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1.
BMJ Mil Health ; 2023 Sep 14.
Artículo en Inglés | MEDLINE | ID: mdl-37709508

RESUMEN

INTRODUCTION: Older veterans with multimorbidity experience physical, mental and social factors which may negatively impact health and healthcare access. Physical function, behaviour change skills and loneliness may not be addressed during traditional physical rehabilitation. Thus, a multicomponent telerehabilitation programme could address these unmet needs. This programme evaluation assessed the safety, feasibility and change in patient outcomes for a multicomponent telerehabilitation programme. METHODS: Individuals were eligible if they were a veteran/spouse, age ≥50 years and had ≥3 comorbidities. The telerehabilitation programme included four core components: (1) High-intensity rehabilitation, (2) Coaching interventions, (3) Social support and (4) Technology. Physical therapists delivered the 12-week programme and collected patient outcomes at baseline, 4 weeks, 8 weeks and 12 weeks. Programme evaluation measures included safety events (occurrence and type), feasibility (adherence) and patient outcomes (physical function). Safety and feasibility outcomes were analysed using descriptive statistics. The mean pre-post programme difference and 95% CI for patient outcomes were generated using paired t-tests. RESULTS: Twenty-one participants enrolled in the telerehabilitation programme; most were male (81%), white (72%) and non-Hispanic (76%), with an average of 5.7 (3.0) comorbidities. Prevalence of insession safety events was 3.2% (0.03 events/session). Fifteen (71.4%) participants adhered to the programme (attended ≥80% of sessions). Mean (95% CI) improvements for physical function are as follows: 4.7 (2.4 to 7.0) repetitions for 30 s sit to stand, 6.0 (4.0 to 9.0) and 5.0 (2.0 to 9.0) repetitions for right arm curl and left arm curl, respectively, and 31.8 (15.9 to 47.7) repetitions for the 2 min step test. CONCLUSION: The telerehabilitation programme was safe, feasible and demonstrated preprogramme to postprogramme improvements in physical function measures while addressing unmet needs in a vulnerable population. These results support a randomised clinical trial while informing programme and process adaptations.

2.
J Fish Dis ; 41(6): 901-919, 2018 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-28782801

RESUMEN

Sea lice are a constraint on the sustainable growth of Scottish marine salmonid aquaculture. As part of an integrated pest management approach, farms coordinate procedures within spatial units. We present observations of copepodids being at relatively greater density than nauplii in upper waters, which informs the development of surface layer sea lice transmission modelling of Loch Linnhe, Scotland, for informing farm parasite management. A hydrodynamic model is coupled with a biological particle-tracking model, with characteristics of plankton sea lice. Simulations are undertaken for May and October 2011-2013, forced by local wind data collected for those periods. Particles are continually released from positions representing farm locations, weighted by relative farm counts, over a 2-week period and tracked for a further 5 days. A comparison is made between modelled relative concentrations against physical and biological surveys to provide confidence in model outputs. Connectivity between farm locations is determined in order to propose potential coordination areas. Generally, connectivity depends on flow patterns in the loch and decreases with increased farm separation. The connectivity indices are used to estimate the origins of the sea lice population composition at each site, which may influence medicinal regimens to avoid loss of efficacy.


Asunto(s)
Distribución Animal , Copépodos/fisiología , Infestaciones Ectoparasitarias/veterinaria , Enfermedades de los Peces/epidemiología , Factores de Edad , Animales , Acuicultura , Copépodos/crecimiento & desarrollo , Infestaciones Ectoparasitarias/epidemiología , Hidrodinámica , Modelos Biológicos , Escocia/epidemiología
3.
J Microsc ; 240(1): 83-6, 2010 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-21050216

RESUMEN

Confocal microscopy has facilitated measurement of stained lipid volume in Lepeophtheirus salmonis copepodid larvae. Quantity of lipid, location and morphology of vesicles may allow an estimate of age and viability.


Asunto(s)
Copépodos/fisiología , Lípidos/análisis , Microscopía Confocal , Envejecimiento , Animales , Copépodos/química , Infestaciones Ectoparasitarias/parasitología , Infestaciones Ectoparasitarias/veterinaria , Enfermedades de los Peces/parasitología , Larva/química , Salmón/parasitología
4.
J Fish Dis ; 29(5): 293-300, 2006 May.
Artículo en Inglés | MEDLINE | ID: mdl-16677319

RESUMEN

Infectious salmon anaemia is an important disease of Atlantic salmon. One of the current methods of diagnosis is the indirect fluorescent antibody test (IFAT), using a monoclonal antibody specific to the haemagglutinin of the virus. The conformationally dependent nature of this antibody could be a drawback in its usefulness in other tests. This study describes the development and optimization of a polyclonal antiserum against infectious salmon anaemia virus, including a method of separating virus from cell culture components within culture supernatant. The antiserum was subsequently optimized for use in a variety of immunological diagnostic tests, including IFAT and an alkaline phosphatase-based immunoassay, and Western blot.


