Hybrid immunity in older adults is associated with reduced SARS-CoV-2 infections following BNT162b2 COVID-19 immunisation.

BACKGROUND: Older adults, particularly in long-term care facilities (LTCF), remain at considerable risk from SARS-CoV-2. Data on the protective effect and mechanisms of hybrid immunity are skewed towards young adults precluding targeted vaccination strategies. METHODS: A single-centre longitudinal seroprevalence vaccine response study was conducted with 280 LCTF participants (median 82 yrs, IQR 76-88 yrs; 95.4% male). Screening by SARS-CoV-2 polymerase chain reaction with weekly asymptomatic/symptomatic testing (March 2020-October 2021) and serology pre-/post-two-dose Pfizer-BioNTech BNT162b2 vaccination for (i) anti-nucleocapsid, (ii) quantified anti-receptor binding domain (RBD) antibodies at three time-intervals, (iii) pseudovirus neutralisation, and (iv) inhibition by anti-RBD competitive ELISA were conducted. Neutralisation activity: antibody titre relationship was assessed via beta linear-log regression and RBD antibody-binding inhibition: post-vaccine infection relationship by Wilcoxon rank sum test. RESULTS: Here we show neutralising antibody titres are 9.2-fold (95% CI 5.8-14.5) higher associated with hybrid immunity (p < 0.00001); +7.5-fold (95% CI 4.6-12.1) with asymptomatic infection; +20.3-fold, 95% (CI 9.7-42.5) with symptomatic infection. A strong association is observed between antibody titre: neutralising activity (p < 0.00001) and rising anti-RBD antibody titre: RBD antibody-binding inhibition (p < 0.001), although 18/169 (10.7%) participants with high anti-RBD titre (>100BAU/ml), show inhibition <75%. Higher RBD antibody-binding inhibition values are associated with hybrid immunity and reduced likelihood of infection (p = 0.003). CONCLUSIONS: Hybrid immunity in older adults was associated with considerably higher antibody titres, neutralisation and inhibition capacity. Instances of high anti-RBD titre with lower inhibition suggests antibody quantity and quality as independent potential correlates of protection, highlighting added value of measuring inhibition over antibody titre alone to inform vaccine strategy.

Older adults continue to be at risk of COVID-19, particularly in residential care home settings. We investigated the effect of infection and vaccination on antibody development and subsequent SARS-CoV-2 infection in older adults. Antibodies are proteins that the immune system produces on infection or vaccination that can help respond to subsequent infection with SARS-CoV-2. We found that older adults produce antibodies to SARS-CoV-2 after 2-doses of Pfizer BioNTech BNT162b2 vaccine. The strongest immune responses were seen among those older adults who also had prior history of infection. The results highlight the importance of both antibody quality and quantity when considering possible indicators of protection against COVID-19 and supports the need for a third, booster, vaccination in this age group..

Transmission of SARS-CoV-2 by children attending school. Interim report on an observational, longitudinal sampling study of infected children, contacts, and the environment

