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1.
AJNR Am J Neuroradiol ; 42(5): 916-920, 2021 05.
Artículo en Inglés | MEDLINE | ID: mdl-33664110

RESUMEN

BACKGROUND AND PURPOSE: Embolization of the middle meningeal artery for treatment of refractory or recurrent chronic subdural hematomas has gained momentum during the past few years. Little has been reported on the use of the n-BCA liquid embolic system for middle meningeal artery embolization. We present the technical feasibility of using diluted n-BCA for middle meningeal artery embolization. MATERIALS AND METHODS: We sought to examine the safety and technical feasibility of the diluted n-BCA liquid embolic system for middle meningeal artery embolization. Patients with chronic refractory or recurrent subdural hematomas were prospectively enrolled from September 2019 to June 2020. The primary outcome was the safety and technical feasibility of the use of diluted n-BCA for embolization of the middle meningeal artery. The secondary end point was the efficacy in reducing hematoma volume. RESULTS: A total of 16 patients were prospectively enrolled. Concomitant burr-hole craniotomies were performed in 12 of the 16 patients. Two patients required an operation following middle meningeal artery embolization for persistent symptoms. The primary end point was met in 100% of cases in which there were no intra- or postprocedural complications. Distal penetration of the middle meningeal artery branches was achieved in all the enrolled cases. A 7-day post-middle meningeal artery embolization follow-up head CT demonstrated improvement (>50% reduction in subdural hematoma volume) in 9/15 (60%) patients, with 6/15 (40%) showing an unchanged or stable subdural hematoma. At day 21, available CT scans demonstrated substantial further improvement (>75% reduction in subdural hematoma volume). CONCLUSIONS: Embolization of the middle meningeal artery using diluted n-BCA and ethiodized oil (1:6) is safe and feasible from a technical standpoint. The use of a dextrose 5% bolus improves distal penetration of the glue.


Asunto(s)
Adhesivos/uso terapéutico , Embolización Terapéutica/métodos , Hematoma Subdural Crónico/terapia , Arterias Meníngeas , Anciano , Estudios de Factibilidad , Glucosa/uso terapéutico , Humanos , Masculino , Estudios Prospectivos
2.
Acta Crystallogr D Struct Biol ; 73(Pt 1): 9-21, 2017 Jan 01.
Artículo en Inglés | MEDLINE | ID: mdl-28045381

RESUMEN

A number of X-ray analyses of an enzyme involved in a key early stage of tetrapyrrole biosynthesis are reported. Two structures of human 5-aminolaevulinate dehydratase (ALAD), native and recombinant, have been determined at 2.8 Šresolution, showing that the enzyme adopts an octameric quaternary structure in accord with previously published analyses of the enzyme from a range of other species. However, this is in contrast to the finding that a disease-related F12L mutant of the human enzyme uniquely forms hexamers [Breinig et al. (2003), Nature Struct. Biol. 10, 757-763]. Monomers of all ALADs adopt the TIM-barrel fold; the subunit conformation that assembles into the octamer includes the N-terminal tail of one monomer curled around the (α/ß)8 barrel of a neighbouring monomer. Both crystal forms of the human enzyme possess two monomers per asymmetric unit, termed A and B. In the native enzyme there are a number of distinct structural differences between the A and B monomers, with the latter exhibiting greater disorder in a number of loop regions and in the active site. In contrast, the second monomer of the recombinant enzyme appears to be better defined and the active site of both monomers clearly possesses a zinc ion which is bound by three conserved cysteine residues. In native human ALAD, the A monomer also has a ligand resembling the substrate ALA which is covalently bound by a Schiff base to one of the active-site lysines (Lys252) and is held in place by an ordered active-site loop. In contrast, these features of the active-site structure are disordered or absent in the B subunit of the native human enzyme. The octameric structure of the zinc-dependent ALAD from the hyperthermophile Pyrobaculum calidifontis is also reported at a somewhat lower resolution of 3.5 Å. Finally, the details are presented of a high-resolution structure of the Escherichia coli ALAD enzyme co-crystallized with a noncovalently bound moiety of the product, porphobilinogen (PBG). This structure reveals that the pyrrole side-chain amino group is datively bound to the active-site zinc ion and that the PBG carboxylates interact with the enzyme via hydrogen bonds and salt bridges with invariant residues. A number of hydrogen-bond interactions that were previously observed in the structure of yeast ALAD with a cyclic intermediate resembling the product PBG appear to be weaker in the new structure, suggesting that these interactions are only optimal in the transition state.

