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1.
Biochem Soc Trans ; 33(Pt 1): 137-40, 2005 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-15667286

RESUMEN

The recent structural characterization of the NrfA from Escherichia coli provides a framework to rationalize the spectroscopic and functional properties of this enzyme. Analyses by EPR and magnetic CD spectroscopies have been complemented by protein-film voltammetry and these are discussed in relation to the essential structural features of the enzyme.


Asunto(s)
Citocromos a1/química , Citocromos c1/química , Escherichia coli/enzimología , Nitrato Reductasas/química , Dicroismo Circular , Espectroscopía de Resonancia por Spin del Electrón , Modelos Moleculares , Conformación Proteica
2.
Biochemistry ; 40(35): 10562-9, 2001 Sep 04.
Artículo en Inglés | MEDLINE | ID: mdl-11523998

RESUMEN

The SoxAX complex of the bacterium Rhodovulum sulfidophilum is a heterodimeric c-type cytochrome that plays an essential role in photosynthetic thiosulfate and sulfide oxidation. The three heme sites of SoxAX have been analyzed using electronic absorption, electron paramagnetic resonance, and magnetic circular dichroism spectroscopies. Heme-3 in the ferric state is characterized by a Large g(max) EPR signal and has histidine and methionine axial heme iron ligands which are retained on reduction to the ferrous state. Hemes-1 and -2 both have thiolate plus nitrogenous ligand sets in the ferric state and give rise to rhombic EPR spectra. Heme-1, whose ligands derive from cysteinate and histidine residues, remains ferric in the presence of dithionite ion. Ferric heme-2 exists with a preparation-dependent mixture of two different ligand sets, one being cysteinate/histidine, the other an unidentified pair with a weaker crystal-field strength. Upon reduction of the SoxAX complex with dithionite, a change occurs in the ligands of heme-2 in which the thiolate is either protonated or replaced by an unidentified ligand. Sequence analysis places the histidine/methionine-coordinated heme in SoxX and the thiolate-liganded hemes in SoxA. SoxAX is the first naturally occurring c-type cytochrome in which a thiolate-coordinated heme has been identified.


Asunto(s)
Alphaproteobacteria/metabolismo , Proteínas Bacterianas , Grupo Citocromo c/metabolismo , Hemo/metabolismo , Tiosulfatos/metabolismo , Absorción , Dicroismo Circular , Espectroscopía de Resonancia por Spin del Electrón , Oxidación-Reducción
3.
FEBS Lett ; 500(1-2): 71-4, 2001 Jun 29.
Artículo en Inglés | MEDLINE | ID: mdl-11434929

RESUMEN

The periplasmic nitrate reductase (NAP) from Paracoccus pantotrophus is a soluble two-subunit enzyme (NapAB) that binds two c-type haems, a [4Fe-4S] cluster and a bis-molybdopterin guanine dinucleotide cofactor that catalyses the reduction of nitrate to nitrite. In the present work the NapAB complex has been studied by magneto-optical spectroscopy to probe co-ordination of both the NapB haems and the NapA active site Mo. The absorption spectrum of the NapAB complex is dominated by features from the NapB c-type cytochromes. Using a combination of electron paramagnetic resonance spectroscopy and magnetic circular dichroism it was demonstrated that both haems are low-spin with bis-histidine axial ligation. In addition, a window between 600 and 800 nm was identified in which weak absorption features that may arise from Mo could be detected. The low-temperature MCD spectrum shows oppositely signed bands in this region (peak 648 nm, trough 714 nm) which have been assigned to S-to-Mo(V) charge transfer transitions.


Asunto(s)
Molibdeno/química , Nitrato Reductasas/química , Paracoccus/enzimología , Secuencia de Aminoácidos , Dicroismo Circular , Espectroscopía de Resonancia por Spin del Electrón , Hemo/química , Datos de Secuencia Molecular , Nitrato-Reductasa , Paracoccus/química , Homología de Secuencia de Aminoácido
4.
Biochem Biophys Res Commun ; 279(2): 674-7, 2000 Dec 20.
Artículo en Inglés | MEDLINE | ID: mdl-11118344

RESUMEN

Paracoccus pantotrophus cytochrome cd(1) is a physiological nitrite reductase and an in vitro hydroxylamine reductase. The oxidised "as isolated" form of the enzyme has bis-histidinyl coordinated c-heme and upon reduction its coordination changes to histidine/methionine. Following treatment of reduced enzyme with hydroxylamine, a novel, oxidised, conformer of the enzyme is obtained. We have devised protocols for freeze-quench near-ir-MCD spectroscopy that have allowed us to establish unequivocally the c-heme coordination of this species as His/Met. Thus it is shown that the catalytically competent, hydroxylamine reoxidised, form of P. pantotrophus cytochrome cd(1) has different axial ligands to the c-heme than "as isolated" enzyme.


