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1.
Eur J Radiol ; 178: 111622, 2024 Jul 14.
Artículo en Inglés | MEDLINE | ID: mdl-39018648

RESUMEN

PURPOSE: To investigate the value of microstructural characteristics derived from time-dependent diffusion MRI in distinguishing high-grade serous ovarian cancer (HGSOC) from serous borderline ovarian tumor (SBOT) and the associations of immunohistochemical markers with microstructural features. METHODS: Totally 34 HGSOC and 12 SBOT cases who received preoperative pelvic MRI were retrospectively included in this study. Two radiologists delineated the tumors to obtain the regions of interest (ROIs). Time-dependent diffusion MRI signals were fitted by the IMPULSED (imaging microstructural parameters using limited spectrally edited diffusion) model, to extract microstructural parameters, including fraction of the intracellular component (fin), cell diameter (d), cellularity and extracellular diffusivity (Dex). Apparent diffusion coefficient (ADC) values were obtained from standard diffusion-weighted imaging (DWI). The parameters of HGSOCs and SBOTs were compared, and the diagnostic performance was evaluated. The associations of microstructural indexes with immunopathological parameters were assessed, including Ki-67, P53, Pax-8, ER and PR. RESULTS: In this study, fin, cellularity, Dex and ADC had good diagnostic performance levels in differentiating HGSOC from SBOT, with AUCs of 0.936, 0.909, 0.902 and 0.914, respectively. There were no significant differences in diagnostic performance among these parameters. Spearman analysis revealed in the HGSOC group, cellularity had a significant positive correlation with P53 expression (P = 0.028, r = 0.389) and Dex had a significant positive correlation with Pax-8 expression (P = 0.018, r = 0.415). ICC showed excellent agreement for all parameters. CONCLUSION: Time-dependent diffusion MRI had value in evaluating the microstructures of HGSOC and SBOT and could discriminate between these tumors.

2.
Phys Rev Lett ; 132(18): 188401, 2024 May 03.
Artículo en Inglés | MEDLINE | ID: mdl-38759163

RESUMEN

Instead of the canonical Grotthuss mechanism, we show that a knock-on proton transport process is preferred between organic functional groups (e.g., -COOH and -OH) and adjacent water molecules in biological proton channel and synthetic nanopores through comprehensive quantum and classical molecular dynamics simulations. The knock-on process is accomplished by the switching of covalent O─H bonds of the functional group under externally applied electric fields. The proton transport through the synthetic nanopore exhibits nonlinear current-voltage characteristics, suggesting an unprecedented proton Coulomb blockade effect. These findings not only enhance the understanding of proton transport in nanoconfined systems but also pave the way for the design of a variety of proton-based nanofluidic devices.

3.
Plant Sci ; 342: 112026, 2024 May.
Artículo en Inglés | MEDLINE | ID: mdl-38342186

RESUMEN

Anthocyanins are among the main pigments involved in the colouration of Asiatic hybrid lily (Lilium spp.). Ethylene, a plant ripening hormone, plays an important role in promoting plant maturation and anthocyanin biosynthesis. However, whether and how ethylene regulates anthocyanin biosynthesis in lily tepals have not been characterized. Using yeast one-hybrid screening, we previously identified an APETALA2 (AP2)/ETHYLENE RESPONSE FACTOR (ERF) named LhERF4 as a potential inhibitor of LhMYBSPLATTER-mediated negative regulation of anthocyanin biosynthesis in lily. Here, transcript and protein analysis of LhERF4, a transcriptional repressor, revealed that LhERF4 directly binds to the promoter of LhMYBSPLATTER. In addition, overexpression of LhERF4 in lily tepals negatively regulates the expression of key structural genes and the total anthocyanin content by suppressing the LhMYBSPLATTER gene. Moreover, the LhERF4 gene inhibits anthocyanin biosynthesis in response to ethylene, affecting anthocyanin accumulation and pigmentation in lily tepals. Collectively, our findings will advance and elucidate a novel regulatory network of anthocyanin biosynthesis in lily, and this research provides new insight into colouration regulation.