3.
Acta Crystallogr F Struct Biol Commun ; 71(Pt 10): 1258-63, 2015 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-26457516

RESUMEN

The enzyme 2,4'-dihydroxyacetophenone dioxygenase (DAD) catalyses the conversion of 2,4'-dihydroxyacetophenone to 4-hydroxybenzoic acid and formic acid. This enzyme is a very unusual dioxygenase in that it cleaves a C-C bond in a substituent of the aromatic ring rather than within the ring itself. Whilst it has been shown that DAD is a tetramer in solution, the recently solved crystal structure of the Alcaligenes sp. 4HAP enzyme was in fact dimeric rather than tetrameric. Since the use of limited chymotrypsinolysis, which apparently results in removal of the first 20 or so N-terminal residues of DAD, was necessary for crystallization of the protein, it was investigated whether this was responsible for the change in its oligomerization state. Gel-filtration and analytical ultracentrifugation studies were conducted, which confirmed that chymotrypsinolysed DAD has an apparent molecular weight of around 40 kDa, corresponding to a dimer. In contrast, the native enzyme has a molecular weight in the 70-80 kDa region, as expected for the tetramer. The structural basis for tetramerization has been investigated by the use of several docking servers, and the results are remarkably consistent with the tetrameric structure of a homologous cupin protein from Ralstonia eutropha (PDB entry 3ebr).


Asunto(s)
Alcaligenes/enzimología , Dioxigenasas/química , Multimerización de Proteína , Biocatálisis , Cromatografía en Gel , Cristalización , Cristalografía por Rayos X , Modelos Moleculares , Estructura Cuaternaria de Proteína , Electricidad Estática , Ultracentrifugación
4.
Acta Crystallogr D Biol Crystallogr ; 71(Pt 3): 615-31, 2015 Mar.
Artículo en Inglés | MEDLINE | ID: mdl-25760610

RESUMEN

The protein calexcitin was originally identified in molluscan photoreceptor neurons as a 20 kDa molecule which was up-regulated and phosphorylated following a Pavlovian conditioning protocol. Subsequent studies showed that calexcitin regulates the voltage-dependent potassium channel and the calcium-dependent potassium channel as well as causing the release of calcium ions from the endoplasmic reticulum (ER) by binding to the ryanodine receptor. A crystal structure of calexcitin from the squid Loligo pealei showed that the fold is similar to that of another signalling protein, calmodulin, the N- and C-terminal domains of which are known to separate upon calcium binding, allowing interactions with the target protein. Phosphorylation of calexcitin causes it to translocate to the cell membrane, where its effects on membrane excitability are exerted and, accordingly, L. pealei calexcitin contains two protein kinase C phosphorylation sites (Thr61 and Thr188). Thr-to-Asp mutations which mimic phosphorylation of the protein were introduced and crystal structures of the corresponding single and double mutants were determined, which suggest that the C-terminal phosphorylation site (Thr188) exerts the greatest effects on the protein structure. Extensive NMR studies were also conducted, which demonstrate that the wild-type protein predominantly adopts a more open conformation in solution than the crystallographic studies have indicated and, accordingly, normal-mode dynamic simulations suggest that it has considerably greater capacity for flexible motion than the X-ray studies had suggested. Like calmodulin, calexcitin consists of four EF-hand motifs, although only the first three EF-hands of calexcitin are involved in binding calcium ions; the C-terminal EF-hand lacks the appropriate amino acids. Hence, calexcitin possesses two functional EF-hands in close proximity in its N-terminal domain and one functional calcium site in its C-terminal domain. There is evidence that the protein has two markedly different affinities for calcium ions, the weaker of which is most likely to be associated with binding of calcium ions to the protein during neuronal excitation. In the current study, site-directed mutagenesis has been used to abolish each of the three calcium-binding sites of calexcitin, and these experiments suggest that it is the single calcium-binding site in the C-terminal domain of the protein which is likely to have a sensory role in the neuron.


