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1.
Methods Enzymol ; 697: 269-291, 2024.
Artículo en Inglés | MEDLINE | ID: mdl-38816126

RESUMEN

The design of small peptides that assemble into catalytically active intermolecular structures has proven to be a successful strategy towards developing minimalistic catalysts that exhibit some of the unique functional features of enzymes. Among these, catalytic amyloids have emerged as a fruitful source to unravel many different activities. These assemblies can potentially have broad applications that range from biotechnology to prebiotic chemistry. Although many peptides that assemble into catalytic amyloids have been developed in recent years, the elucidation of convergent mechanistic aspects of the catalysis and the structure/function relationship is still a challenge. Novel catalytic activities are necessary to better address these issues and expand the current repertoire of applicability. In this chapter, we described a methodology to produce catalytic amyloids that are specifically active towards the hydrolysis of phosphoanhydride bonds of nucleotides. The design of potentially active amyloid-prone peptide sequences is explored using as template the active site of enzymes with nucleotidyltransferase activity. The procedures include an approach for sequence design, in vitro aggregation assays, morphological characterization of the amyloid state and a comprehensive methodology to measure activity in vitro using nucleoside and deoxynucleosides triphosphates as model substrates. The proposed strategy can also be implemented to explore different types of activities for the design of future catalytic amyloids.


Asunto(s)
Amiloide , Nucleótidos , Hidrólisis , Amiloide/química , Amiloide/metabolismo , Nucleótidos/química , Nucleótidos/metabolismo , Dominio Catalítico , Secuencia de Aminoácidos , Catálisis , Biocatálisis
2.
Langmuir ; 40(12): 6094-6106, 2024 Mar 26.
Artículo en Inglés | MEDLINE | ID: mdl-38470353

RESUMEN

Rational design of peptides has become a powerful tool to produce self-assembled nanostructures with the ability to catalyze different chemical reactions, paving the way to develop minimalistic enzyme-like nanomaterials. Catalytic amyloid-like assemblies have emerged among the most versatile and active, but they often require additional factors for activity. Elucidating how these factors influence the structure and activity is key for the design. Here, we showed that biologically relevant metal ions can guide and modulate the self-assembly of a small peptide into diverse amyloid architectures. The morphology and catalytic activity of the resulting fibrils were tuned by the specific metal ion decorating the surface, whereas X-ray structural analysis of the amyloids showed ion-dependent shape sizes. Molecular dynamics simulations showed that the metals can strongly affect the local conformational space, which can trigger major rearrangements of the fibrils. Our results demonstrate that the conformational landscape of catalytic amyloids is broad and tunable by external factors, which can be critical for future design strategies.


Asunto(s)
Amiloide , Péptidos , Amiloide/química , Péptidos/química , Metales/química , Proteínas Amiloidogénicas , Iones
3.
Nature ; 620(7973): 292-298, 2023 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-37257843

RESUMEN

Close-in giant exoplanets with temperatures greater than 2,000 K ('ultra-hot Jupiters') have been the subject of extensive efforts to determine their atmospheric properties using thermal emission measurements from the Hubble Space Telescope (HST) and Spitzer Space Telescope1-3. However, previous studies have yielded inconsistent results because the small sizes of the spectral features and the limited information content of the data resulted in high sensitivity to the varying assumptions made in the treatment of instrument systematics and the atmospheric retrieval analysis3-12. Here we present a dayside thermal emission spectrum of the ultra-hot Jupiter WASP-18b obtained with the NIRISS13 instrument on the JWST. The data span 0.85 to 2.85 µm in wavelength at an average resolving power of 400 and exhibit minimal systematics. The spectrum shows three water emission features (at >6σ confidence) and evidence for optical opacity, possibly attributable to H-, TiO and VO (combined significance of 3.8σ). Models that fit the data require a thermal inversion, molecular dissociation as predicted by chemical equilibrium, a solar heavy-element abundance ('metallicity', [Formula: see text] times solar) and a carbon-to-oxygen (C/O) ratio less than unity. The data also yield a dayside brightness temperature map, which shows a peak in temperature near the substellar point that decreases steeply and symmetrically with longitude towards the terminators.