Asunto(s)
Antocianinas , Lilium , Antocianinas/metabolismo , Lilium/metabolismo , Flores/genética , Factores de Transcripción/metabolismo , Etilenos/metabolismo , Reguladores del Crecimiento de las Plantas/metabolismo , Regulación de la Expresión Génica de las Plantas , Proteínas de Plantas/metabolismo
4.
J Agric Food Chem ; 71(44): 16657-16668, 2023 Nov 08.
Artículo en Inglés | MEDLINE | ID: mdl-37880959

RESUMEN

The expression of plant genes under salt stress at the transcriptional level has been extensively studied. However, less attention has been paid to gene translation regulation under salt stress. In this study, Ribo-seq and RNA-seq analyses were conducted in Medicago truncatula seedlings grown under normal and salt stress conditions. The results showed that salt stress significantly altered the gene expression at the transcriptional and translational levels, with 2755 genes showing significant changes only at the translational level. Salt stress significantly inhibited the gene translation efficiency. Small ORFs (including uORFs in the 5'UTR, dORFs in 3'UTRs, and sORFs in lncRNAs) were identified throughout the genome of M. truncatula. The efficiency of gene translation was simultaneously regulated by the uORFs, dORFs, and miRNAs. In summary, our results provide valuable information about translatomic resources and new insights into plant responses to salt stress.


Asunto(s)
Medicago truncatula , Plantones , Plantones/genética , Plantones/metabolismo , Medicago truncatula/genética , Medicago truncatula/metabolismo , Regulación de la Expresión Génica de las Plantas , Estrés Salino , Estrés Fisiológico/genética , Proteínas de Plantas/genética , Proteínas de Plantas/metabolismo
5.
Hortic Res ; 10(9): uhad167, 2023 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-37779886

RESUMEN

The Asiatic hybrid lily (Lilium spp.) is a horticultural crop with high commercial value and diverse anthocyanin pigmentation patterns. However, the regulatory mechanism underlying lily flower color has been largely unexplored. Here, we identified a WRKY transcription factor from lily tepals, LhWRKY44, whose expression was closely associated with anthocyanin accumulation. Functional verification indicated that LhWRKY44 positively regulated anthocyanin accumulation. LhWRKY44 physically interacted with LhMYBSPLATTER and directly bound to the LhMYBSPLATTER promoter, which enhanced the effect of the LhMYBSPLATTER-LhbHLH2 MBW complex activator on anthocyanin accumulation. Moreover, EMSA and dual-luciferase assays revealed that LhWRKY44 activated and bound to the promoters of gene LhF3H and the intracellular anthocyanin-related glutathione S-transferase gene LhGST. Interestingly, our further results showed that LhWRKY44 participated in light and drought-induced anthocyanin accumulation, and improved the drought tolerance in lily via activating stress-related genes. These results generated a multifaceted regulatory mechanism for the LhWRKY44-meditaed enhancement by the environmental signal pathway of anthocyanin accumulation and expanded our understanding of the WRKY-mediated transcriptional regulatory hierarchy modulating anthocyanin accumulation in Asiatic hybrid lilies.

6.
J Environ Manage ; 345: 118848, 2023 Nov 01.
Artículo en Inglés | MEDLINE | ID: mdl-37660421

RESUMEN

The global nitrogen (N) cycle has emerged as an earth system process with more serious artificial disruption than climate change. Artificially synthesized reactive nitrogen (Nr) already accounts for nearly 50% of the total Nr in the earth system. The massive anthropogenic conversion of inert nitrogen (N2) to Nr is a major driver of imbalance and disruption of the earth's N cycle, where the artificial ammonia (NH3) synthesis process is the main trigger. Existing studies on life cycle environmental impacts of ammonia synthesis mainly focused on the greenhouse effect but lacked or underestimated the interference with the nitrogen cycle due to currently incomplete nitrogen footprint frameworks. In addition, the comprehensive evaluation of the nexus between nitrogen and carbon footprint of NH3 synthesis systems is also insufficient. Attempting to solve the above-mentioned problems, life cycle assessment models of seven ammonia synthesis systems were established considering different raw material pathways and production technologies under China's context, assisted by the Brightway2 platform. The general framework of nitrogen footprint accounting (GFNFA) that was established by the authors previously was employed to assess the ammonia synthesis on nitrogen footprint covered all ecosphere. The performance and hotspots of the system nitrogen footprint, carbon footprint (CF) and nitrogen-carbon nexus were then systematically quantified and analyzed. Results indicated that electrolysis-based ammonia powered by renewable and nuclear energy had the lowest Nr emission (0.499-1.148 kg Nr/t NH3) and carbon emission (592.822-1045.494 kg CO2-eq/t NH3). Among the seven ammonia synthesis systems investigated, biomass-based ammonia had the largest Nr emission and system nitrogen accumulation, and it converts the most N2 to Nr per ton ammonia produced, due to the extensive resources consumption and emissions during straw growth and direct Nr emission in gasification process. Thus, it caused the most significant disturbance to the earth's nitrogen cycle. The nexus between nitrogen and carbon footprints was revealed that the system's energy consumption was found to be a common driver through hotspots and contribution analysis. NH3 synthesis efficiency was the most determining factor in the system's Nr and carbon emissions. With a 15% increase in synthesis efficiency, nitrogen and carbon footprints can be reduced by more than 12.5%. This study can help researchers better understand the life cycle impacts of ammonia synthesis systems on earth's nitrogen and carbon cycle from multidisciplinary ecological origins.