Asunto(s)
Proteínas de Unión al Calcio/química , Decapodiformes/química , Simulación de Dinámica Molecular , Proteínas del Tejido Nervioso/química , Sustitución de Aminoácidos , Animales , Proteínas de Unión al Calcio/genética , Proteínas de Unión al Calcio/metabolismo , Cristalografía por Rayos X , Decapodiformes/genética , Decapodiformes/metabolismo , Mutación Missense , Proteínas del Tejido Nervioso/genética , Proteínas del Tejido Nervioso/metabolismo , Estructura Terciaria de Proteína , Relación Estructura-Actividad
5.
Acta Crystallogr D Biol Crystallogr ; 70(Pt 9): 2444-54, 2014 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-25195757

RESUMEN

The enzyme 2,4'-dihydroxyacetophenone dioxygenase (DAD) catalyses the conversion of 2,4'-dihydroxyacetophenone to 4-hydroxybenzoic acid and formic acid with the incorporation of molecular oxygen. Whilst the vast majority of dioxygenases cleave within the aromatic ring of the substrate, DAD is very unusual in that it is involved in C-C bond cleavage in a substituent of the aromatic ring. There is evidence that the enzyme is a homotetramer of 20.3 kDa subunits, each containing nonhaem iron, and its sequence suggests that it belongs to the cupin family of dioxygenases. In this paper, the first X-ray structure of a DAD enzyme from the Gram-negative bacterium Alcaligenes sp. 4HAP is reported, at a resolution of 2.2 Å. The structure establishes that the enzyme adopts a cupin fold, forming dimers with a pronounced hydrophobic interface between the monomers. The catalytic iron is coordinated by three histidine residues (76, 78 and 114) within a buried active-site cavity. The iron also appears to be tightly coordinated by an additional ligand which was putatively assigned as a carbonate dianion since this fits the electron density optimally, although it might also be the product formate. The modelled carbonate is located in a position which is highly likely to be occupied by the α-hydroxyketone group of the bound substrate during catalysis. Modelling of a substrate molecule in this position indicates that it will interact with many conserved amino acids in the predominantly hydrophobic active-site pocket where it undergoes peroxide radical-mediated heterolysis.


Asunto(s)
Alcaligenes/enzimología , Dioxigenasas/química , Secuencia de Aminoácidos , Dominio Catalítico , Cristalografía por Rayos X , Datos de Secuencia Molecular , Conformación Proteica , Homología de Secuencia de Aminoácido
6.
Acta Crystallogr F Struct Biol Commun ; 70(Pt 6): 823-6, 2014 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-24915102

RESUMEN

The enzyme 2,4'-dihydroxyacetophenone dioxygenase (or DAD) catalyses the conversion of 2,4'-dihydroxyacetophenone to 4-hydroxybenzoic acid and formic acid with the incorporation of molecular oxygen. Whilst the vast majority of dioxygenases cleave within the aromatic ring of the substrate, DAD is very unusual in that it is involved in C-C bond cleavage in a substituent of the aromatic ring. There is evidence that the enzyme is a homotetramer of 20.3 kDa subunits each containing nonhaem iron and its sequence suggests that it belongs to the cupin family of dioxygenases. By the use of limited chymotrypsinolysis, the DAD enzyme from Alcaligenes sp. 4HAP has been crystallized in a form that diffracts synchrotron radiation to a resolution of 2.2 Å.


Asunto(s)
Alcaligenes/enzimología , Cristalografía por Rayos X/métodos , Dioxigenasas/química , Secuencia de Bases , Cristalización , Cartilla de ADN , Hidrólisis , Reacción en Cadena de la Polimerasa
7.
Acta Crystallogr D Biol Crystallogr ; 70(Pt 3): 744-51, 2014 Mar.
Artículo en Inglés | MEDLINE | ID: mdl-24598743

