition or environment; however, the pattern of IgM concentrations was greater (P < or = .01) in calves from S cows than in those from NS cows. This difference in IgM profile did not seem to be due to any residual effect from prepartum treatments. Postnatal growth of calves from birth until weaning were similar across all prepartum treatments.(ABSTRACT TRUNCATED AT 250 WORDS)

Prepartum nutrition and solar radiation in beef cattle: I. Relationships of body fluid compartments, packed cell volume, plasma urea nitrogen, and estrogens to prenatal development.

Adaptations in body fluid pools during pregnancy were monitored in cows (n = 19) assigned to either low (LO, 70% NRC total feed intake) or high (HI, 110% NRC total feed intake) nutritional level (sudangrass hay) and to either shade (S) or no shade (NS) treatments in a 2 x 2 factorial experiment. Body water distribution (empty body water [EBW] by urea dilution; extracellular water [ECW] by thiosulfate dilution; intracellular water [ICW] by difference; plasma volume by Evans Blue dilution; interstitial water [ISW] by difference) was measured at 4-wk intervals beginning at 3 mo of pregnancy until birth and then immediately after birth. Both EBW and ICW in LO cows showed a steady decline (P < or = .05), whereas HI cows tended to maintain these body pools throughout gestation. Shading did not affect the pattern of change in EBW; however, it did produce a greater (P < or = .05) ICW in the S than in the NS cows throughout gestation. Generally, other body fluid pools (ECW, ISW, and plasma) were either not affected, or were just slightly affected, by shading or nutrition. Most of the body fluid pools (EBW, ECW, ICW, and ISW) inversely followed the seasonal changes in solar radiation. Calf birth weights were not affected by treatments but were moderately correlated to EBW (r = .49; P < or = .05) and ICW (r = .50; P < or = .05). Plasma urea nitrogen change, although not affected by nutrition, was affected (P < or = .05) by shading.(ABSTRACT TRUNCATED AT 250 WORDS)

Body composition and fasting heat production from birth to 14 months of age for three biological types of beef heifers.

Thirty heifers were randomly sampled at five ages from each of the Hereford, Charolais, and Simmental herds at the U.S. Meat Animal Research Center to estimate association of fasting heat production (FHP) with body composition. Replicated measures of respiratory exchange were obtained for six heifers per breed at ages 2 d, 3 mo, 7 mo, 10 mo, and 14 mo using open-circuit calorimetry. Regression adjustment of FHP/live weight.75 to zero activity (AFHP) reduced the mean by 12% and variance among periods for the same animal by 42%. Daily AFHP (kcal/kg.75) was highest at 2 d (122), lowest at 10 mo (92) (P less than .01), and intermediate (103 to 106) at other ages and averaged 109, 106, and 102 for Charolais, Simmental and Hereford over all ages (P less than .05). Pooled within-age correlations of AFHP were .77 with weight of carcass (CAR) nonfat or water and .75 with live and empty body weight (EBW) but were only .13 with fat weight. Prediction of AFHP within age groups was most accurate from multiple regression on the nonfat weight in visceral organs and blood (VOB), gastrointestinal tract (GIF), head, hide, and shanks (HHS), and CAR fractions (R2 = 61%, error SD = 21.5), from regression on nonfat in CAR alone (60%, 21.6), or from regression on chemical components in each of the four fractions (59%, 22.0), relative to EBW (55%, 22.9) or its four chemical components (58%, 22.3). Partial regressions were largest for water or nonfat (P less than .01) and were negligible for fat. Importance in predicting AFHP was two to eight times greater for nonfat in CAR than in other fractions because CAR was 60 to 65% of EBW. Lean mass is clearly a major predictor of nutrient requirement that is useful to evaluate effects of body composition on the efficiency of beef production.

Body composition and tissue distribution from birth to 14 months for three biological types of beef heifers.

Thirty-four heifers were sampled randomly from each of the Hereford (He), Charolais (Ch) and Simmental (Si) herds at the U.S. Meat Animal Research Center at 2 d to 14 mo of age to examine body chemical composition and tissue distribution. Six heifers per breed were slaughtered after calorimetry at 2 d, 3 mo, 7 mo, 10 mo and 14 mo of age, and four others at 8 mo, to measure weight of empty body (EBW), water, fat, ash and protein as residual, in four fractions: carcass (CAR), head, hide and shanks (HHS), gastrointestinal tract plus internal fat (GIF) and visceral organs plus blood (VOB). Fasted live weight from birth to 14 mo increased from 39 to 414 kg for Ch, 38 to 385 kg for Si and 33 to 356 kg for He. Corresponding mean composition of EBW increased from 58 to 67% CAR and from 7 to 13% GIF but declined from 26 to 15% HHS and from 9 to 6% VOB. The water content of EBW declined from 73 to 51%, protein from 20 to 18% and ash from 4.3 to 3.5%, whereas fat increased from 3 to 28% and protein content of fat-free OM increased from 22% to 26%. Composition of CAR was similar to EBW but fat content increased more with age in GIF, less in HHS and least in VOB. Distribution of fat-free tissue changed from 58 to 66% in CAR, 26 to 18% in HHS, 7 to 8% in GIF and 9 to 8% in VOB. The EBW of Ch contained more CAR but less HHS than EBW of Si and HE. The EBW of Si and Ch contained more water and protein and less FAT than EBW of HE. The fatter He had proportionately less of their fat-free tissue in CAR (63%) and more in HHS (21%) and GIF (9%) than the Ch (66, 19, and 8%), with Si (64, 20 and 8%) intermediate. These age and breed differences in composition and tissue distribution may explain some of the variation in maintenance requirements.

Glucose kinetics in lactating and nonlactating dairy goats.

Both intravenous single injections of 6-tritium labeled glucose and primed continuous infusions of uniformly labeled carbon-14 glucose were applied to four nonpregnant Saanen goats. Four sequential treatments were high milk production, low milk production, "dry" with no milk production, and fasting during the dry period. The diet was 25% chopped alfalfa hay and 75% grain, and by design feed intake decreased sequentially (1.85, 1.49, .80) and 0 kg/day) with the progression from high production to fasting. Glucose irreversible loss averages from single injections of tritium labeled glucose were 199, 169, 96, and 58 mg/min for respective treatments; similar averages from continuous infusions of carbon labeled glucose for the first three treatments were 164, 132, and 76 mg/min, or about 20% less. Other blood glucose kinetic parameters were estimated after single injections, and averages declined from 5.9 to 4.5 g for pool size, 315 to 134 mg/min for total entry rate, and 115 to 76 mg/min for recycling as goats went from high production to fasting. Transfer of blood glucose to milk constituents was determined by continuous infusion. Transfer quotients for lactose were 73% for high production and 67% for low production; for casein they were 1.8 and 1.9%. The percentage of glucose irreversible loss accounted for in lactose was 31% for high production and 17% for low production whereas less than .2% was in casein.