Asunto(s)
Amoníaco , Huella de Carbono , Animales , China , Carbono , Nitrógeno , Estadios del Ciclo de Vida
7.
Front Med (Lausanne) ; 10: 1209439, 2023.
Artículo en Inglés | MEDLINE | ID: mdl-37727765

RESUMEN

Mammalian target of rapamycin (mTOR) signaling pathway is a major regulator of cell proliferation and metabolism, playing significant roles in proliferation, apoptosis, inflammation, and illness. More and more evidences showed that the mTOR signaling pathway affects hair follicle circulation and maintains the stability of hair follicle stem cells. mTOR signaling may be a critical cog in Vitamin D receptor (VDR) deficiency-mediated hair follicle damage and degeneration and related alopecia disorders. This review examines the function of mTOR signaling in hair follicles and hair diseases, and talks about the underlying molecular mechanisms that mTOR signaling regulates.

8.
Insights Imaging ; 14(1): 153, 2023 Sep 23.
Artículo en Inglés | MEDLINE | ID: mdl-37741945

RESUMEN

OBJECTIVE: It is critical to early monitor and manage small-for-gestational age (SGA) infants with truly adverse outcomes not detected by conventional methods. We aimed to explore the value of diffusion-weighted imaging (DWI)-based virtual magnetic resonance elastography (vMRE) and intravoxel incoherent motion (IVIM)-based biexponential and stretched exponential parameters in predicting adverse outcomes of SGA infants. METHODS: Twenty SGA infants with adverse outcomes and forty without adverse outcomes were included in this prospective study. One DWI-based vMRE parameter [the stiffness value (µdiff)], five IVIM-based parameters [true diffusion coefficient (D), pseudo-diffusion coefficient (D*), perfusion fraction (f), diffusion distribution coefficient (DDC), and diffusion heterogeneity index (Alpha)] and apparent diffusion coefficient (ADC) were calculated and compared between groups. The predictive efficiency was compared by the logistic regression analysis and receiver operating characteristic curve analysis. The relationship between the µdiff value with gestational age was also evaluated. RESULTS: The placental µdiff value was remarkably higher, and the f, DDC, and ADC values were considerably lower in the SGA infants with adverse outcomes compared with those without adverse outcomes. The µdiff and f value were predictive risk factors for SGA infants with adverse outcomes. A combined predictive model (µdiff and f) improved the predictive efficacy. Moreover, there was no statistically significant correlation between the placental stiffness value and gestational age. CONCLUSIONS: Functional MRI parameters to quantify placenta elastography and microcirculation in SGA patients. This might be a useful tool to assess placental function and a vital non-invasive supplement for predicting adverse outcomes of SGA infants. CRITICAL RELEVANCE STATEMENT: This prospective study shows DWI-based virtual magnetic resonance elastography and intravoxel incoherent motion-based functional parameters to quantify placenta elastography and microcirculation in small-for-gestational-age patients, which could complement existing non-invasive methods for monitoring and predicting neonatal perinatal adverse outcome. KEY POINTS: • vMRE is an emerging non-invasive imaging technique for evaluating placenta stiffness. • SGA infants with adverse outcome have stiffer placental elasticity and lower microcirculation. • Risk factors combination displayed better efficacy in predicting adverse outcomes of SGA.