Asunto(s)
Enfermedades de los Peces/diagnóstico , Enfermedades de los Peces/virología , Sueros Inmunes , Isavirus/inmunología , Infecciones por Orthomyxoviridae/veterinaria , Salmo salar/virología , Fosfatasa Alcalina/metabolismo , Animales , Anticuerpos Antivirales/biosíntesis , Western Blotting/veterinaria , Línea Celular , Electroforesis en Gel de Poliacrilamida/veterinaria , Técnica del Anticuerpo Fluorescente Indirecta/normas , Técnica del Anticuerpo Fluorescente Indirecta/veterinaria , Formaldehído/química , Sueros Inmunes/biosíntesis , Técnicas para Inmunoenzimas/métodos , Técnicas para Inmunoenzimas/normas , Técnicas para Inmunoenzimas/veterinaria , Riñón/virología , Infecciones por Orthomyxoviridae/diagnóstico , Infecciones por Orthomyxoviridae/inmunología , Conejos
5.
Biochemistry ; 40(25): 7446-52, 2001 Jun 26.
Artículo en Inglés | MEDLINE | ID: mdl-11412097

RESUMEN

A new crystal structure of the A-isozyme of O-acetylserine sulfhydrylase-A (OASS) with chloride bound to an allosteric site located at the dimer interface has recently been determined [Burkhard, P., Tai, C.-H., Jansonius, J. N., and Cook, P. F. (2000) J. Mol. Biol. 303, 279-286]. Data have been obtained from steady state and presteady-state kinetic studies and from UV-visible spectral studies to characterize the allosteric anion-binding site. Data obtained with chloride and sulfate as inhibitors indicate the following: (i) chloride and sulfate prevent the formation of the external aldimines with L-cysteine or L-serine; (ii) chloride and sulfate increase the external aldimine dissociation constants for O-acetyl-L-serine, L-methionine, and 5-oxo-L-norleucine; (iii) chloride and sulfate bind to the allosteric site in the internal aldimine and alpha-aminoacrylate external aldimine forms of OASS; (iv) sulfate also binds to the active site. Sulfide behaves in a manner identical to chloride and sulfate in preventing the formation of the L-serine external aldimine. The binding of chloride to the allosteric site is pH independent over the pH range 7-9, suggesting no ionizable enzyme side chains ionize over this pH range. Inhibition by sulfide is potent (K(d) is 25 microM at pH 8) suggesting that SH(-) is the physiologic inhibitory species.


Asunto(s)
Aniones/química , Proteínas Bacterianas/química , Cisteína Sintasa/química , Sitio Alostérico , Proteínas Bacterianas/antagonistas & inhibidores , Proteínas Bacterianas/metabolismo , Unión Competitiva , Cloruros/química , Cisteína/biosíntesis , Cisteína Sintasa/antagonistas & inhibidores , Cisteína Sintasa/metabolismo , Inhibidores Enzimáticos/química , Concentración de Iones de Hidrógeno , Cinética , Modelos Químicos , Norleucina/análogos & derivados , Norleucina/química , Unión Proteica , Espectrofotometría Ultravioleta , Sulfatos/química , Sulfuros/química
6.
Arch Biochem Biophys ; 388(2): 267-75, 2001 Apr 15.
Artículo en Inglés | MEDLINE | ID: mdl-11368164

RESUMEN

Serine-glyoxylate aminotransferase (SGAT) from Hyphomicrobium methylovorum is a pyridoxal 5'-phosphate (PLP) enzyme that catalyzes the interconversion of L-serine and glyoxylate to hydroxypyruvate and glycine. The initial velocity and dead-end inhibition patterns are consistent with a ping-pong kinetic mechanism. The Km values for L-serine and the alternative substrate ketomalonate are 0.28 +/- 0.02 and 1.13 +/- 0.08 mM, respectively. The spectrum of SGAT at pH 7.5 shows an absorbance maximum at 413 nm and a shoulder centered at 330 nm corresponding to the ketoenamine and enolimine forms of the protonated Schiff's base with the enolimine tautomer predominating. As determined by the changes in the enzyme absorbance spectrum the enzyme can be converted from the E-PLP to the E-pyridoxamine 5'-phosphate (E-PMP) form on addition of L-serine. The enzyme can subsequently be converted back to E-PLP by addition of glyoxylate or hydroxypyruvate. The enzyme displays a pH-dependent spectral change with a pK of about 8.2 which is ascribed to the ionization of an enzymatic residue that effects the tautomeric equilibrium between the ketoenamine and enolimine tautomers of the protonated aldimine. The V/K(L-serine) pH profile displays two pK values at pH 7.5 and 8.5 with limiting slopes of 1 and -1. The V/K(ketomalonate) pH profile displays one pK at 8.2 on the basic side with a limiting slope of 1 and the log K(I oxalate) pH profile shows one pK on the basic side at pH 7.2. The data suggest the active enzyme is the protonated aldimine and an enzymatic base with a pK of 7.5 accepts a proton from the alpha-amine of substrate to initiate catalysis.