Asunto(s)
Citocromos/química , Citocromos/metabolismo , Nitrito Reductasas/química , Nitrito Reductasas/metabolismo , Paracoccus/enzimología , Grupo Citocromo c , Espectroscopía de Resonancia por Spin del Electrón/métodos , Congelación , Oxidación-Reducción , Conformación Proteica , Espectrofotometría Infrarroja/métodos
5.
J Biol Inorg Chem ; 5(5): 584-92, 2000 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-11085649

RESUMEN

Substitution by cysteine of one of the heme iron axial ligands (His66) of flavocytochrome b2 (L-lactate:cytochrome c oxidoreductase from Saccharomyces cerevisiae) has resulted in an enzyme (H66C-b2) which remains a competent L-lactate dehydrogenase (kcat 272+/-6 s(-1), L-lactate KM 0.60+/-0.06 mM, 25 degrees C, I 0.10, Tris-HCl, pH 7.5) but which has no cytochrome c reductase activity. As a result of the mutation, the reduction potential of the heme was found to be -265+5 mV, over 240 mV more negative than that of the wild-type enzyme, and therefore unable to be reduced by L-lactate. Surface-enhanced resonance Raman spectroscopy indicates similarities between the heme of H66C-b2 and those of cytochromes P450, with a nu4 band at 1,345 cm(-1) which is indicative of cysteine heme-iron ligation. In addition, EPR spectroscopy yields g-values at 2.33, 2.22 and 1.94, typical of low-spin ferric cytochromes P450, optical spectra show features between 600 and 900 nm which are characteristic of sulfur coordination of the heme iron, and MCD spectroscopy shows a blue-shifted NIR CT band relative to the wild-type, implying that the H66C-b2 heme is P450-like. Interestingly, EPR evidence also suggests that the second histidine heme-iron ligand (His43) is displaced in the mutant enzyme.


Asunto(s)
Sustitución de Aminoácidos/genética , Hemo/metabolismo , Histidina/metabolismo , L-Lactato Deshidrogenasa/química , L-Lactato Deshidrogenasa/metabolismo , Saccharomyces cerevisiae/enzimología , Dicroismo Circular , Cisteína/genética , Cisteína/metabolismo , Espectroscopía de Resonancia por Spin del Electrón , Mononucleótido de Flavina/metabolismo , Histidina/genética , Cinética , L-Lactato Deshidrogenasa/genética , L-Lactato Deshidrogenasa (Citocromo) , Mutación/genética , Oxidación-Reducción , Unión Proteica , Saccharomyces cerevisiae/genética , Espectrofotometría , Espectrometría Raman
6.
J Biol Chem ; 275(12): 8515-22, 2000 Mar 24.
Artículo en Inglés | MEDLINE | ID: mdl-10722689

RESUMEN

Two membranous c-type cytochromes from the Fe(III)-respiring bacterium Shewanella frigidimarina NCIMB400, CymA and OmcA, have been purified and characterized by UV-visible, magnetic circular dichroism, and electron paramagnetic resonance spectroscopies. The 20-kDa CymA is a member of the NapC/NirT family of multiheme cytochromes, which are invariably anchored to the cytoplasmic membrane of Gram-negative bacteria, and are postulated to mediate electron flow between quinols and periplasmic redox proteins. CymA was found to contain four low-spin c-hemes, each with bis-His axial ligation, and midpoint reduction potentials of +10, -108, -136, and -229 mV. The 85-kDa OmcA is located at the outer membrane of S. frigidimarina NCIMB400, and as such might function as a terminal reductase via interaction with insoluble Fe(III) substrates. This putative role is supported by the finding that the protein was released into solution upon incubation of harvested intact cells at 25 degrees C, suggesting an attachment to the exterior face of the outer membrane. OmcA was revealed by magneto-optical spectrocopies to contain 10 low-spin bis-His ligated c-hemes, with the redox titer indicating two sets of near iso-potential components centered at -243 and -324 mV.