9.
Discov Nano ; 18(1): 106, 2023 Aug 29.
Artículo en Inglés | MEDLINE | ID: mdl-37642818

RESUMEN

Herein, we have constructed a magnetic graphene field-effect transistor biosensor (MGFETs) for highly sensitive detection of cardiac troponin I (CTNI). Graphene films transferred to ITO conductive glass as conductive channels. CTNI aptamer was immobilized onto the graphene film via 1-pyrene-butanoic acid succinimidyl ester (PBASE) to capture CTNI. Magnetic nanobeads (MBs) modified with CTNI antibody were added to the reaction chamber to form an aptamer/CTNI/antibody/magnetic nanobeads sandwich-type complex. We found that the magnetic force exerted on the complex leads to an impedance change of the graphene film. The reason for this result is that the magnetic field exerts an influence on the MBs, causing CTNI aptamer strand to bend, resulting in a change in the distance between the double conductive layers of the graphene film surface and the test solution. With periodic sampling integration, different concentrations of CTNI can be detected with high sensitivity. Due to the stringent recognition capability and high affinity between the CTNI aptamer and CTNI, MGFETs have the potential to detect various types of proteins. Furthermore, MGFETs also have the potential to be utilized for the detection of DNA or specific cells in the future.

10.
Acta Radiol ; 64(10): 2802-2811, 2023 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-37553913

RESUMEN

BACKGROUND: Radiomics nomogram analysis is widely preoperatively used to assess gene mutations in various tumors. PURPOSE: To explore the value of computed tomography (CT)-based radiomics nomogram analysis for assessing BRCA gene mutation status of patients with high-grade serous ovarian cancer (HGSOC). MATERIAL AND METHODS: In total, 96 patients with HGSOC were retrospectively screened and randomly divided into primary (n = 68) and validation cohorts (n = 28). The clinical model was constructed based on clinical features and CT morphological features using univariate and multivariate logistic analyses. Maximum-relevance and minimum-redundancy (mRMR) and least absolute shrinkage and selection operator (LASSO) were performed for feature dimensionality reduction and radiomics score was calculated. The nomogram model combining the clinical model and the radiomics score was constructed using multivariate logistic regression. Receiver operating characteristic (ROC) curves were generated to assess models' performance. The calibration analysis and decision curve analysis (DCA) were also performed. RESULTS: The clinical model consisted of CA125 level and supradiaphragmatic lymphadenopathy and yielded an area under the curve (AUC) of 0.69 (primary cohort) and 0.81 (validation cohort). The radiomics model was built with seven selected features and showed an AUC of 0.87 (primary cohort) and 0.81 (validation cohort). The nomogram finally showed the highest AUC of 0.89 (primary cohort) and 0.87 (validation cohort). The nomogram presented favorable calibrations in both the primary and validation cohorts. DCA further confirmed the clinical benefits of the constructed nomogram. CONCLUSION: CT-based radiomics nomogram provides a non-invasive method to discriminate BRCA gene mutation status of HGSOC and potentially helps develop precise medical strategies.

11.
Molecules ; 28(13)2023 Jun 28.
Artículo en Inglés | MEDLINE | ID: mdl-37446712

RESUMEN

The purpose of this study was to compare the antioxidant activity of litsea cubeba oil (LCO), cinnamon oil (CO), anise oil (AO), and eucalyptus oil (EUC) in vitro. The chemical compositions of the essential oils (EOs) were analyzed using gas chromatography-mass spectrometry (GC-MS). The antioxidant activity of the four EOs was evaluated through scavenging DPPH free radicals, chelating Fe2+, scavenging hydroxyl free radicals, and inhibiting yolk lipid peroxidation. The results showed that the major compounds found in LCO, CO, AO, and EUC are citral (64.29%), cinnamaldehyde (84.25%), anethole (78.51%), and 1,8-cineole (81.78%), respectively. The four EOs all had certain antioxidant activity. The ability to scavenge DPPH radical was ranked in the order of LCO > CO > AO > EUC. The hydroxyl radical scavenging ability was ranked in the order of EUC > CO > LCO > AO. The chelating Fe2+ capacity was ranked in the order of EUC > AO > CO > LCO. The yolk lipid peroxidation inhibition ability was ranked in the order of CO > AO > EUC > LCO. In different antioxidant activity assays, the antioxidant activity of the EOs was different. It was speculated that the total antioxidant activity of an EO may be the result of the joint action of different antioxidant capacities.