Asunto(s)
Hyphomicrobium/enzimología , Transaminasas/química , Concentración de Iones de Hidrógeno , Cinética , Espectrofotometría Ultravioleta , Transaminasas/metabolismo
7.
Acc Chem Res ; 34(1): 49-59, 2001 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-11170356

RESUMEN

O-Acetylserine sulfhydrylase catalyzes the replacement of the beta-acetoxy group of O-acetyl-L-serine with sulfide to generate L-cysteine. The reaction represents the final step in the biosynthesis of L-cysteine in enteric bacteria and plants. A quinonoid intermediate has not been detected using a variety of kinetic and spectroscopic probes for the wild-type or mutant enzymes, ruling out an E1 mechanism. The structure of the external Schiff base intermediate indicates an anti elimination. O-Acetylserine sulfhydrylase is the only known pyridoxal 5'-phosphate-dependent enzyme that catalyzes a beta-elimination reaction to have an anti E2 mechanism.


Asunto(s)
Cisteína Sintasa/metabolismo , Fosfato de Piridoxal/metabolismo , Cinética , Modelos Moleculares , Conformación Proteica
8.
Biochemistry ; 39(51): 16238-43, 2000 Dec 26.
Artículo en Inglés | MEDLINE | ID: mdl-11123954

RESUMEN

A bifunctional enzyme, fructose-6-phosphate, 2-kinase:fructose-2, 6-bisphosphatase, catalyzes synthesis and hydrolysis of fructose 2, 6-bisphosphate. The phosphatase reaction occurs in two steps: the formation of a phosphoenzyme intermediate and release of beta-D-fructose 6-phosphate, followed by hydrolysis of the phosphoenzyme. The objective of this study was to determine whether E325 in the Fru 2,6-Pase active site is an acid-base catalyst. The pH-rate profile for k(cat) for the wild-type enzyme exhibits pK values of 5.6 and 9.1. The pH dependence of k(cat) for the E325A mutant enzyme gives an increase in the acidic pK from 5.6 to 6.1. Formate, acetate, propionate, and azide accelerate the rate of hydrolysis of the E325A mutant enzyme, but not of the wild-type enzyme. Azide and formate, the smallest of the weak acids tested, are the most potent activators. The k(cat) vs pH profile of the E325A mutant enzyme in the presence of formate is similar to that of the wild-type enzyme. Taken together, these data are consistent with E325 serving an acid-base role in the phosphatase reaction. The exogenous low MW weak acids act as a replacement general base in the hydrolysis of the phosphoenzyme intermediate, rescuing some of the activity lost upon eliminating the glutamate side chain.


Asunto(s)
Ácido Glutámico/química , Monoéster Fosfórico Hidrolasas/química , Alanina/genética , Animales , Ácidos Carboxílicos/química , Catálisis , Activación Enzimática/genética , Formiatos/química , Ácido Glutámico/genética , Concentración de Iones de Hidrógeno , Cinética , Masculino , Peso Molecular , Fosfofructoquinasa-2 , Monoéster Fosfórico Hidrolasas/genética , Ratas , Azida Sódica/química , Testículo
9.
J Mol Biol ; 303(2): 279-86, 2000 Oct 20.
Artículo en Inglés | MEDLINE | ID: mdl-11023792

RESUMEN

A new crystal structure of O-acetylserine sulfhydrylase (OASS) has been solved with chloride bound at an allosteric site and sulfate bound at the active site. The bound anions result in a new "inhibited" conformation, that differs from the "open" native or "closed" external aldimine conformations. The allosteric site is located at the OASS dimer interface. The new inhibited structure involves a change in the position of the "moveable domain" (residues 87-131) to a location that differs from that in the open or closed forms. Formation of the external aldimine with substrate is stabilized by interaction of the alpha-carboxyl group of the substrate with a substrate-binding loop that is part of the moveable domain. The inhibited conformation prevents the substrate-binding loop from interacting with the alpha-carboxyl group, and hinders formation of the external Schiff base and thus subsequent chemistry. Chloride may be an analog of sulfide, the physiological inhibitor. Finally, these results suggest that OASS represents a new class of PLP-dependent enzymes that is regulated by small anions.


