Mechanical leaf removal for improved Botrytis bunch rot control in Vitis vinifera 'Pinot gris' and 'Pinot noir' grapevines in the northeastern U.S.

Late-season bunch rot can cause substantial yield loss in grapevines grown in humid regions. Fruit zone leaf removal has been widely used to reduce bunch rot and pesticide applications through improvements in canopy microclimate and grape cluster morphology. In this study, we evaluated if mechanical leaf removal can be a valid alternative to a labor-intensive manual application by comparing pre-bloom manual (PB-MA) and mechanical (PB-ME) leaf removal. We also evaluated the effects of the timing of mechanical application, pre-bloom (PB-ME) versus fruit set (FS-ME), on fruit traits and bunch rot, caused by Botrytis cinerea. Our trials were conducted on two Vitis vinifera 'Pinot noir' and 'Pinot gris' vineyards in the northeastern US over two seasons (2017-2018). Major findings were overall consistent between cultivars and years. Leaf removal provided reductions in fruit-zone canopy density regardless of method or timing. In general, PB-ME provided similar shifts in cluster morphological traits to PB-MA, including lower number of berries per cluster, cluster compactness, and cluster weight compared to control (no leaf removal) vines. At harvest, both pre-bloom leaf removal methods equally reduced Botrytis bunch rot severity, while Botrytis bunch rot incidence in Pinot noir was lowest for PB-ME in one year and PB-MA in the next year. When comparing timing of mechanical leaf removal, FS-ME provided Botrytis bunch rot reductions similar to PB-ME, without effects on cluster weight. Thus, under our growing conditions, FS-ME was considered the best mechanical leaf removal option to help manage Botrytis bunch rot without causing undesirable yield reductions.

NYUS.2: an automated machine learning prediction model for the large-scale real-time simulation of grapevine freezing tolerance in North America.

Accurate and real-time monitoring of grapevine freezing tolerance is crucial for the sustainability of the grape industry in cool climate viticultural regions. However, on-site data are limited due to the complexity of measurement. Current prediction models underperform under diverse climate conditions, which limits the large-scale deployment of these methods. We combined grapevine freezing tolerance data from multiple regions in North America and generated a predictive model based on hourly temperature-derived features and cultivar features using AutoGluon, an automated machine learning engine. Feature importance was quantified by AutoGluon and SHAP (SHapley Additive exPlanations) value. The final model was evaluated and compared with previous models for its performance under different climate conditions. The final model achieved an overall 1.36°C root-mean-square error during model testing and outperformed two previous models using three test cultivars at all testing regions. Two feature importance quantification methods identified five shared essential features. Detailed analysis of the features indicates that the model has adequately extracted some biological mechanisms during training. The final model, named NYUS.2, was deployed along with two previous models as an R shiny-based application in the 2022-23 dormancy season, enabling large-scale and real-time simulation of grapevine freezing tolerance in North America for the first time.

Functionally discrete fine roots differ in microbial assembly, microbial functional potential, and produced metabolites.

Traditionally, fine roots were grouped using arbitrary size categories, rarely capturing the heterogeneity in physiology, morphology and functionality among different fine root orders. Fine roots with different functional roles are rarely separated in microbiome-focused studies and may result in confounding microbial signals and host-filtering across different root microbiome compartments. Using a 26-year-old common garden, we sampled fine roots from four temperate tree species that varied in root morphology and sorted them into absorptive and transportive fine roots. The rhizoplane and rhizosphere were characterized using 16S rRNA gene and internal transcribed spacer region amplicon sequencing and shotgun metagenomics for the rhizoplane to identify potential microbial functions. Fine roots were subject to metabolomics to spatially characterize resource availability. Both fungi and bacteria differed according to root functional type. We observed additional differences between the bacterial rhizoplane and rhizosphere compartments for absorptive but not transportive fine roots. Rhizoplane bacteria, as well as the root metabolome and potential microbial functions, differed between absorptive and transportive fine roots, but not the rhizosphere bacteria. Functional differences were driven by sugar transport, peptidases and urea transport. Our data highlights the importance of root function when examining root-microbial relationships, emphasizing different host selective pressures imparted on different root microbiome compartments.