Asunto(s)
Apiaceae , Eucalyptus , Litsea , Aceites Volátiles , Pimpinella , Aceites Volátiles/farmacología , Aceites Volátiles/química , Antioxidantes/farmacología , Antioxidantes/química , Eucalyptus/química , Litsea/química , Cinnamomum zeylanicum , Aceite de Eucalipto , Radicales Libres
12.
Zookeys ; 1158: 163-177, 2023.
Artículo en Inglés | MEDLINE | ID: mdl-37234253

RESUMEN

Rodents are well known as both seed predators and dispersers of various plant species in forest ecosystems, and they play an important role in the regeneration of vegetation. Thus, the research on seed selection and vegetation regeneration by sympatric rodents is an interesting topic. To understand the characteristics of preferences of rodents for different seeds, a semi-natural enclosure experiment was performed with four rodent species (Apodemuspeninsulae, Apodemusagrarius, Tscherskiatriton, and Clethrionomysrufocanus) and the seeds of seven plant species (Pinuskoraiensis, Corylusmandshurica, Quercusmongolica, Juglansmandshurica, Armeniacasibirica, Prunussalicina, and Cerasustomentosa) to investigate the differentiation in niches and patterns of resource utilization of sympatric rodents. The results showed that all the rodents had consumed many seeds of Pi.koraiensis, Co.mandshurica, and Q.mongolica but differed significantly in how they selected the different seeds. The rate of utilization (Ri) of Pi.koraiensis, Co.mandshurica, and Q.mongolica exhibited the highest values. The Ei values indicated that the rodents tested exhibited differences in their priorities used to select the seeds from different plant species. All four species of rodents exhibited obvious preferences for certain seeds. Korean field mice preferentially consumed the seeds of Q.mongolica, Co.mandshurica, and Pi.koraiensis. Striped field mice favor the seeds of Co.mandshurica, Q.mongolica, P.koraiensis, and Nanking cherry. Greater long-tailed hamsters prefer to consume the seeds of Pi.koraiensis, Co.mandshurica, Q.mongolica, Pr.salicina, and Ce.tomentosa. Clethrionomysrufocanus likes to eat the seeds of Pi.koraiensis, Q.mongolica, Co.mandshurica, and Ce.tomentosa. The results supported our hypothesis that sympatric rodents overlap in food selection. However, each rodent species has a marked preference for food selection, and different rodent species differ in their food preferences. This reflects the role of distinct food niche differentiation in their coexistence.

13.
Zookeys ; 1141: 169-183, 2023.
Artículo en Inglés | MEDLINE | ID: mdl-37234965

RESUMEN

To discover the differences in hoarding strategies of rodents for different seeds in different habitats, we labelled and released three different types of seeds, including Pinuskoraiensis, Corylusmandshurica, and Quercusmongolica, in temperate forests of northeastern China and investigated the fate of seeds in four different habitats that included a broad-leaved forest, mixed-forest edge, mixed forest, and artificial larch forest. Our research showed that the hoarding strategy of rodents was found to vary substantially in different habitats. The survival curves of seeds from different habitats showed the same trend, but the rates of consumption in different habitats varied. More than 50% of the seeds in the four habitats were consumed by the tenth day. It took 20 days to consume more than 70% of the seeds. The rate of consumption of P.koraiensis seeds reached 96.70%; 99.09% of the C.mandshurica seeds were consumed, and 93.07% of the Q.mongolica seeds were consumed. The seeds were consumed most quickly in the artificial larch forest. In general, most of the early seeds were quickly devoured. After day 20, the consumption gradually decreased. Rodents found the seeds in the artificial larch forest in a shorter average time than those in the other types of forests. The average earliest discovery time was 1.4 ± 0.9 d (1-3 d). The average earliest discovery time in all the other three habitats exceeded 7 d. The median removal times (MRT) was distributed around the seeds at 14.24 ± 10.53 d (1-60 d). There were significant differences in the MRT among different habitats. It was shortest in the artificial larch forest at 7.67 ± 6.80 d (1-28 d). In contrast, the MRT in the broad-leaved forest was the longest at 17.52 ± 12.91 d (4-60 d). There were significant differences in the MRT between the artificial larch forest and the other habitats. There was less predation of the three types of seeds at the mixed-forest edge, and the most seeds were dispersed. The rates of predation of the P.koraiensis, C.mandshurica, and Q.mongolica seeds were 28.33%, 15.83%, and 44.0%, and 59.17%, 84.17%, and 48.0% of the seeds were dispersed, respectively. The average dispersal distances of all the seeds were less than 6 m, and the longest distance recorded was 18.66 m. The dispersal distances and burial depths differed significantly among the four types of habitats. The distance of seed dispersal was primarily distributed in 1-6 m.