Asunto(s)
Cloruros/metabolismo , Cisteína Sintasa/química , Cisteína Sintasa/metabolismo , Salmonella typhimurium/enzimología , Regulación Alostérica , Sitio Alostérico , Aniones/metabolismo , Aniones/farmacología , Cloruros/farmacología , Cristalografía por Rayos X , Cisteína/biosíntesis , Cisteína/metabolismo , Cisteína Sintasa/antagonistas & inhibidores , Dimerización , Enlace de Hidrógeno , Modelos Moleculares , Estructura Secundaria de Proteína , Estructura Terciaria de Proteína , Fosfato de Piridoxal/metabolismo , Salmonella typhimurium/metabolismo , Relación Estructura-Actividad , Sulfatos/metabolismo , Sulfuros/metabolismo
10.
Biochemistry ; 39(39): 11955-60, 2000 Oct 03.
Artículo en Inglés | MEDLINE | ID: mdl-11009609

RESUMEN

Site-directed mutagenesis was used to change K199 in the Ascaris suum NAD-malic enzyme to A and R and Y126 to F. The K199A mutant enzyme gives a 10(5)-fold decrease in V and a 10(6)-fold decrease in V/K(malate) compared to the WT enzyme. In addition, the ratio for partitioning of the oxalacetate intermediate toward pyruvate and malate changes from a value of 0.4 for the WT enzyme to 1.6 for K199A, and repeating the experiment with A-side NADD gives isotope effects of 3 and 1 for the WT and K199A mutant enzymes, respectively. The K199R mutant enzyme gives only a factor of 10 decrease in V, and the pK for the general acid in this mutant enzyme has increased from 9 for the WT enzyme to >10 for the K199R mutant enzyme. Tritium exchange from solvent into pyruvate is catalyzed by the WT enzyme, but not by the K199A mutant enzyme. The Y126F mutant enzyme gives a 10(3)-fold decrease in V. The oxalacetate partition ratio and isotope effect on oxalacetate reduction for the Y126F mutant enzyme are identical, within error, to those measured for the WT enzyme. Thus, Y126 is important to the overall reaction, but its role at present is unclear. Data are consistent with K199 functioning as the general acid that protonates C3 of enolpyruvate to generate the pyruvate product in the malic enzyme reaction.


Asunto(s)
Lisina/química , Malato Deshidrogenasa/química , NAD/química , Alanina/genética , Secuencia de Aminoácidos , Sustitución de Aminoácidos/genética , Animales , Arginina/genética , Ascaris suum/enzimología , Ascaris suum/genética , Catálisis , Secuencia Conservada , Concentración de Iones de Hidrógeno , Cinética , Lisina/genética , Malato Deshidrogenasa/genética , Malato Deshidrogenasa/aislamiento & purificación , Datos de Secuencia Molecular , Mutagénesis Sitio-Dirigida , Ácido Oxaloacético/química , Ácido Pirúvico/química , Solventes , Tritio/química
11.
Artículo en Inglés | MEDLINE | ID: mdl-10800596

RESUMEN

The 31P NMR data suggest slight differences in the structures around the 5'-P for the internal Schiff base and the lanthionine external Schiff base (both largely ketoeneamine) and a large difference for enolimine portion of the serine external Schiff base. Addition of cysteine or serine increase delayed fluorescence and triplet to singlet energy transfer. Addition of OAS exhibits a splitting of the 0,0 vibronic, the result of two distinct conformations, likely enolimine and ketoeneamine tautomers. Nonetheless, the alpha-amino-acrylate Schiff base conformation differs from either the internal or external Schiff base conformations. All of the time-resolved fluorescence data are consistent with conformation changes reflecting redistribution of ketoeneamine and enolimine tautomers as catalysis occurs. It is important to remember that the structural changes are substantial. The native structure (internal Schiff base) is active site open, while the K41A mutant enzyme (ketoeneamine external Schiff base) is active site closed. The trigger for the conformational change from open to closed as one goes from the internal to external Schiff base is the occupancy of the alpha-carboxyl subsite of the active site (Burkhard et al., 1999). Associated with this, as observed in pH-rate profiles, pH-dependent changes in phosphorescence, and pH-dependent changes in fluorescence enhancement upon binding acetate or cysteine is an enzyme group with a pK in the range 7-8. Dependent on the protonation state of the enzyme group, structural changes likely occur that also reflect a redistribution of the tautomeric equilibrium. Finally, the minimal catalytic cycle can likely be pictured as shown in Fig. 20. The changes may be pH dependent, and the open conformations for the internal Schiff base and the alpha-aminoacrylate Schiff base are not identical structurally, as expected because of the increased stability of the latter.