Asunto(s)
Proteínas Bacterianas , Grupo Citocromo c/química , Proteínas de la Membrana/química , Shewanella/química , Proteínas de la Membrana Bacteriana Externa , Compartimento Celular , Fraccionamiento Celular , Dicroismo Circular , Espectroscopía de Resonancia por Spin del Electrón , Hemo/química , Magnetismo , Oxidación-Reducción , Potenciometría , Análisis de Secuencia de Proteína , Espectrofotometría
7.
Biochemistry ; 38(42): 13780-6, 1999 Oct 19.
Artículo en Inglés | MEDLINE | ID: mdl-10529222

RESUMEN

Bacterial nitric oxide reductase (NOR) catalyzes the two-electron reduction of nitric oxide to nitrous oxide. It is a highly diverged member of the superfamily of heme-copper oxidases. The main feature by which NOR is distinguished from the heme-copper oxidases is the elemental composition of the active site, a dinuclear center comprised of heme b(3) and non-heme iron (Fe(B)). The visible region electronic absorption spectrum of reduced NOR exhibits a maximum at 551 nm with a distinct shoulder at 560 nm; these are attributed to Fe(II) heme c (E(m) = 310 mV) and Fe(II) heme b (E(m) = 345 mV), respectively. The electronic absorption spectrum of oxidized NOR exhibits a characteristic shoulder around 595 nm that exhibits complex behavior in equilibrium redox titrations. The first phase of reduction is characterized by an apparent shift of the shoulder to 604 nm and a decrease in intensity. This is due to reduction of Fe(B) (E(m) = 320 mV), while the subsequent bleaching of the 604 nm band represents reduction of heme b(3) (E(m) = 60 mV). This separation of redox potentials (>200 mV) allows the enzyme to be poised in the three-electron reduced state for detailed spectroscopic examination of the Fe(III) heme b(3) center. The low midpoint potential of heme b(3) represents a thermodynamic barrier to the complete (two-electron) reduction of the dinuclear center. This may avoid formation of a stable Fe(II) heme b(3)-NO species during turnover, which may be an inhibited state of the enzyme. It would also appear that the evolution of significant oxygen reducing activity by heme-copper oxidases was not simply a matter of the substitution of copper for non-heme iron in the dinuclear center. Changes in the protein environment that modulate the midpoint redox potential of heme b(3) to facilitate both complete reduction of the dinuclear center (a prerequisite for oxygen binding) and rapid heme-heme electron transfer were also necessary.


Asunto(s)
Cobre/química , Hemo/química , Oxidorreductasas/química , Dicroismo Circular , Cobre/metabolismo , Grupo Citocromo b/química , Grupo Citocromo c/química , Espectroscopía de Resonancia por Spin del Electrón , Transporte de Electrón , Hemo/metabolismo , Oxidación-Reducción , Oxidorreductasas/metabolismo , Paracoccus denitrificans/enzimología , Potenciometría , Espectrofotometría
9.
J Biol Chem ; 273(44): 28785-90, 1998 Oct 30.
Artículo en Inglés | MEDLINE | ID: mdl-9786877

RESUMEN

NapC is a member of a family of bacterial membrane-anchored tetra-heme c-type cytochromes that participate in a number of respiratory electron transport pathways. They are postulated to mediate electron transfer between membrane quinols/quinones and soluble periplasmic enzymes. The water-soluble heme domain of NapC has been expressed as a periplasmic protein. Mediated redox potentiometry and characterization by UV-visible, magnetic circular dichroism, and electron paramagnetic resonance spectroscopies demonstrates that soluble NapC contains four low spin hemes, each with bis-histidine axial ligation and with midpoint reduction potentials of -56, -181, -207, and -235 mV.