14.
Gene ; 874: 147485, 2023 Jul 20.
Artículo en Inglés | MEDLINE | ID: mdl-37187246

RESUMEN

Lilium pumilum has a strong salt tolerance. However, the molecular mechanism underlying its salt tolerance remains unexplored. Here, LpSOS1 was cloned from L. pumilum and found to be significantly enriched at high NaCl concentrations (100 mM). In tobacco epidermal cells, localization analysis showed that the LpSOS1 protein was primarily located in the plasma membrane. Overexpression of LpSOS1 resulted in up-regulation of salt stress tolerance in Arabidopsis, as indicated by reduced malondialdehyde levels and Na+/K+ ratio, and increased activity of antioxidant reductases (including superoxide dismutase, peroxidase, and catalase). Treatment with NaCl resulted in improved growth, as evidenced by increased biomass, root length, and lateral root growth, in both sos1 mutant (atsos1) and wild-type (WT) Arabidopsis plants that overexpressed LpSOS1, Under NaCl treatment,atsos1 and WT Arabidopsis plants overexpressing LpSOS1 exhibited better growth, with higher biomass, root length, and lateral root quantity, whereas in the absence of LpSOS1 overexpression, the plants of both lines were wilted and chlorotic and even died under salt stress. When exposed to salt stress, the expression of stress-related genes was notably upregulated in the LpSOS1 overexpression line of Arabidopsis as compared to the WT. Our findings indicate that LpSOS1 enhances salt tolerance in plants by regulating ion homeostasis, reducing Na+/K+ ratio, thereby protecting the plasma membrane from oxidative damage caused by salt stress, and enhancing the activity of antioxidant enzymes. Therefore, the increased salt tolerance conferred by LpSOS1 in plants makes it a potential bioresource for breeding salt-tolerant crops. Further investigation into the mechanisms underlying lily's resistance to salt stress would be advantageous and could serve as a foundation for future molecular improvements.


Asunto(s)
Arabidopsis , Lilium , Tolerancia a la Sal/genética , Lilium/genética , Plantas Modificadas Genéticamente/metabolismo , Arabidopsis/metabolismo , Antiportadores/genética , Antioxidantes , Cloruro de Sodio/farmacología , Cloruro de Sodio/metabolismo , Intercambiadores de Sodio-Hidrógeno/genética , Intercambiadores de Sodio-Hidrógeno/metabolismo , Fitomejoramiento , Regulación de la Expresión Génica de las Plantas , Proteínas de Plantas/genética , Proteínas de Plantas/metabolismo
15.
IEEE Trans Pattern Anal Mach Intell ; 45(1): 980-998, 2023 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-35077355

RESUMEN

Detecting hot social events (e.g., political scandal, momentous meetings, natural hazards, etc.) from social messages is crucial as it highlights significant happenings to help people understand the real world. On account of the streaming nature of social messages, incremental social event detection models in acquiring, preserving, and updating messages over time have attracted great attention. However, the challenge is that the existing event detection methods towards streaming social messages are generally confronted with ambiguous events features, dispersive text contents, and multiple languages, and hence result in low accuracy and generalization ability. In this paper, we present a novel reinForced, incremental and cross-lingual social Event detection architecture, namely FinEvent, from streaming social messages. Concretely, we first model social messages into heterogeneous graphs integrating both rich meta-semantics and diverse meta-relations, and convert them to weighted multi-relational message graphs. Second, we propose a new reinforced weighted multi-relational graph neural network framework by using a Multi-agent Reinforcement Learning algorithm to select optimal aggregation thresholds across different relations/edges to learn social message embeddings. To solve the long-tail problem in social event detection, a balanced sampling strategy guided Contrastive Learning mechanism is designed for incremental social message representation learning. Third, a new Deep Reinforcement Learning guided density-based spatial clustering model is designed to select the optimal minimum number of samples required to form a cluster and optimal minimum distance between two clusters in social event detection tasks. Finally, we implement incremental social message representation learning based on knowledge preservation on the graph neural network and achieve the transferring cross-lingual social event detection. We conduct extensive experiments to evaluate the FinEvent on Twitter streams, demonstrating a significant and consistent improvement in model quality with 14%-118%, 8%-170%, and 2%-21% increases in performance on offline, online, and cross-lingual social event detection tasks.