Asunto(s)
Cisteína Sintasa/metabolismo , Cisteína/biosíntesis , Secuencia de Aminoácidos , Cisteína Sintasa/química , Enterobacteriaceae/enzimología , Modelos Moleculares , Datos de Secuencia Molecular , Plantas/enzimología , Fosfato de Piridoxal/metabolismo
12.
Biochemistry ; 39(4): 718-26, 2000 Feb 01.
Artículo en Inglés | MEDLINE | ID: mdl-10651637

RESUMEN

4-Oxalocrotonate decarboxylase (4-OD) and vinylpyruvate hydratase (VPH) from Pseudomonas putida mt-2 form a complex that converts 2-oxo-3-hexenedioate to 2-oxo-4-hydroxypentanoate in the catechol meta fission pathway. To facilitate mechanistic and structural studies of the complex, the two enzymes have been coexpressed and the complex has been purified to homogeneity. In addition, Glu-106, a potential catalytic residue in VPH, has been changed to glutamine, and the resulting E106QVPH mutant has been coexpressed with 4-OD and purified to homogeneity. The 4-OD/E106QVPH complex retains full decarboxylase activity, with comparable kinetic parameters to those observed for 4-OD in the wild-type complex, but is devoid of any detectable hydratase activity. Decarboxylation of (5S)-2-oxo-3-[5-D]hexenedioate by either the 4-OD/VPH complex or the mutant complex generates 2-hydroxy-2,4E-[5-D]pentadienoate in D(2)O. Ketonization of 2-hydroxy-2,4-pentadienoate by the wild-type complex is highly stereoselective and results in the formation of 2-oxo-(3S)-[3-D]-4-pentenoate, while the mutant complex generates a racemic mixture. These results indicate that 2-hydroxy-2, 4-pentadienoate is the product of 4-OD and that 2-oxo-4-pentenoate results from a VPH-catalyzed process. On this basis, the previously proposed hypothesis for the conversion of 2-oxo-3-hexenedioate to 2-oxo-4-hydroxypentanoate has been revised [Lian, H., and Whitman, C. P. (1994) J. Am. Chem. Soc. 116, 10403-10411]. Finally, the observed (13)C kinetic isotope effect on the decarboxylation of 2-oxo-3-hexenedioate by the 4-OD/VPH complex suggests that the decarboxylation step is nearly rate-limiting. Because the value is not sensitive to either magnesium or manganese, it is likely that the transition state for carbon-carbon bond cleavage is late and that the metal positions the substrate and polarizes the carbonyl group, analogous to its role in oxalacetate decarboxylase.


Asunto(s)
Carboxiliasas/biosíntesis , Carboxiliasas/química , Isótopos de Carbono , Carboxiliasas/genética , Deuterio , Activación Enzimática/genética , Escherichia coli/genética , Vectores Genéticos/síntesis química , Ácido Glutámico/química , Ácido Glutámico/genética , Glutamina/química , Glutamina/genética , Hidroliasas/genética , Cinética , Mutagénesis Sitio-Dirigida , Resonancia Magnética Nuclear Biomolecular , Protones , Pseudomonas putida/enzimología , Pseudomonas putida/genética , Proteínas Recombinantes/biosíntesis , Proteínas Recombinantes/síntesis química , Proteínas Recombinantes/aislamiento & purificación , Estereoisomerismo
13.
J Biol Chem ; 274(52): 36935-43, 1999 Dec 24.
Artículo en Inglés | MEDLINE | ID: mdl-10601247

RESUMEN

D-Serine dehydratase (DSD) is a pyridoxal 5'-phosphate-dependent enzyme that catalyzes the conversion of D-serine to pyruvate and ammonia. Spectral studies of enzyme species where the natural cofactor was substituted by pyridoxal 5'-sulfate (PLS), pyridoxal 5-deoxymethylene phosphonate (PDMP), and pyridoxal 5'-phosphate monomethyl ester (PLPMe) were used to gain insight into the structural basis for binding of cofactor and substrate analogues. PDMP-DSD exhibits 35% of the activity of the native enzyme, whereas PLS-DSD and PLPMe-DSD are catalytically inactive. The emission spectrum of native DSD when excited at 280 nm shows maxima at 335 and 530 nm. The energy transfer band at 530 nm is very likely generated as a result of the proximity of Trp-197 to the protonated internal Schiff base. The cofactor analogue-reconstituted DSD species exhibit emission intensities decreasing from PLS-DSD, to PLPMe-DSD, and PDMP-DSD, when excited at 415 nm. Large increases in fluorescence intensity at 530 (540) nm can be observed for cofactor analogue-reconstituted DSD in the presence of substrate analogues when excited at 415 nm. In the absence and presence of substrate analogues, virtually identical far UV CD spectra were obtained for all DSD species. The visible CD spectra of native DSD, PDMP-DSD, and PLS-DSD exhibit a band centered on the visible absorption maximum with nearly identical intensity. Addition of substrate analogues to native and cofactor analogue-reconstituted DSD species results in most cases in a decrease or elimination of ellipticity. The results are interpreted in terms of local conformational changes and/or changes in the orientation of the bound cofactor (analogue).