BackgroundAssessing transmission of SARS-CoV-2 by children in schools is of critical importance to inform public health action. We assessed frequency of acquisition of SARS-CoV-2 by contacts of children with COVID-19 in schools and households, as well as the amount of virus shed into the air and onto fomites in both settings. MethodsCases of COVID-19 in children in London schools were identified via notification. Weekly sampling for 3-4 weeks and PCR testing for SARS-CoV-2 of immediate classroom contacts (the "bubble"), non-bubble school contacts, and household contacts was undertaken supported by genome sequencing, along with surface and air sampling in the school and home environment. ResultsWithin schools, secondary transmission was not detected in 28 individual bubble contacts, representing 10 distinct bubble classes. Across 8 non-bubble classes, 3/62 pupils tested positive- all three were asymptomatic and tested positive in one setting on the same day, unrelated to the original index case. In contrast, the secondary attack rate in naive household contacts was 14.3% (5/35) rising to 19.1% (9/47) when considering all household contacts. Environmental contamination with SARS-CoV-2 was rare in schools, regardless of school type; fomite SARS-CoV-2 RNA was identified in 4/189 (2.1%) samples in bubble classrooms, 2/127 (1.6%) samples in non-bubble classrooms, and 5/130 (3.8%) samples in washrooms. This contrasted with fomites in households, where SARS-CoV-2 RNA was identified in 60/248 (24.2%) bedroom samples, 66/241 (27.4%) communal room samples, and 21/188 (11.2%) bathroom samples. Air sampling identified SARS-CoV-2 RNA in just 1/68 (1.5%) of school air samples, compared with 21/85 (24.7%) of air samples taken in homes. SummaryThe low levels of environmental contamination in schools are consistent with low transmission frequency and adequate levels of cleaning and ventilation in schools during the period of study. Secondary transmission in schools was rare. The high frequency of secondary transmission in households associated with evident viral shedding throughout the home suggests a need to improve advice to households with infection in children in order to prevent onward community spread by sibling and adult contacts. The data highlight that transmission from children is very likely to occur when precautions are reduced.

SARS-CoV-2 recruits a haem metabolite to evade antibody immunity

The coronaviral spike is the dominant viral antigen and the target of neutralizing antibodies. We show that SARS-CoV-2 spike binds biliverdin and bilirubin, the tetrapyrrole products of haem metabolism, with nanomolar affinity. Using cryo-electron microscopy and X-ray crystallography we mapped the tetrapyrrole interaction pocket to a deep cleft on the spike N-terminal domain (NTD). At physiological concentrations, biliverdin significantly dampened the reactivity of SARS-CoV-2 spike with immune sera and inhibited a subset of neutralizing antibodies. Access to the tetrapyrrole-sensitive epitope is gated by a flexible loop on the distal face of the NTD. Accompanied by profound conformational changes in the NTD, antibody binding requires relocation of the gating loop, which folds into the cleft vacated by the metabolite. Our results indicate that the virus co-opts the haem metabolite for the evasion of humoral immunity via allosteric shielding of a sensitive epitope and demonstrate the remarkable structural plasticity of the NTD.

Estimates of the rate of infection and asymptomatic COVID-19 disease in a population sample from SE England

BackgroundUnderstanding of the true asymptomatic rate of infection of SARS-CoV-2 is currently limited, as is understanding of the population-based seroprevalence after the first wave of COVID-19 within the UK. The majority of data thus far come from hospitalised patients, with little focus on general population cases, or their symptoms. MethodsWe undertook enzyme linked immunosorbent assay characterisation of IgM and IgG responses against SARS-CoV-2 spike glycoprotein and nucleocapsid protein of 431 unselected general-population participants of the TwinsUK cohort from South-East England, aged 19-86 (median age 48; 85% female). 382 participants completed prospective logging of 14 COVID-19 related symptoms via the COVID Symptom Study App, allowing consideration of serology alongside individual symptoms, and a predictive algorithm for estimated COVID-19 previously modelled on PCR positive individuals from a dataset of over 2 million. FindingsWe demonstrated a seroprevalence of 12% (51participants of 431). Of 48 seropositive individuals with full symptom data, nine (19%) were fully asymptomatic, and 16 (27%) were asymptomatic for core COVID-19 symptoms: fever, cough or anosmia. Specificity of anosmia for seropositivity was 95%, compared to 88% for fever cough and anosmia combined. 34 individuals in the cohort were predicted to be Covid-19 positive using the App algorithm, and of those, 18 (52%) were seropositive. InterpretationSeroprevalence amongst adults from London and South-East England was 12%, and 19% of seropositive individuals with prospective symptom logging were fully asymptomatic throughout the study. Anosmia demonstrated the highest symptom specificity for SARS-CoV-2 antibody response. FundingNIHR BRC, CDRF, ZOE global LTD, RST-UKRI/MRC