Asunto(s)
Bacterias/enzimología , Grupo Citocromo c/química , Secuencia de Aminoácidos , Secuencia de Bases , Grupo Citocromo c/metabolismo , Cartilla de ADN , Transporte de Electrón , Datos de Secuencia Molecular , Potenciometría , Homología de Secuencia de Aminoácido , Análisis Espectral
10.
J Bioenerg Biomembr ; 30(1): 55-62, 1998 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-9623806

RESUMEN

For the study of the dinuclear center of heme-copper oxidases cytochrome bo3 from Escherichia coli offers several advantages over the extensively characterized bovine cytochrome c oxidase. The availability of strains with enhanced levels of expression allows purification of the significant amounts of enzyme required for detailed spectroscopic studies. Cytochrome bo3 is readily prepared as the fast form, with a homogeneous dinuclear center which gives rise to characteristic broad EPR signals not seen in CcO. The absence of CuA and the incorporation of protohemes allows for a detailed interpretation of the MCD spectra arising from the dinuclear center heme o3. Careful analysis allows us to distinguish between small molecules that bind to heme o3, those which are ligands of CuB, and those which react to yield higher oxidation states of heme o3. Here we review results from our studies of the reactions of fast cytochrome bo3 with formate, fluoride, chloride, azide, cyanide, NO, and H2O2.


Asunto(s)
Citocromos/química , Escherichia coli/química , Animales , Bovinos , Grupo Citocromo b , Proteínas de Escherichia coli , Oxidación-Reducción , Análisis Espectral
11.
Biochemistry ; 37(11): 3994-4000, 1998 Mar 17.
Artículo en Inglés | MEDLINE | ID: mdl-9521721

RESUMEN

EPR spectra at liquid helium temperatures and MCD spectra at room temperature and 4.2 K are presented for fully oxidized nitric oxide reductase (NOR) from Pseudomonas stutzeri. The MCD spectra show that the enzyme contains three heme groups at equivalent concentrations but distinctive in their axial coordination. Two, in the low-spin ferric state at all temperatures, give rise to infrared charge-transfer transitions which show the hemes to have bis-histidine and histidine-methionine ligation, respectively. The EPR spectra show them to be magnetically isolated. The third heme has an unusual temperature-dependent spin state and spectroscopic features which are consistent with histidine-hydroxide coordination. No EPR signals have been detected from this heme. Together with its unusual near-infrared MCD, this suggests a spin-spin interaction between this heme and another paramagnet. The three hemes account for only 75% of the iron content, and it is concluded that the additional paramagnet is a mononuclear ferric ion. These results provide further evidence that NOR is indeed structurally related to heme-copper oxidases and that it contains a heme/non-heme iron spin-coupled pair at the active site.


Asunto(s)
Cobre/química , Hemo/química , Oxidorreductasas/química , Pseudomonas/enzimología , Sitios de Unión , Dicroismo Circular , Frío , Grupo Citocromo b , Citocromos/química , Espectroscopía de Resonancia por Spin del Electrón , Transporte de Electrón , Proteínas de Escherichia coli , Oxidación-Reducción , Temperatura
13.
Biochemistry ; 36(51): 16267-76, 1997 Dec 23.
Artículo en Inglés | MEDLINE | ID: mdl-9405061

RESUMEN

It is shown that, in the oxidized state, heme c of Pseudomonas stutzeri (ZoBell strain) cytochrome cd1 has histidine-methionine ligation as observed for cytochrome cd1 from Pseudomonas aeruginosa [Sutherland, J., Greenwood, C., Peterson, J., and Thomson, A. J. (1986) Biochem. J. 233, 893-898]. However, the X-ray structure of Thiosphaera pantotropha cytochrome cd1 reveals bis-histidine ligation for heme c. It is confirmed by EPR and near-infrared (NIR) MCD measurements that the bis-histidine coordination remains unaltered in the solution phase. Hence, the difference between the heme c ligation states defines two distinct classes of oxidized cytochromes cd1 as isolated. A weak feature in the T. pantotropha NIR MCD at 1900 nm suggests that a small population of heme c has histidine-methionine coordination. The ligation state of heme d1 cannot be defined with the same level of confidence, because the porphyrin-to-Fe(III) charge-transfer (CT) bands are less well characterized for this class of partially reduced porphyrin ring. However, variable temperature absorption and MCD spectra show that, in the T. pantotropha enzyme, heme d1 exists in a thermal low-spin/high-spin mixture with the low-spin as the ground state, whereas in P. stutzeri cytochrome cd1, and d1 heme is low-spin at all temperatures. A weak band, assigned as the heme d1 porphyrin-pi(a1u,a2u)-to-ferric(d) charge-transfer transition has been identified for the first time at 2170 nm. Its magnetic properties show the heme d1 to have an unusual (dxz,yz)4(dxy)1 electronic ground state as is found for low-spin Fe(III) chlorins [Cheesman, M. R., and Walker, F. A. (1996) J. Am. Chem. Soc. 118, 7373-7380]. It is proposed that the localization of the Fe(III) unpaired d-electron in an orbital lying in the heme plane may decrease the affinity of the Fe(III) heme for unsaturated ligands such as NO. Although heme d1 in the enzymes from P. stutzeri and T. pantotropha shows different temperature-dependent spin properties, the positions of the low-spin Fe(III) alpha-absorption band, at approximately 640 nm, are very similar to those observed for cytochromes cd1 from eight other sources, suggesting that all have similar strength fields from the axial ligands and, hence, that all have the same coordination, namely histidine-tyrosine or possibly histidine-hydroxide at the heme.