Asunto(s)
Escherichia coli/enzimología , L-Serina Deshidratasa/química , Fosfato de Piridoxal/química , Aminoácidos/farmacología , Sitios de Unión , Catálisis , Dicroismo Circular , Fluorescencia , L-Serina Deshidratasa/antagonistas & inhibidores , L-Serina Deshidratasa/metabolismo , Conformación Proteica
14.
Biochemistry ; 38(35): 11231-8, 1999 Aug 31.
Artículo en Inglés | MEDLINE | ID: mdl-10471272

RESUMEN

Site-directed mutagenesis was used to change K183 of sheep liver 6-phosphogluconate dehydrogenase to A, E, H, C, Q, R, and M to probe its possible role as a general base catalyst. Each of the mutant proteins was characterized with respect to its kinetic parameters at pH 7 and the pH dependence of kinetic parameters for the K183R mutant enzyme. The only mutant enzyme that gives a significant amount of catalysis is the K183R mutant, and the extent of catalysis is decreased by about 3 orders of magnitude; the general base pK is perturbed to a pH value of >9. All other mutant enzymes exhibit rates that are decreased by about 4 orders of magnitude compared to that of the wild-type enzyme. Data are consistent with the general base function of K183.


Asunto(s)
Lisina/metabolismo , Fosfogluconato Deshidrogenasa/metabolismo , Secuencia de Aminoácidos , Sustitución de Aminoácidos/genética , Animales , Catálisis , Deuterio/química , Concentración de Iones de Hidrógeno , Cinética , Hígado/enzimología , Lisina/química , Lisina/genética , Datos de Secuencia Molecular , Mutagénesis Sitio-Dirigida , Fosfogluconato Deshidrogenasa/química , Fosfogluconato Deshidrogenasa/genética , Proteínas Recombinantes/química , Proteínas Recombinantes/metabolismo , Ovinos
15.
Biochemistry ; 38(32): 10527-32, 1999 Aug 10.
Artículo en Inglés | MEDLINE | ID: mdl-10441149

RESUMEN

The NAD-malic enzyme cDNA has been subcloned into the pQE expression vector, expressed with a six-His tag, and purified. The His-tagged enzyme is purified by a combination of Ni-NTA and orange A agarose column chromatography with a yield of 45% and an estimated purity of >90%. The tag and linker have no effect on the kinetic parameters of the enzyme compared to the wild-type enzyme. Alanine-scanning site-directed mutagenesis has been carried out on all of the conserved neutral acid residues of the NAD-malic enzyme from Ascaris suum. Data obtained confirm the predicted role of D178 and D295 in metal ion binding, the likely role of D294, D361, and E440 in the NAD binding site, and the role of E58 and D272 in malate binding. Decreases in V/E(t) by 10(4)-fold and in V/K(malate)E(t) by 10(7)-fold, when D295 is changed to alanine, suggest that it is a likely candidate for the general base that accepts a proton from the malate hydroxyl in the oxidation step.


Asunto(s)
Alanina/genética , Malato Deshidrogenasa/química , Malato Deshidrogenasa/genética , Animales , Ascaris suum/enzimología , Sitios de Unión/genética , Cationes Bivalentes , Secuencia Conservada , Cinética , Malato Deshidrogenasa/aislamiento & purificación , Malato Deshidrogenasa/metabolismo , Malatos/metabolismo , Mutagénesis Sitio-Dirigida , Proteínas Recombinantes/química , Proteínas Recombinantes/genética , Proteínas Recombinantes/aislamiento & purificación , Proteínas Recombinantes/metabolismo
16.
J Mol Biol ; 291(4): 941-53, 1999 Aug 27.
Artículo en Inglés | MEDLINE | ID: mdl-10452898

RESUMEN

Covalent binding of L-methionine as an external aldimine to the pyridoxal 5'-phosphate-cofactor in the K41A mutant of O-acetylserine sulfhydrylase from Salmonella typhimurium induces a large conformational change in the protein. Methionine mimics the action of the substrate O-acetyl-L-serine during catalysis. The alpha-carboxylate moiety of L-methionine in external aldimine linkage with the active site pyridoxal 5'-phosphate forms a hydrogen bonding network to the "asparagine-loop" P67-T68-N69-G70 which adopts a different conformation than in the native protein. The side-chain nitrogen of Asn69 moves more than 7 A to make a hydrogen bond to the alpha-carboxylate group of the inhibitor. As the external aldimine is formed, the PLP tilts by 13 degrees along its longitudinal axis such that C4' moves toward the entrance to the active site and the side-chain of the methionine is directed toward the active site entrance. The local rearrangement acts as a trigger to induce a large global conformational change in the protein. A subdomain comprised of beta-strand 4, alpha-helix 3, beta-strand 5 and alpha-helix 4 moves towards the active site by a rotation of 7 degrees. This subdomain movement results in a reduction of the severe twist of its central beta-sheet and reduces the active site entrance to a small hole, giving access only to small molecules like sulfide, the second substrate, or acetate, the first product.