Alterações hematológicas e perfil fenotípico das células mononucleares do sangue periférico de pacientes com malária por P. vivax e P. falciparum na fase aguda e de convalescença da infecção / Hematological and phenotypic profile of peripheral blood mononuclear cells from patients with malaria by P. vivax and P. falciparum in acute and convalescent infection

A malária continua sendo uma das doenças parasitárias mais importantes do mundo, sendo responsável por 300-500 milhões de casos por ano. A resistência dos plasmódios aos medicamentos antimaláricos e dos vetores aos inseticidas agrava ainda mais a situação. Neste contexto, o desenvolvimento de novos métodos terapêuticos e profiláticos é de suma importância. Apesar dos esforços, uma vacina eficaz ainda não foi desenvolvida. Atualmente sabe-se que a resposta imune antiplasmódio pode ser responsável pela proteção e patogênese da doença. Porém, os mecanismos envolvidos na imunidade protetora e/ou patológica ainda não estão esclarecidos. Assim sendo, o presente trabalho objetiva avaliar as alterações hematológicas e o perfil imunofenotípico de células mononucleares de sangue periférico de indivíduos naturalmente infectados por P. vivax (n=47) ou por P. falciparum (n=24) provenientes de área endêmica brasileira (PV-RO), na fase aguda e de convalescença. Para isso, sangue dos voluntários foi coletado para realização do exame parasitológico, do hemograma completo e para obtenção de células mononucleadas para a avaliação do perfil imunofenotípico através de citometria de fluxo. As populações alvo incluíram células CD4(positivo), CD8(positivo), linfócitos T, Tgamadelta, células CD3(negativo) e subpopulações produtoras de diferentes citocinas (IFN-gama, TNF-alfa, IL-2, IL-4, IL-10); células NK, NKT e subpopulações CD4(positivo) e CD8(positivo); células B e subpopulações (incluindo populações produtoras de TGF-beta). Na fase aguda, pacientes com malária vivax e falciparum apresentaram plaquetopenia, leucopenia e aumento no número de bastões e também apresentaram um aumento no percentual de células CD4(positivo) CD8(negativo) e redução no percentual de células B CD5(negativo) CD11b(negativo). Pacientes com P. vivax apresentaram aumento no percentual de: células CD4(positivo), CD8(positivo), TCRgamadelta(positivo) e CD3(negativo) produtoras de TNF-alfa; células CD8 ativadas, células T e células CD3(negativo) produtoras de IL-10; células B expressando TGF-beta. Nos indivíduos infectados por P. falciparum foi observado um aumento de células T TNF-alfa(positivo) e redução de células T citotóxicas. Na fase de convalescença, os dois grupos apresentaram redução de células Tgamadelta e CD3(negativo) produtoras de TNF-alfa; células CD3(negativo) IL-2(positivo); células CD3(negativo) IL-10(positivo). Apenas os indivíduos infectados com P. vivax apresentaram redução de CD4(positivo) CD8(negativo); células B CD5(positivo) CD11b(negativo); células CD8(positivo) produtoras de TNF-alfa e de TNF-alfa e IFN-gama de forma simultânea; além do aumento de células B CD5(negativo) CD11b(negativo). Tanto o pacientes com P. falciparum quanto com o P. vivax apresentaram significante diminuição no número de linfócitos e apenas algumas subpopulações celulares circulantes se encontravam alteradas. Entretanto, alterações significativas no perfil de expressão de citocinas foram observadas principalmente nos pacientes com P. vivax. Dentro desse contexto, na fase aguda da malária por P. vivax houve aumento tanto no percentual de células com marcação para citocinas do tipo 1 quanto para citocinas do tipo 2. Como todos os pacientes incluídos no trabalho apresentaram malária não complicada, pode-se supor que o mais importante no controle da gravidade da doença é justamente o balanço entre resposta pró e anti-inflamatória.