Asunto(s)
Citocromos/química , Bacterias Gramnegativas Quimiolitotróficas/enzimología , Hemo/análogos & derivados , Nitrito Reductasas/química , Pseudomonas/enzimología , Secuencia de Aminoácidos , Proteínas Bacterianas/química , Proteínas Bacterianas/metabolismo , Dicroismo Circular , Cristalografía por Rayos X , Grupo Citocromo c , Citocromos/metabolismo , Espectroscopía de Resonancia por Spin del Electrón , Hemo/química , Hierro/química , Datos de Secuencia Molecular , Nitrito Reductasas/metabolismo , Alineación de Secuencia , Espectrofotometría
14.
Biochemistry ; 35(42): 13618-26, 1996 Oct 22.
Artículo en Inglés | MEDLINE | ID: mdl-8885841

RESUMEN

We have generated mutants of cytochrome b562 in which the histidine ligand to the heme iron (His102) has been replaced by a methionine. The resulting proteins can have bis-methionine coordination to the heme iron, but the stability of this arrangement is dependent on oxidation state and solution pH. We have used optical, MCD, and EPR spectroscopies to study the nature of the heme coordination environment under a variety of conditions. Optical spectra of the reduced state of the single variant, H102M, are consistent with bis-methionine ligation. In its oxidized state, this protein is high-spin under all conditions studied, and the spectroscopic properties are consistent with only one of the methionine ligands being coordinated. We cannot identify what, if anything, provides the other axial ligand. A double variant, R98C/H102M (in which the heme is covalently attached to the protein through a c-type thioether linkage), is also bis-methionine coordinated in the ferrous state, but has significantly different properties in the oxidized state. With a pKa of 7.1 at 20 degrees C, the protein converts from a low-spin, 6-coordinate heme protein at low pH, to a high-spin species, similar to the high-spin species observed for the single variant. Our spectroscopic data prove that the low-spin species is bis-methionine coordinated. The reduction potential of this bis-methionine species has been measured using direct electrochemical techniques and is +440 mV at pH 4.8. The electrochemistry of these proteins is complicated by coupled coordination-state changes. Proof that the ferrous state is bis-methionine coordinated is provided by NMR results presented in the following paper.


Asunto(s)
Proteínas Bacterianas , Grupo Citocromo b/química , Grupo Citocromo b/metabolismo , Proteínas de Escherichia coli , Escherichia coli/química , Hemo/metabolismo , Hierro/metabolismo , Metionina/metabolismo , Dicroismo Circular , Clonación Molecular , Grupo Citocromo b/genética , Electroquímica , Espectroscopía de Resonancia por Spin del Electrón , Transporte de Electrón , Escherichia coli/genética , Ferritinas/química , Concentración de Iones de Hidrógeno , Ligandos , Mutagénesis Sitio-Dirigida , Oxidación-Reducción , Proteínas Recombinantes/química , Proteínas Recombinantes/metabolismo , Espectrofotometría
15.
Biochemistry ; 35(43): 13780-7, 1996 Oct 29.
Artículo en Inglés | MEDLINE | ID: mdl-8901520