Asunto(s)
Cisteína Sintasa/química , Cisteína Sintasa/metabolismo , Salmonella typhimurium/enzimología , Aspartato Aminotransferasas/química , Aspartato Aminotransferasas/metabolismo , Dominio Catalítico/genética , Cristalografía por Rayos X , Cisteína Sintasa/genética , Dimerización , Enlace de Hidrógeno , Ligandos , Metionina/metabolismo , Modelos Moleculares , Mutación Puntual , Conformación Proteica , Estructura Secundaria de Proteína , Salmonella typhimurium/genética , Estereoisomerismo , Triptófano Sintasa/química , Triptófano Sintasa/metabolismo
17.
Arch Biochem Biophys ; 365(2): 335-43, 1999 May 15.
Artículo en Inglés | MEDLINE | ID: mdl-10328829

RESUMEN

The affinity analogue, 2',3'-dialdehyde ATP has been used to chemically modify the ATP-inhibitory site of Ascaris suum phosphofructokinase, thereby locking the enzyme into a less active T-state. This enzyme form has a maximum velocity that is 10% that of the native enzyme in the direction of fructose 6-phosphate (F6P) phosphorylation. The enzyme displays sigmoid saturation for the substrate fructose 6-phosphate (S0.5 (F6P) = 19 mM and nH = 2.2) at pH 6.8 and a hyperbolic saturation curve for MgATP with a Km identical to that for the native enzyme. The allosteric effectors, fructose 2,6-bisphosphate and AMP, do not affect the S0.5 for F6P but produce a slight (1.5- and 2-fold, respectively) V-type activation with Ka values (effector concentration required for half-maximal activation) of 0.40 and 0.24 mM, respectively. Their activating effects are additive and not synergistic. The kinetic mechanism for the modified enzyme is steady-state-ordered with MgATP as the first substrate and MgADP as the last product to be released from the enzyme surface. The decrease in V and V/K values for the reactants likely results from a decrease in the equilibrium constant for the isomerization of the E:MgATP binary complex, thus favoring an unisomerized form. The V and V/KF6P are pH dependent with similar pK values of about 7 on the acid side and 9.8 on the basic side. The microenvironment of the active site appears to be affected minimally as evidenced by the similarity of the pK values for the groups involved in the binding site for F6P in the modified and native enzymes.


Asunto(s)
Adenosina Trifosfato/análogos & derivados , Adenosina Trifosfato/metabolismo , Ascaris suum/enzimología , Fosfofructoquinasa-1/metabolismo , Adenosina Monofosfato/farmacología , Adenosina Trifosfato/farmacología , Marcadores de Afinidad , Animales , Sitios de Unión , Fructosadifosfatos/farmacología , Cinética , Modelos Químicos , Fosfofructoquinasa-1/química
18.
Biochemistry ; 38(14): 4398-402, 1999 Apr 06.
Artículo en Inglés | MEDLINE | ID: mdl-10194359

RESUMEN

The NAD-malic enzyme from Ascaris suum catalyzes the divalent metal ion-dependent oxidative decarboxylation of L-malate to give pyruvate and CO2, with NAD+ as the oxidant. Alpha-secondary tritium kinetic isotope effects were measured with NAD+ or APAD+ and L-malate-2-H(D) and several different divalent metal ions. The alpha-secondary tritium kinetic isotope effects are slightly higher than 1 with NAD+ and L-malate as substrates, much larger than the expected inverse isotope effect for a hybridization change from sp2 to sp3. The alpha-secondary tritium kinetic isotope effects are reduced to values near 1 with L-malate-2-D as the substrate, regardless of the metal ion that is used. Data suggest the presence of quantum mechanical tunneling and coupled motion in the malic enzyme reaction when NAD+ and malate are used as substrates. Isotope effects were also measured using the D/T method with NAD+ and Mn2+ as the substrate pair. A Swain-Schaad exponent of 2.2 (less than the value of 3.26 expected for strictly semiclassical behavior) is estimated, suggesting the presence of other slow steps along the reaction pathway. With APAD+ and Mn2+ as the substrate pair, inverse alpha-secondary tritium kinetic isotope effects are observed, and a Swain-Schaad exponent of 3.3 is estimated, consistent with rate-limiting hydride transfer and no quantum mechanical tunneling or coupled motion. Data are discussed in terms of the malic enzyme mechanism and the theory developed by Huskey for D/T isotope effects as an indicator of tunneling [Huskey, W. P. (1991) J. Phys. Org. Chem. 4, 361-366].