Evaluating integrated pest management tactics for spotted lanternfly management in vineyards.

BACKGROUND: Spotted lanternfly, an invasive planthopper which was first found in 2014 in the eastern USA, has become a significant pest to vineyards. Sap-feeding by this pest has been associated with plant stress and yield declines, and current management depends entirely on the prophylactic use of insecticides. Our study explored two new integrated pest management (IPM) tactics against spotted lanternfly to reduce the negative effects of frequent chemical applications: the use of exclusion netting and the use of perimeter applications of insecticides. RESULTS: Exclusion netting was installed across five vineyards in 2020 and compared to adjacent vines without exclusion netting. The netting reduced spotted lanternfly on vines by 99.8% and had no effect on air temperature, humidity, fungal disease pressure, or fruit quality. Perimeter applications of insecticides were compared against full-cover applications for both in-season and late-season control of spotted lanternfly in 2020. Residual efficacy with adult spotted lanternfly was evaluated within the vineyard plots, revealing that insecticide efficacy declined after 8 m into the vineyard in the perimeter application. However, there was no difference in the level of control achieved using a perimeter spray compared to a full-cover spray. Additionally, the perimeter spray reduced the area treated with insecticide by 31% in a 1 ha block and took 66% less time to spray. CONCLUSION: Both methods, exclusion netting and perimeter spraying, offer new strategies to alleviate the invasion of spotted lanternfly into vineyards, reducing chemical input and rebuilding IPM in vineyards after invasion by spotted lanternfly. © 2023 Society of Chemical Industry.

Prolonged phloem feeding by the spotted lanternfly, an invasive planthopper, alters resource allocation and inhibits gas exchange in grapevines.

Spotted lanternfly (Lycorma delicatula White; SLF) is a phloem-feeding planthopper invasive to the Eastern United States that can feed on a range of wild and cultivated plant species. Since its 2014 introduction in the United States, large infestations and subsequent economic damage have been reported in cultivated grapevines, but no studies have detailed grapevine physiological responses to SLF phloem feeding. This study investigated grapevine-SLF interactions, detailing how different infestation densities affect leaf gas exchange and end-season concentrations of nonstructural carbohydrates and nitrogen in vegetative and perennial tissues of two Vitis species. Effects on fruit ripeness parameters and dormant bud freeze tolerance were examined, in addition to other year-after effects. Phloem feeding by low densities (≤4 SLF shoot-1) had minimal effects, whereas greater densities (5-15 SLF shoot-1) increasingly affected carbohydrate and nitrogen dynamics in both Vitis species. Phloem feeding substantially affected starch and, to a lesser extent, total nitrogen concentrations of woody roots. Prolonged exposure strongly reduced leaf gas exchange. We conclude that intensive late-season phloem feeding by large adult SLF population densities (≥8 SLF shoot-1) can induce carbon limitation, with the potential for negative year-after effects in cases of severe belowground carbon depletion. This work presents novel insights into SLF-grapevine interactions, identifies avenues of future SLF-plant research, and assists the development of action thresholds for SLF management in vineyards.

Functionally-explicit sampling can answer key questions about the specificity of plant-microbe interactions.

The rhizosphere is a nexus for plant-microbe interactions and, as a host-structured environment, a location of high activity for distinct microbes and plant species. Although our insights into this habitat have exploded in recent years, we are still limited in our ability to answer key questions about the specificity of these root-microbial relationships. In particular, it can be difficult to confirm or reject microbiome heritability in many plant systems and to pinpoint which microbial taxa are key to plant functioning. Like other host-structured environments, the rhizosphere is structurally, chemically, and biologically complex, driven largely by differences in root anatomy, location, and function. In this Correspondence, we describe a review of 377 "rhizosphere microbiome" research papers and demonstrate how matching a sampling method to the biological question can advance our understanding of host-microbe interactions in a functionally heterogeneous environment. We found that the vast majority of studies (92%) pool all roots from a root system during sampling, ignoring variation in microbial composition between roots of different function and limiting insight into key root-microbial relationships. Furthermore, approaches for removing root-associated microbes are highly variable and non-standard, complicating multi-study analyses. Our understanding of the strength and nature of host-microbe relationships in heterogenous host-microbiome environments can be clarified by targeting sampling to locations of high interaction. While the high complexity of the rhizosphere creates logistical challenges, we suggest that unambiguous language and refined approaches will improve our ability to match methods to research questions and advance our understanding of the specificity of plant-microbial interactions.