RESUMEN

Azide binds to fast cytochrome bo with a stoichiometry of 1:1, the dissociation constant for this reaction being approximately 2 x 10(-5) M. The changes induced in the electronic absorption are very slight and are consistent with heme o remaining hexacoordinate high-spin, an observation confirmed by room temperature MCD spectroscopy in the region 350-2000 nm. X-band EPR spectroscopy of the azide-bound form shows heme o remains coupled to CuB, but that the integer spin signal (g = 3.7) that we have previously reported to be associated with the binuclear center of fast cytochrome bo [Watmough et al. (1993) FEBS Lett. 319, 151-154], is shifted to higher field. The kinetics of azide binding are an order of magnitude faster than those observed for the binding of cyanide. Unlike cyanide, the observed rate constants do not saturate in the range 0.05-25 mM. The value of Kon shows a marked dependence on pH, indicating that the active species is hydrazoic acid. It is argued that these data are consistent with the binding of azide ion as a terminal ligand to CuB yielding a binuclear center in the form FeIII-OH2:: CuBII-N3. The binding of azide in heme-copper oxidases may cause displacement of another nitrogenous ligand from CuB which might explain the absence of electron density associated with histidine-325 in the structure of the Paracoccus denitrificans CCO [Iwata et al. (1995) Nature 376, 660-669]. Formate appears to act as a bidentate ligand to the binuclear center-, blocking not only the binding of azide to CuB but also the binding of cyanide to heme o.


Asunto(s)
Grupo Citocromo b , Citocromos/metabolismo , Proteínas de Escherichia coli , Escherichia coli/química , Dicroismo Circular , Cobre/metabolismo , Espectroscopía de Resonancia por Spin del Electrón , Formiatos/farmacología , Hemo/metabolismo , Hemoproteínas/química , Hemoproteínas/metabolismo , Concentración de Iones de Hidrógeno , Cinética , Unión Proteica , Espectrofotometría
16.
Biochemistry ; 34(42): 13895-905, 1995 Oct 24.
Artículo en Inglés | MEDLINE | ID: mdl-7577984

RESUMEN

Electronic absorption, MCD, and 1H NMR spectroscopy have been used to characterize the structures and linkage relationships of three active site states, LS1, HS, and LS2, of the Trp51Ala variant of yeast cytochrome c peroxidase (CcP) in the Fe(III) state. In addition, the binding of three substrates (styrene, catechol, and guaiacol) to the Fe(III) variant has been studied by 1H NMR spectroscopy, and the paramagnetically shifted resonances of the cyanide adduct of the variant have been assigned. The heme iron is hexacoordinated in all three pH-dependent states of the enzyme. LS1, the dominant acidic species, exhibits electronic and MCD spectra indicative of low-spin, bis-histidine coordination environment for the heme iron. The HS form, which dominates at intermediate pH, exhibits electronic, MCD, and 1H NMR spectra characteristic of high-spin heme Fe(III) with axial histidyl and water ligands. The LS2 species exhibits spectroscopic properties indicative of a bis-histidine, low-spin Fe(III) derivative. The equilibrium constants for interconversion of these forms of the variant enzyme are highly dependent on ionic strength, specific anions, and temperature of the solution, with the HS form stabilized relative to the other forms in the presence of several noncoordinating, anionic species. Aromatic substrates such as styrene, catechol, and guaiacol affect the chemical shifts of the heme substituents of the HS species but not of the LS2 species. Based on these results, a model is proposed that accounts to a large extent for the electrostatic origin of the three forms of the active site of the Trp51Ala variant and the mechanisms by which they are differentially stabilized in solution.


Asunto(s)
Citocromo-c Peroxidasa/química , Saccharomyces cerevisiae/enzimología , Aniones/metabolismo , Sitios de Unión , Catecoles/metabolismo , Dicroismo Circular , Cianuros/metabolismo , Citocromo-c Peroxidasa/genética , Citocromo-c Peroxidasa/metabolismo , Electrólitos/farmacología , Compuestos Férricos/metabolismo , Guayacol/metabolismo , Hemo/química , Enlace de Hidrógeno , Concentración de Iones de Hidrógeno , Espectroscopía de Resonancia Magnética , Estructura Molecular , Mutagénesis Sitio-Dirigida/genética , Espectrofotometría , Estireno , Estirenos/metabolismo
17.
Biochem J ; 308 ( Pt 2): 641-4, 1995 Jun 01.
Artículo en Inglés | MEDLINE | ID: mdl-7772053