Asunto(s)
Malato Deshidrogenasa/química , Malatos/química , NAD/química , Protones , Animales , Ascaris suum/enzimología , Bovinos , Deuterio/química , Cinética , Oxidación-Reducción , Especificidad por Sustrato , Tritio
19.
Biochim Biophys Acta ; 1429(2): 317-30, 1999 Jan 11.
Artículo en Inglés | MEDLINE | ID: mdl-9989217

RESUMEN

Static and time-resolved fluorescence of the internal aldimine of the pyridoxal 5'-phosphate (PLP)-dependent enzyme O-acetylserine sulfhydrylase (OASS) and those of free PLP, and the PLP-L-valine Schiff base have been measured to gain insight into the photophysics of PLP bound to OASS. Exciting at 330 nm, free coenzyme exhibits a band at 415 nm, whereas PLP-valine and OASS (also when excited at their absorbance maxima) exhibit a structured emission with a peak at 420 nm and shoulders at 490 and 530 nm. The emission bands at 420 and 490 nm are attributed to the enolimine and ketoenamine tautomers of the internal aldimine, respectively, while the 530 nm emission might arise from a dipolar species formed upon proton dissociation in the excited state. Time-resolved fluorescence of OASS (PLP-valine), excited at 412 nm (415 nm) and collected at lamda > 470 nm, indicates the presence of two components characterized by lifetimes (tau) of 0.6 (0.08) and 3.8 (1.55) ns with equal fractional intensity (f). In the presence of acetate the slow component dominates OASS emission with f of 0.98. Excitation at 350 nm as a function of emission wavelengths (400-560 nm) shows at least three components. The f of the slow component increases from 400 to 440 nm, then decreases, whereas the f of the intermediate and fast components behave in the opposite way. Results indicate that: (i) the fast component is associated with the emission at 530 nm; (ii) the slow component is associated with the emission at 420 nm; (iii) a fast additive component, characterized by a very short lifetime, is present on the blue side of the emission spectrum; (iv) the intermediate component results from overlapping contributions, including the emission of the band at 490 nm, that could not be resolved; (v) the increased emission at 490 nm, caused by acetate binding, is likely due to the stabilization of the ketoenamine tautomer induced by an increase in polarity of the active site microenvironment and/or a decrease in proton dissociation in the excited state; (vi) excitation at 330 nm, where the enolimine tautomer absorbs, leads to emission decays typical of the ketoenamine.


Asunto(s)
Cisteína Sintasa/química , Acetatos , Sitios de Unión , Fluorescencia , Fluorometría/métodos , Concentración de Iones de Hidrógeno , Isomerismo , Fosfato de Piridoxal/química , Bases de Schiff/química , Espectrofotometría Ultravioleta , Valina/química
20.
J Biol Chem ; 274(4): 2166-75, 1999 Jan 22.
Artículo en Inglés | MEDLINE | ID: mdl-9890979

RESUMEN

A bifunctional enzyme, fructose-6-phosphate,2-kinase/fructose 2, 6-bisphosphatase (Fru-6-P,2-kinase/Fru-2,6-Pase), catalyzes synthesis and degradation of fructose 2,6-bisphosphate (Fru-2,6-P2). Previously, the rat liver Fru-2,6-Pase reaction (Fru-2,6-P2 --> Fru-6-P + Pi) has been shown to proceed via a phosphoenzyme intermediate with His258 phosphorylated, and mutation of the histidine to alanine resulted in complete loss of activity (Tauler, A., Lin, K., and Pilkis, S. J. (1990) J. Biol. Chem. 265, 15617-15622). In the present study, it is shown that mutation of the corresponding histidine (His256) of the rat testis enzyme decreases activity by less than a factor of 10 with a kcat of 17% compared with the wild type enzyme. Mutation of His390 (in close proximity to His256) to Ala results in a kcat of 12.5% compared with the wild type enzyme. Attempts to detect a phosphohistidine intermediate with the H256A mutant enzyme were unsuccessful, but the phosphoenzyme is detected in the wild type, H390A, R255A, R305S, and E325A mutant enzymes. Data demonstrate that the mutation of His256 induces a change in the phosphatase hydrolytic reaction mechanism. Elimination of the nucleophilic catalyst, H256A, results in a change in mechanism. In the H256A mutant enzyme, His390 likely acts as a general base to activate water for direct hydrolysis of the 2-phosphate of Fru-2,6-P2. Mutation of Arg255 and Arg305 suggests that the arginines probably have a role in neutralizing excess charge on the 2-phosphate and polarizing the phosphoryl for subsequent transfer to either His256 or water. The role of Glu325 is less certain, but it may serve as a general acid, protonating the leaving 2-hydroxyl of Fru-2,6-P2.


Asunto(s)
Histidina/metabolismo , Monoéster Fosfórico Hidrolasas/metabolismo , Animales , Sitios de Unión , Dominio Catalítico , Histidina/genética , Cinética , Espectroscopía de Resonancia Magnética , Espectrometría de Masas , Mutagénesis Sitio-Dirigida , Fosfofructoquinasa-2 , Monoéster Fosfórico Hidrolasas/química , Monoéster Fosfórico Hidrolasas/genética , Fosforilación , Conformación Proteica , Ratas
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