4.
Nature ; 614(7949): 670-675, 2023 02.
Artículo en Inglés | MEDLINE | ID: mdl-36623550

RESUMEN

The Saturn-mass exoplanet WASP-39b has been the subject of extensive efforts to determine its atmospheric properties using transmission spectroscopy1-4. However, these efforts have been hampered by modelling degeneracies between composition and cloud properties that are caused by limited data quality5-9. Here we present the transmission spectrum of WASP-39b obtained using the Single-Object Slitless Spectroscopy (SOSS) mode of the Near Infrared Imager and Slitless Spectrograph (NIRISS) instrument on the JWST. This spectrum spans 0.6-2.8 µm in wavelength and shows several water-absorption bands, the potassium resonance doublet and signatures of clouds. The precision and broad wavelength coverage of NIRISS/SOSS allows us to break model degeneracies between cloud properties and the atmospheric composition of WASP-39b, favouring a heavy-element enhancement ('metallicity') of about 10-30 times the solar value, a sub-solar carbon-to-oxygen (C/O) ratio and a solar-to-super-solar potassium-to-oxygen (K/O) ratio. The observations are also best explained by wavelength-dependent, non-grey clouds with inhomogeneous coverageof the planet's terminator.

5.
Methods Mol Biol ; 2538: 207-216, 2022.
Artículo en Inglés | MEDLINE | ID: mdl-35951302

RESUMEN

The amyloid fold is nowadays recognized as an alternative conformation accessible to different proteins and peptides. The highly stable and ordered structural organization of amyloid fibrils can be exploited for the design of novel nanomaterials with emergent properties. Recent works have demonstrated that the functional features of the active site of enzymes can be partially recreated using this fold as a scaffold to develop catalytically active amyloids. We describe in this chapter a protocol to design functionally active amyloids that emerge from the self-assembly in vitro of synthetic peptides with sequences based on the active site of enzymes. Using this protocol, we show the development of amyloids that catalyze the metal-dependent hydrolysis of the phosphoanhydride bonds of nucleoside triphosphates.


Asunto(s)
Amiloide , Proteínas Amiloidogénicas , Amiloide/química , Proteínas Amiloidogénicas/química , Catálisis , Dominio Catalítico , Péptidos/química
6.
Biochim Biophys Acta Gen Subj ; 1865(1): 129729, 2021 01.
Artículo en Inglés | MEDLINE | ID: mdl-32916204

RESUMEN

BACKGROUND: Amyloids are highly ordered polypeptide aggregates stabilized by a beta-sheet structural core. Though classically associated to pathology, reports on novel functional roles of these proteins have increasingly emerged in the past decade. Moreover, the recent discovery that amyloids formed with rationally designed small peptides can exhibit catalytic reactivity has opened up new opportunities in both biology and biotechnology. The observed activities typically require the binding of divalent metals, giving rise to active metal-amyloid complexes. METHODS: Peptide (SDIDVFI) was aggregated in vitro. The structure of the self-assembled species was analyzed using fluorescence, transmission electron microscopy, circular dichroism and computational modeling. A kinetic characterization of the emerging catalytic activity was performed. RESULTS: The peptide self-assembled into canonical amyloids that exhibited catalytic activity towards hydrolysis of the phosphoanhydride bonds of adenosine triphosphate (ATP), partially mimicking an ATPase-like enzyme. Both amyloid formation and activity are shown to depend on manganese (Mn2+) binding. The activity was not restricted to ATP but also affected all other ribonucleotides (GTP, CTP and UTP). Peptides carrying a single aspartate exhibited a similar activity. CONCLUSIONS: The phosphoanhydride bonds appear as the main specificity target of the Mn2+-amyloid complex. A single aspartate per peptide is sufficient to enable the hydrolytic activity. GENERAL SIGNIFICANCE: Catalytic amyloids are shown for the first time to catalyze the hydrolysis of all four ribonucleotides. Our results should contribute towards understanding the biological implications of amyloid-mediated reactivity as well as in the design of future catalytic amyloids for biotechnological applications.