Deciphering genome-wide transcriptomic changes in grapevines heavily infested by spotted lanternflies.

The spotted lanternfly, a newly invasive insect in the U.S. that is a great concern for the grapevine industry, produces damage on its host plants through aggressive feeding, using a piercing and sucking method to feed on the phloem of plants. In the eastern US, adult SLF can invade vineyards through fruit ripening until the end of the growing season; however, it is still unclear how prolonged late-season SLF feeding can affect the health of grapevines, as well as the host responses to this extensive damage. Thus, we have performed a comprehensive genome-wide transcriptome analysis in grapevines heavily infested by the spotted lanternfly, as it occurs in Pennsylvania vineyards, and compared it to other relevant transcriptomes in grapes with different degrees to susceptibility to similar pests. Among a variety of plant responses, we highlight here a subset of relevant biological pathways that distinguish or are common to the spotted lanternfly and other phloem feeders in grapevine. The molecular interaction between spotted lanternfly and the vine begins with activation of signal transduction cascades mediated mainly by protein kinase genes. It also induces the expression of transcription factors in the nucleus, of other signaling molecules like phytohormones and secondary metabolites, and their downstream target genes responsible for defense and physiological functions, such as detoxification and photosynthesis. Grapevine responses furthermore include the activation of genes for cell wall strengthening via biosynthesis of major structural components. With this study, we hope to provide the regulatory network to explain effects that the invasive spotted lanternfly has on grapevine health with the goal to improve its susceptibility.

Under-Vine Vegetation Mitigates the Impacts of Excessive Precipitation in Vineyards.

Excessive precipitation events have greatly increased in several grape growing regions due to human-caused climate change. These heavy downpours result in a myriad of problems in the vineyard including soil aggregate breakdown, soil runoff, nutrient leaching, excessive vine vegetative growth, and diseased fruit. The negative impacts of excessive precipitation events on vineyards are exacerbated by the maintenance of bare soil under the vines. Exposure of bare soil results in soil erosion and runoff which pollutes nearby watersheds; raindrops weaken and break apart soil aggregates, leading to increased soil erosivity and contributing to the formation of surface crusts. In addition to excessive precipitation events, some grape growing regions can be characterized by fertile soils. The availability of ample water and nutrients can lead to highly vigorous vines with shoot growth continuing through harvest. Long shoots and large leaves result in shaded fruit, a humid vine microclimate, and excessive cluster rot. In this review, we examined how either natural (i.e., resident) or seeded under-vine vegetation (UVV) can help mitigate many of the problems associated with excessive precipitation. Through providing vegetative coverage to reduce the force of raindrops, increasing soil organic matter and enhancing soil microbial diversity, UVV can reduce the soil degradation and off-site impacts caused by excessive precipitation events. Through competition for soil resources, UVV can reduce excessive vegetative growth of vines and decrease cluster rot incidence and severity, although grapevine response to UVV can be highly variable. We discussed recent advances in understanding below and aboveground vine response and acclimation to UVV and presented current evidence of factors influencing the impact of UVV on vine growth and productivity to assist practitioners in making informed decisions and maximize the ecosystem services provided by UVV.

The hierarchy of root branching order determines bacterial composition, microbial carrying capacity and microbial filtering.