16.
J Mol Biol ; 435(1): 167818, 2023 01 15.
Artículo en Inglés | MEDLINE | ID: mdl-36089056

RESUMEN

Vesicle fusion is of crucial importance to neuronal communication at neuron terminals. The exquisite but complex fusion machinery for neurotransmitter release is tightly controlled and regulated by protein/neurotransmitter-membrane interactions. Computational 'microscopies', in particular molecular dynamics simulations and related techniques, have provided notable insight into the physiological process over the past decades, and have made enormous contributions to fields such as neurology, pharmacology and pathophysiology. Here we review the computational advances of protein/neurotransmitter-membrane interactions related to presynaptic vesicle-membrane fusion and neurotransmitter release, and outline the in silico challenges ahead for understanding this important physiological process.


Asunto(s)
Fusión de Membrana , Neurotransmisores , Terminales Presinápticos , Transmisión Sináptica , Vesículas Sinápticas , Neurotransmisores/metabolismo , Terminales Presinápticos/fisiología , Transmisión Sináptica/fisiología , Biología Computacional
17.
Front Bioeng Biotechnol ; 10: 955233, 2022.
Artículo en Inglés | MEDLINE | ID: mdl-35910026

RESUMEN

The fisheye camera has a field of view (FOV) of over 180°, which has advantages in the fields of medicine and precision measurement. Ordinary pinhole models have difficulty in fitting the severe barrel distortion of the fisheye camera. Therefore, it is necessary to apply a nonlinear geometric model to model this distortion in measurement applications, while the process is computationally complex. To solve the problem, this paper proposes a model-free stereo calibration method for binocular fisheye camera based on neural-network. The neural-network can implicitly describe the nonlinear mapping relationship between image and spatial coordinates in the scene. We use a feature extraction method based on three-step phase-shift method. Compared with the conventional stereo calibration of fisheye cameras, our method does not require image correction and matching. The spatial coordinates of the points in the common field of view of binocular fisheye camera can all be calculated by the generalized fitting capability of the neural-network. Our method preserves the advantage of the broad field of view of the fisheye camera. The experimental results show that our method is more suitable for fisheye cameras with significant distortion.

18.
Plant Physiol ; 190(1): 387-402, 2022 08 29.
Artículo en Inglés | MEDLINE | ID: mdl-35670734

RESUMEN

The bulbil is an important vegetative reproductive organ in triploid tiger lily (Lilium lancifolium). Based on our previously obtained transcriptome data, we screened two WUSCHEL-related homeobox (WOX) genes closely related to bulbil formation, LlWOX9 and LlWOX11. However, the biological functions and regulatory mechanisms of LlWOX9 and LlWOX11 are unclear. In this study, we cloned the full-length coding sequences of LlWOX9 and LlWOX11. Transgenic Arabidopsis (Arabidopsis thaliana) showed increased branch numbers, and the overexpression of LlWOX9 and LlWOX11 in stem segments promoted bulbil formation, while the silencing of LlWOX9 and LlWOX11 inhibited bulbil formation, indicating that LlWOX9 and LlWOX11 are positive regulators of bulbil formation. Cytokinin type-B response regulators could bind to the promoters of LlWOX9 and LlWOX11 and promote their transcription. LlWOX11 could enhance cytokinin pathway signaling by inhibiting the transcription of type-A LlRR9. Our study enriches the understanding of the regulation of plant development by the WOX gene family and lays a foundation for further research on the molecular mechanism of bulbil formation in lily.


Asunto(s)
Proteínas de Arabidopsis , Arabidopsis , Lilium , Arabidopsis/genética , Arabidopsis/metabolismo , Proteínas de Arabidopsis/genética , Proteínas de Arabidopsis/metabolismo , Citocininas/metabolismo , Regulación de la Expresión Génica de las Plantas , Genes Homeobox/genética , Genes de Plantas , Proteínas de Homeodominio/genética , Proteínas de Homeodominio/metabolismo , Lilium/genética , Lilium/metabolismo
19.
Molecules ; 26(23)2021 Dec 06.
Artículo en Inglés | MEDLINE | ID: mdl-34885991