Asunto(s)
Adenosina Trifosfatasas/metabolismo , Adenosina Trifosfato/metabolismo , Amiloide/metabolismo , Péptidos/metabolismo , Adenosina Trifosfatasas/química , Secuencia de Aminoácidos , Amiloide/química , Amiloide/ultraestructura , Hidrólisis , Modelos Moleculares , Péptidos/química , Especificidad por Sustrato
7.
Rev. psicol. trab. organ. (1999) ; 34(3): 123-133, dic. 2018. tab, graf
Artículo en Español | IBECS | ID: ibc-176732

RESUMEN

Este estudio analizó la relación entre el capital psicológico y el desempeño contextual, proponiéndose un modelo de moderación que incluyó el apoyo social del trabajo. La muestra fue de 128 trabajadores de atención primaria de salud (82% mujeres, M = 42.8 años). Los resultados apoyan parcialmente la relación entre capital psicológico y desempeño contextual, existiendo diferencias en los resultados según la medida de desempeño; sin embargo, el análisis de regresión lineal confirma que el capital psicológico y la resiliencia predicen el desempeño contextual. La evidencia encontrada no apoya la relación entre desempeño contextual y apoyo social del trabajo y esta última no actúa como variable moderadora en el modelo propuesto para explicar la relación entre capital psicológico y desempeño contextual


This study analyzed the relationship between psychological capital and contextual performance, proposing a model of moderation that includes social support at work. The sample consisted of 128 primary health care workers (82% women, M = 42.8 years). The results support partially the relationship between the psychological capital and contextual performance variables, with differences in the results according to the measure of performance; however, linear regression analysis confirms that psychological capital and resilience predict contextual performance. The evidence found does not support the relationship between contextual performance and social support at work, and this last variable does not act as a moderating variable in the proposed model for the relationship between psychological capital and contextual performance


Asunto(s)
Humanos , Masculino , Femenino , Adulto Joven , Adulto , Persona de Mediana Edad , Anciano , Adaptación Psicológica , 16360 , Evaluación del Rendimiento de Empleados/métodos , Disposición en Psicología , Apoyo Social , Personal de Salud/psicología , Atención Primaria de Salud , Pruebas Psicológicas/estadística & datos numéricos
8.
Nature ; 535(7611): 258-61, 2016 07 14.
Artículo en Inglés | MEDLINE | ID: mdl-27411631

RESUMEN

A snow-line is the region of a protoplanetary disk at which a major volatile, such as water or carbon monoxide, reaches its condensation temperature. Snow-lines play a crucial role in disk evolution by promoting the rapid growth of ice-covered grains. Signatures of the carbon monoxide snow-line (at temperatures of around 20 kelvin) have recently been imaged in the disks surrounding the pre-main-sequence stars TW Hydra and HD163296 (refs 3, 10), at distances of about 30 astronomical units (au) from the star. But the water snow-line of a protoplanetary disk (at temperatures of more than 100 kelvin) has not hitherto been seen, as it generally lies very close to the star (less than 5 au away for solar-type stars). Water-ice is important because it regulates the efficiency of dust and planetesimal coagulation, and the formation of comets, ice giants and the cores of gas giants. Here we report images at 0.03-arcsec resolution (12 au) of the protoplanetary disk around V883 Ori, a protostar of 1.3 solar masses that is undergoing an outburst in luminosity arising from a temporary increase in the accretion rate. We find an intensity break corresponding to an abrupt change in the optical depth at about 42 au, where the elevated disk temperature approaches the condensation point of water, from which we conclude that the outburst has moved the water snow-line. The spectral behaviour across the snow-line confirms recent model predictions: dust fragmentation and the inhibition of grain growth at higher temperatures results in soaring grain number densities and optical depths. As most planetary systems are expected to experience outbursts caused by accretion during their formation, our results imply that highly dynamical water snow-lines must be considered when developing models of disk evolution and planet formation.

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