RESUMEN

The cytochrome bd ubiquinol oxidase from Escherichia coli is induced when the bacteria are cultured under microaerophilic or low-aeration conditions. This membrane-bound respiratory oxidase catalyses the two-electron oxidation of ubiquinol and the four-electron reduction of dioxygen to water. The oxidase contains three haem prosthetic groups: haem b558, haem b595 and haem d. Haem d is the oxygen binding site, and it is likely that haem d and b595 form a bimetallic site in the enzyme. Haem b558 has been previously characterized spectroscopically as being low spin and has been shown to be located within subunit I (CydA) of this two-subunit enzyme. It is likely that haem b558 is associated with the quinol oxidation site, which has also been shown to be within subunit I. In a previous effort to locate the specific amino acids axially ligated to haem b558, all six histidines within subunit I were altered by site-directed mutagenesis. Only one, histidine-186, was identified as a likely ligand to haem b558. Hence it was suggested that haem b558 could not have bis(histidine) ligation. In the current work, a combination of low-temperature near-infrared magnetic circular dichroism (NIR-MCD) and EPR spectroscopies have been employed to identify the nature of the haem b558 axial ligands. The NIR-MCD spectrum at cryogenic temperatures is dominated by the low-spin haem b558 component of the complex, and the low-energy band near 1800 nm is strong evidence for histidine-methionine ligation. It is concluded that haem b558 is ligated to histidine-186 plus one of the methionines located within subunit I of the oxidase.


Asunto(s)
Grupo Citocromo b/química , Citocromos/química , Proteínas del Complejo de Cadena de Transporte de Electrón , Proteínas de Escherichia coli , Escherichia coli/enzimología , Hemo/química , NADPH Oxidasas , Oxidorreductasas/química , Proteínas Bacterianas/química , Dicroismo Circular , Espectroscopía de Resonancia por Spin del Electrón , Histidina/química , Metionina/química , Espectrofotometría Ultravioleta
18.
Biochemistry ; 34(18): 6153-8, 1995 May 09.
Artículo en Inglés | MEDLINE | ID: mdl-7742319

RESUMEN

Electron paramagnetic resonance (EPR) and magnetic circular dichroism (MCD) spectroscopic studies were carried out on the tetraheme flavocytochrome c from Shewanella putrefaciens NCIMB400. The EPR spectrum reveals two sets of g-values--gz = 2.93, gy = 2.28, and gx = 1.51; and gz = 3.58--and the MCD spectrum shows a charge-transfer band at 1510 nm. These data combined show that all four hemes are low spin and have a nitrogenous sixth ligand. Sequence comparisons with other tetraheme cytochromes, particularly that from the purple phototroph H-1-R [Ambler, R.P. (1991) Biochem. Biophys. Acta 1058, 42-47], indicate that the sixth ligands are all histidines. Both the EPR data and the previously reported heme midpoint potentials [-220 and -320 mV; Morris, C.J., Black, A.C., Pealing, S.L., Manson, F.D.C., Chapman, S.K., Reid, G.A., Gibson, D.M., & Ward, F.B. (1994) Biochem. J. 302, 587-593] indicate that the hemes fall into two pairs. Stopped-flow kinetic experiments showed that fumarate-dependent heme oxidation was biphasic (kcat[fast] = 400 +/- 20 s-1; kcat[slow] = 34 +/- 3 s-1), with each phase having the same amplitude, confirming that the hemes are functionally paired.


Asunto(s)
Grupo Citocromo c/química , Bacilos Gramnegativos Anaerobios Facultativos/enzimología , Succinato Deshidrogenasa/química , Secuencia de Aminoácidos , Dicroismo Circular , Espectroscopía de Resonancia por Spin del Electrón , Datos de Secuencia Molecular , Alineación de Secuencia
19.
Biochem J ; 300 ( Pt 2): 469-75, 1994 Jun 01.
Artículo en Inglés | MEDLINE | ID: mdl-8002953