Fine roots vary dramatically in their functions, which range from resource absorption to within-plant resource transport. These differences should alter resource availability to root-associated microorganisms, yet most root microbiome studies involve fine root homogenization. We hypothesized that microbial filtering would be greatest in the most distal roots. To test this, we sampled roots of six temperate tree species from a 23-year-old common garden planting, separating by branching order. Rhizoplane bacterial composition was characterized with 16S rRNA gene sequencing, while bacterial abundance was determined on a subset of trees through flow cytometry. Root order strongly impacted composition across tree species, with absorptive lower order roots exerting the greatest selective pressure. Microbial carrying capacity was higher in absorptive roots in two of three tested tree species. This study indicates lower order roots as the main point of microbial interaction with fine roots, suggesting that root homogenization could mask microbial recruitment signatures.

Influence of Region on Sensory and Chemical Profiles of Pennsylvania Grüner Veltliner Wines.

The influence of cultural and environmental factors on the sensory and chemical profiles of wines has been the subject of research investigation for many years, and an examination of these relationships can help determine whether wine regional trends exist. The present study investigated the chemical and sensory factors that drive regional differences in Pennsylvania Grüner Veltliner wines through a controlled winemaking study across two vintages in 2018 and 2019. Descriptive analysis was used to identify key sensory attributes of Pennsylvania Grüner Veltliner. Intensities of these attributes were evaluated in wines vinified under identical conditions from grapes harvested across nine Pennsylvania vineyards. Chemical profiles of finished wines were examined through volatile, phenolic, and color analyses. Significant sensory differences were found between wine regions, with some trends consistent across both vintages; however, regionality based on compositional analyses was less clear. As the first study to examine Pennsylvania Grüner Veltliner wines sensorially, results revealed sensory characteristics that can be useful for wineries and their tasting room staff in marketing these lesser-known white wines to wine consumers as the variety grows in popularity in the state.

Gibberellin Application Improved Bunch Rot Control of Vignoles Grape, but Response to Mechanical Defoliation Varied Between Training Systems.

Late-season bunch rot causes significant crop loss for grape growers in wet and humid climates. For 3 years (2016 to 2018), we integrated prebloom mechanized defoliation (MD) in the fruit zone and bloom gibberellin (GA) applications, either alone or in combination, into the bunch rot control program of Vignoles, a commercially valuable grape variety that is highly susceptible to bunch rot. We hypothesized that both treatments would decrease bunch rot through modification of cluster architecture or fruit zone microclimate compared with vines treated with the standard chemical control program. Grapevines were trained to two popular training systems, four-arm Kniffin (4AK) and high-wire bilateral cordon (HWC). Treatment responses varied between training systems. MD, alone or in combination with GA, reduced bunch rot incidence and severity every year on 4AK-trained vines, an effect attributed mainly to fruit zone improvements. Conversely, MD alone did not reduce bunch rot incidence on HWC-trained vines, despite significant improvements in cluster architecture (reduced number of berries per cluster and cluster compactness). GA applications were more effective than MD at reducing cluster compactness, regardless of training system. As a result, GA reduced bunch rot incidence and severity when applied alone or with MD on 4AK- and HWC-trained vines. All treatments positively improved fruit-soluble sugar concentration on both training systems, while positive effects on titratable acidity were more consistent across training systems with MD.

Modeling the Impacts of Weather and Cultural Factors on Rotundone Concentration in Cool-Climate Noiret Wine Grapes.

The sesquiterpenoid rotundone is the compound responsible for the "black pepper" aroma of many plant species, including several economically important wine grape varieties. Since its identification in wine in 2008, there has been an increased interest in understanding how individual climatic or cultural factors affect the accumulation of rotundone in grapes and subsequently the level of wine "pepperiness." However, no study has assessed climatic and viticultural factors together to identify which variables have the strongest influence on rotundone accumulation. Our study aimed to fill this knowledge gap by developing a predictive model that identified factors that explain rotundone concentrations in Noiret (Vitis sp.) grapes at harvest. Over the 2016 and 2017 seasons, we measured 21 viticultural, meso- and microclimatic variables and concentrations of rotundone in Noiret wine grapes at seven vineyards in the northeastern U.S. Vineyard growing degree days (GDD v ) and the amount of solar radiation (cumulative solar exposure; CSEv) accumulated from the beginning of fruit ripening to harvest were the variables best correlated (r = 0.70 and r = 0.74, respectively) with rotundone concentrations. Linear correlations between microclimatic parameters and rotundone concentrations were weaker, but overall rotundone was negatively correlated with low (<15°C) and high (>30°C) berry temperatures. Using the 2-year data set we were able to develop a four-variable model which explained more than 80% of the variation in rotundone concentration at harvest. The model included weather [growing degree days during fruit ripening (GDD v )] and plant-related variables (concentrations of phosphorus and calcium in the leaf petiole, and crop load). The model we developed could be used by wine producers to identify sites or cultural practices that favor rotundone accumulation in Noiret grapes after performing a model validation with an additional, external data set. More broadly, the statistical approach used here could be applied to other studies that also seek to assess the effects of multiple factors on a variable of interest under varying environmental conditions.

