Salt concentration effects on equilibrium melting curves from DNA microarrays.

DNA microarrays find applications in an increasing number of domains where more quantitative results are required. DNA being a charged polymer, the repulsive interactions between the surface of the microarray and the targets in solution are increasing upon hybridization. Such electrostatic penalty is generally reduced by increasing the salt concentration. In this article, we present equilibrium-melting curves obtained from dedicated physicochemical experiments on DNA microarrays in order to get a better understanding of the electrostatic penalty incurred during the hybridization reaction at the surface. Various salt concentrations have been considered and deviations from the commonly used Langmuir adsorption model are experimentally quantified for the first time in agreement with theoretical predictions.

SPR-imaging based assays on an oligonucleotide-array to analyze DNA lesions recognition and excision by repair proteins.

An original oligonucleotide-array, coupled with SPR-imaging detection, has been developed to study biological interactions between DNA base lesions and DNA repair enzymes. This bioanalytical tool constitutes an efficient screening platform to quantify DNA repair activities and to search for new DNA repair inhibitors.

Point mutation detection by surface plasmon resonance imaging coupled with a temperature scan method in a model system.

The detection of point mutations in genes presents clear biological and medical interest. Various methods have been considered. In this paper, we take advantage of surface plasmon resonance imaging, a technique allowing detection of unlabeled DNA hybridization. Coupled with a temperature scan, this approach allows us to determine the presence of single-point mutations in oligonucleotide samples from the analysis of DNA's melting curves in either the homozygous or heterozygous case. Moreover, these experimental data are confirmed in good agreement with numerical calculations.

Temperature effects on DNA chip experiments from surface plasmon resonance imaging: isotherms and melting curves.

We present an analysis of hybridization experiments on a DNA chip studied by surface plasmon resonance imaging. The reaction constants at various temperatures and for different probe lengths are obtained from Langmuir isotherms and hybridization kinetics. The melting curves from temperature scans are also obtained without any labeling of the targets. The effects of the probe length on the hybridization thermodynamics, deduced from the temperature dependence of the reaction constants as well as from the melting curves, suggest dispersion in the length of the hybridization segments of the probes accessible to the targets. Those are, however, sufficient to suggest efficient point mutation detection from temperature scans.

An unusual phase transition to a second liquid vortex phase in the superconductor YBa2Cu3O7.

A magnetic field penetrates a superconductor through an array of 'vortices', each of which carries one quantum of flux that is surrounded by a circulating supercurrent. In this vortex state, the resistivity is determined by the dynamical properties of the vortex 'matter'. For the high-temperature copper oxide superconductors (see ref.1 for a theoretical review), the vortex phase can be a 'solid', in which the vortices are pinned, but the solid can 'melt' into a 'liquid' phase, in which their mobility gives rise to a finite resistance. (This melting phenomenon is also believed to occur in conventional superconductors, but in an experimentally inaccessible part of the phase diagram.) For the case of YBa2Cu3O7, there are indications of the existence of a critical point, at which the character of the melting changes. But neither the thermodynamic nature of the melting, nor the phase diagram in the vicinity of the critical point, has been well established. Here we report measurements of specific heat and magnetization that determine the phase diagram in this material to 26 T, well above the critical point. Our results reveal the presence of a reversible second-order transition above the critical point. An unusual feature of this transition-namely, that the high-temperature phase is the less symmetric in the sense of the Landau theory-is in accord with theoretical predictions of a transition to a second vortex-liquid phase.

Detection of doubled shot noise in short normal-metal/superconductor junctions

Shot noise refers to the fluctuations in electrical current through a device arising from the discrete nature of the charge-carrying particles. Recent experiments have exploited the fact that the shot noise is proportional to the charge of the carriers to establish fractional quantization of quasiparticles in the fractional quantum Hall effect. By a similar argument, it is expected that when a superconducting reservoir emits Cooper pairs, (which have a charge twice that of an electron) into a short normal-metal wire, the shot noise should be double that obtained for a normal-metal reservoir. Although the charge of Cooper pairs has been well established by flux quantization and tunnel experiments, doubling of their shot noise has not yet been observed. Here we report a shot-noise experiment using a short diffusive normal-metal superconductor contact, in which we confirm the predicted noise behaviour for double charges. The measurements, taken over a large range of bias current, establish that phase coherence is not required to observe the effect.

Three conformational polymorphs and order-disorder phase transition in a calix

Three polymorphs of a calix[4]arene fixed in the 1,3-alternate conformation by two bridges, a crown-6 on one side and a crown-6 including a photoisomerizable azobenzene unit on the other, 8,11,14,28,31,34,37,40,43,57,60,63-dodecaoxa-2,3-diazanonacyclo[62.2.2.2(4,7).1(16,45).1(26,55).0(15,20).0(22,27).0(44,49).0(51,56)]doheptaconta-1(66),2,4,6,15,17,19,22,24,26,44,46,48,51,53,55,64,67,69-nonadecene, have been characterized by single-crystal X-ray diffraction. In all the polymorphs the azobenzene group is in the more stable trans conformation. The polymorphism arises from the high conformational flexibility of the bridges, which are arranged differently and are highly disordered in the two monoclinic forms (1) and (2a). Form (2a) presents a phase transition near 268 (2) K, leading to a triclinic form (2b), differing from the high-temperature form by some ordering of the chains and a subsequent reduction in crystallographic site multiplicity. The evolution of the cell parameters and peak width with temperature has been investigated down to 173 (2) K. Adiabatic calorimetry measurements indicate a smooth transition centered at 265.0 (1) K, with a heat capacity jump of 60 mJ g(-1) K(-1), suggesting a second-order nature for the transition.