RESUMEN

Inflammation caused by bacterial lipopolysaccharide (LPS) disrupts epithelial homeostasis and threatens both human and animal health. Therefore, the discovery and development of new anti-inflammatory drugs is urgently required. Plant-derived essential oils (EOs) have good antioxidant and anti-inflammatory activities. Thus, this study aims to screen and evaluate the effects of cinnamon oil and eucalyptus oil on anti-inflammatory activities. The associated evaluation indicators include body weight gain, visceral edema coefficient, superoxide dismutase (SOD), glutathione peroxidase (GSH-Px), malondialdehyde (MDA), nitrogen monoxide (NO), interleukin-6 (IL-6), interleukin-10 (IL-10), tumor necrosis factor alpha (TNF-α), Urea, Crea, ALT, TLR4, MyD88, NF-κB, IκB-α, iNOS, and Mn-SOD. In addition, tissue injury was determined by H&E staining. The results revealed that cinnamon oil and eucalyptus oil suppressed inflammation by decreasing SOD, TNF-α, and NF-κB levels. We also found that cinnamon oil increased the level of GSH-Px, MDA, and Mn-SOD, as well as the visceral edema coefficient of the kidney and liver. Altogether, these findings illustrated that cinnamon oil and eucalyptus oil exhibited wide antioxidant and anti-inflammatory activities against LPS-induced inflammation.


Asunto(s)
Antiinflamatorios/administración & dosificación , Antioxidantes/administración & dosificación , Cinnamomum zeylanicum/química , Aceite de Eucalipto/administración & dosificación , Eucalyptus/química , Lipopolisacáridos/efectos adversos , Aceites Volátiles/administración & dosificación , Animales , Animales no Consanguíneos , Citocinas/sangre , Femenino , Inflamación/sangre , Inflamación/inducido químicamente , Inflamación/tratamiento farmacológico , Lipopolisacáridos/administración & dosificación , Masculino , Malondialdehído/sangre , Ratones , Óxido Nítrico/sangre , Transducción de Señal/efectos de los fármacos , Superóxido Dismutasa/sangre , Resultado del Tratamiento , Aumento de Peso/efectos de los fármacos
20.
BMC Plant Biol ; 21(1): 563, 2021 Nov 29.
Artículo en Inglés | MEDLINE | ID: mdl-34844560

RESUMEN

BACKGROUND: Anthocyanins, which belong to flavonoids, are widely colored among red-purple pigments in the Asiatic hybrid lilies (Lilium spp.). Transcription factor (TF) LhMYBSPLATTER (formerly known as LhMYB12-Lat), identified as the major kernel protein, regulating the anthocyanin biosynthesis pathway in 'Tiny Padhye' of Tango Series cultivars, which the pigmentation density is high in the lower half of tepals and this patterning is of exceptional ornamental value. However, the research on mechanism of regulating the spatial and temporal expression differences of LhMYBSPLATTER, which belongs to the R2R3-MYB subfamily, is still not well established. To explore the molecular mechanism of directly related regulatory proteins of LhMYBSPLATTER in the anthocyanin pigmentation, the yeast one-hybrid (Y1H) cDNA library was constructed and characterized. RESULTS: In this study, we describe a yeast one-hybrid library to screen transcription factors that regulate LhMYBSPLATTER gene expression in Lilium, with the library recombinant efficiency of over 98%. The lengths of inserted fragments ranged from 400 to 2000 bp, and the library capacity reached 1.6 × 106 CFU of cDNA insert, which is suitable to fulfill subsequent screening. Finally, seven prey proteins, including BTF3, MYB4, IAA6-like, ERF4, ARR1, ERF WIN1-like, and ERF061 were screened by the recombinant bait plasmid and verified by interaction with the LhMYBSPLATTER promoter. Among them, ERFs, AUX/IAA, and BTF3 may participate in the negative regulation of the anthocyanin biosynthesis pathway in Lilium. CONCLUSION: A yeast one-hybrid library of lily was successfully constructed in the tepals for the first time. Seven candidate TFs of LhMYBSPLATTER were screened, which may provide a theoretical basis for the study of floral pigmentation.


Asunto(s)
Regulación de la Expresión Génica de las Plantas/fisiología , Lilium/metabolismo , Proteínas de Plantas/metabolismo , Factores de Transcripción/metabolismo , Secuencia de Bases , Clonación Molecular , ADN de Plantas , Lilium/genética , Proteínas de Plantas/genética , Plásmidos , Regiones Promotoras Genéticas , Factores de Transcripción/genética , Técnicas del Sistema de Dos Híbridos
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