RESUMEN

Oxidized cytochrome bo reacts rapidly with micromolar concentrations of H2O2 to form a single derivative. The electronic absorption spectrum of this compound differs from that of the oxidized form of the enzyme reported by this laboratory [Watmough, Cheesman, Gennis, Greenwood and Thomson (1993) FEBS Lett. 319, 151-154]. It is characterized by a Soret maximum at 411 nm, increased absorbance at 555 nm, and reduced intensity at 624 nm. The apparent dissociation constant for this process is of the order of 4 x 10(-6) M, and the bimolecular rate constant for the formation of the new compound is (1.25-1.7) x 10(3) M-1.s-1. Electronic absorption difference spectroscopy shows this product to be identical with the compound formed from the reaction of the mixed-valence form of the enzyme with dioxygen. Investigation of this compound by room-temperature magnetic c.d. spectroscopy shows haem o to be neither high-spin nor low-spin ferric, but to have a spectrum characteristic of an oxyferryl species. There is no evidence for oxidation of the porphyrin ring. Therefore the binuclear centre of this species must consist of an oxyferryl haem (S = 1) coupled to a Cu(II) ion (S = 1/2) to form a new paramagnetic centre. The reaction was also followed by X-band e.p.r. spectroscopy, and this showed the disappearance in parallel with the formation of the oxyferryl species, of the broad g = 3.7, signal which arises from the weakly coupled binuclear centre in the oxidized enzyme. Since no new e.p.r.-detectable paramagnetic species were observed, the Cu(II) ion is presumed to be coupled to another paramagnet, possibly an organic radical. There is no evidence in the electronic absorption spectrum to indicate further reaction of cytochrome bo with H2O2 to form a second species. We argue that the circumstances of formation of this oxyferryl species are the same as those for the P form of cytochrome c oxidase, a species often regarded as containing a bound peroxide ion. The implications of these observations for the reaction mechanism of haem-copper terminal oxidases are discussed.


Asunto(s)
Grupo Citocromo b , Citocromos/metabolismo , Proteínas de Escherichia coli , Escherichia coli/enzimología , Peróxido de Hidrógeno/metabolismo , Dicroismo Circular , Espectroscopía de Resonancia por Spin del Electrón , Cinética , Oxidación-Reducción , Oxígeno/metabolismo , Temperatura
20.
Eur J Biochem ; 219(1-2): 595-602, 1994 Jan 15.
Artículo en Inglés | MEDLINE | ID: mdl-8307024

RESUMEN

Room-temperature (295 K) magnetic-circular-dichroism spectra at 280-2500 nm have been recorded for Escherichia coli cytochrome bo in its fast form (which has a g = 3.7 EPR signal and reacts rapidly with cyanide) and for its formate, fluoride, cyanide and hydrogen-peroxide derivatives. The spectra of all forms are dominated by signals from low-spin ferric heme b. These include a porphyrin-to-ferric ion charge-transfer transition in the near-infrared region (the near-infrared charge-transfer band) at 1610 nm. High-spin ferric heme o gives rise to a negative magnetic-circular-dichroism feature at 635, 642 and 625 nm (corresponding to a shoulder observed in the electronic absorption spectra) and a derivative charge-transfer feature at 1100, 1180 and 940 nm for the fast, formate and fluoride forms, respectively. The energies of these bands confirm that fluoride and formate are ligands to heme o. The energies of the analogous bands in the spectrum of fast cytochrome bo are typical for high-spin ferric hemes with histidine and water axial ligands. Addition of cyanide ion to fast cytochrome bo causes a red shift in the position of the Soret absorption peak, from 406.5 nm to 413 nm, and results in the loss of the 635-nm feature from the magnetic-circular-dichroism spectrum and of the corresponding shoulder in the electronic absorption spectrum. In the magnetic-circular-dichroism spectrum, the intensities of the Soret and alpha, beta bands are significantly increased. New near-infrared charge-transfer intensity is observed at 1000-2300 nm with a peak near 2050 nm. These changes are interpreted as resulting from a high-spin to low-spin transition at ferric heme o brought about by the binding of cyanide ion. The energy of the near-infrared charge-transfer band suggests that the cyanide ion is bridged to the CuB of the binuclear site. Treatment of fast cytochrome bo with hydrogen peroxide also causes a red shift in the position of the Soret absorbance, to 412 nm, and a loss of the 625-nm absorption shoulder. Changes in the magnetic-circular-dichroism spectrum at 450-600 nm are observed, but there is no significant increase in the intensity of the magnetic-circular-dichroism Soret band and no new near-infrared charge-transfer bands are detected, ruling out a similar high-spin to low-spin transition at heme o.(ABSTRACT TRUNCATED AT 400 WORDS)


Asunto(s)
Grupo Citocromo b , Citocromos/química , Proteínas de Escherichia coli , Escherichia coli/metabolismo , Hemo/análisis , Hierro/análisis , Conformación Proteica , Dicroismo Circular , Peróxido de Hidrógeno , Magnetismo , Espectrofotometría , Relación Estructura-Actividad
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