Young grapevines exhibit interspecific differences in hydraulic response to freeze stress but not in recovery.

MAIN CONCLUSIONS: This study demonstrated that freeze-induced hydraulic failure varies between two Vitis species that have different xylem vessel frequency and grouping. However, seasonal recovery of young grapevines was similar between the species. Sub-freezing temperatures after budburst represent a major threat for the cultivation of fruit crops in temperate regions. Freeze stress might disrupt xylem hydraulic functionality and plant growth; however, it is unclear if hydraulic traits influence the ability of woody plants to cope with freeze stress. We investigated if a grapevine species (Vitis hybrid) with earlier budburst had anatomical traits that cause higher freeze-induced hydraulic failure but also confer a greater ability for seasonal recovery compared to a Vitis vinifera species. Two-year-old Vitis hybrid and vinifera grapevines were container-grown outdoors, assigned to either a control (n = 40) or a freeze-stressed (n = 40) treatment and exposed to a controlled-temperature (- 4 °C) freeze stress shortly after budburst. We found that the Vitis hybrid had greater stem-specific hydraulic conductivity (Ks) and was more vulnerable to freeze-induced embolism compared to the V. vinifera species, which exhibited a less efficient but safer water transport strategy. Seventy-two hours after the freeze stress, Ks of freeze-stressed V. vinifera was 77.8% higher than that of the control, indicating hydraulic recovery. While the two species did not differ in xylem vessel diameter, Vitis hybrid exhibited higher vessel frequency and percentage of vessel grouping, which could explain its higher Ks and greater freeze-induced Ks loss compared to the V. vinifera vines. While the two species varied in the short-term hydraulic response, they exhibited similar and full hydraulic and vegetative recovery by midseason, including bud freeze tolerance during the following fall and mid-winter.

Shifts in xylem vessel diameter and embolisms in grafted apple trees of differing rootstock growth potential in response to drought.

We investigated responses of plant growth rate, hydraulic resistance, and xylem cavitation in scion-rootstock-combinations of Malus domestica L. cv. Honeycrisp scions grafted onto a high-shoot vigor (HSV) rootstock, (semi-dwarfing Malling111), or onto a low-shoot vigor (LSV) rootstock, (dwarfing Budagovsky 9), in response to substrate moisture limitation. Adjustments in xylem vessel diameter and frequency were related to hydraulic resistance measurements for high- versus low- vigor apple trees. We observed a greater tolerance to water deficit in the high-shoot compared to the low-shoot vigor plants under water deficit as evidenced by increased growth in several plant organs, and greater scion anatomical response to limited water availability with ca. 25% increased vessel frequency and ca. 28% narrower current season xylem ring width. Whereas water limitation resulted in greater graft union hydraulic resistance of high-shoot vigor trees, the opposite was true when water was not limiting. The graft union of the low-shoot vigor rootstock exhibited higher hydraulic resistance under well-watered conditions. Scions of high-shoot vigor rootstocks had fewer embolisms at low plant water status compared to scions of low-shoot vigor rootstocks, presumably as a result of large differences in xylem vessel diameter. Our results demonstrated that anatomical differences were related to shifts in hydraulic conductivity and cavitation events, a direct result of grafting, under limited soil water.