RESUMEN

The enzyme porphobilinogen deaminase (PBGD; hydroxymethylbilane synthase; EC 2.5.1.61) catalyses an early step of the tetrapyrrole-biosynthesis pathway in which four molecules of the monopyrrole porphobilinogen are condensed to form a linear tetrapyrrole. The enzyme possesses a dipyrromethane cofactor, which is covalently linked by a thioether bridge to an invariant cysteine residue (Cys241 in the Bacillus megaterium enzyme). The cofactor is extended during the reaction by the sequential addition of the four substrate molecules, which are released as a linear tetrapyrrole product. Expression in Escherichia coli of a His-tagged form of B. megaterium PBGD has permitted the X-ray analysis of the enzyme from this species at high resolution, showing that the cofactor becomes progressively oxidized to the dipyrromethene and dipyrromethanone forms. In previously solved PBGD structures, the oxidized cofactor is in the dipyromethenone form, in which both pyrrole rings are approximately coplanar. In contrast, the oxidized cofactor in the B. megaterium enzyme appears to be in the dipyrromethanone form, in which the C atom at the bridging α-position of the outer pyrrole ring is very clearly in a tetrahedral configuration. It is suggested that the pink colour of the freshly purified protein is owing to the presence of the dipyrromethene form of the cofactor which, in the structure reported here, adopts the same conformation as the fully reduced dipyrromethane form.


Asunto(s)
Bacillus megaterium/enzimología , Hidroximetilbilano Sintasa/química , Porfobilinógeno/análogos & derivados , Secuencia de Aminoácidos , Bacillus megaterium/metabolismo , Cristalización , Cristalografía por Rayos X , Hidroximetilbilano Sintasa/metabolismo , Datos de Secuencia Molecular , Oxidación-Reducción , Porfobilinógeno/química , Porfobilinógeno/metabolismo
8.
Acta Crystallogr F Struct Biol Commun ; 70(Pt 1): 30-3, 2014 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-24419612

RESUMEN

Endothiapepsin is a typical member of the aspartic proteinase family. The catalytic mechanism of this family is attributed to two conserved catalytic aspartate residues, which coordinate the hydrolysis of a peptide bond. An oligopeptide inhibitor (IC50 = 0.62 µM) based on a reduced-bond transition-state inhibitor of mucorpepsin was co-crystallized with endothiapepsin and the crystal structure of the enzyme-inhibitor complex was determined at 1.35 Šresolution. A total of 12 hydrogen bonds between the inhibitor and the active-site residues were identified. The resulting structure demonstrates a number of novel subsite interactions in the active-site cleft.


Asunto(s)
Ácido Aspártico Endopeptidasas/antagonistas & inhibidores , Ácido Aspártico Endopeptidasas/química , Dipéptidos/farmacología , Inhibidores de Proteasas/farmacología , Ascomicetos/enzimología , Ácido Aspártico Endopeptidasas/metabolismo , Catálisis/efectos de los fármacos , Dominio Catalítico , Cristalización , Cristalografía por Rayos X , Dipéptidos/química , Dipéptidos/metabolismo , Enlace de Hidrógeno/efectos de los fármacos , Modelos Moleculares , Oxidación-Reducción , Inhibidores de Proteasas/química , Inhibidores de Proteasas/metabolismo
9.
Artículo en Inglés | MEDLINE | ID: mdl-23908040

RESUMEN

The enzyme porphobilinogen deaminase (PBGD; hydroxymethylbilane synthase; EC 2.5.1.61) catalyses an early step of the tetrapyrrole-biosynthesis pathway in which four molecules of the monopyrrole porphobilinogen are condensed to form a linear tetrapyrrole. The enzyme possesses a dipyrromethane cofactor which is covalently linked by a thioether bridge to an invariant cysteine residue. Expression in Escherichia coli of a His-tagged form of Bacillus megaterium PBGD permitted the crystallization and preliminary X-ray analysis of the enzyme from this species at high resolution.


Asunto(s)
Bacillus megaterium/enzimología , Proteínas Bacterianas/química , Hidroximetilbilano Sintasa/química , Tetrapirroles/química , Cristalización , Cristalografía por Rayos X
10.
Acta Crystallogr D Biol Crystallogr ; 69(Pt 3): 471-85, 2013 Mar.
Artículo en Inglés | MEDLINE | ID: mdl-23519422

RESUMEN

The enzyme porphobilinogen deaminase (PBGD; hydroxymethylbilane synthase; EC 2.5.1.61) catalyses a key early step of the haem- and chlorophyll-biosynthesis pathways in which four molecules of the monopyrrole porphobilinogen are condensed to form a linear tetrapyrrole. The active site possesses an unusual dipyrromethane cofactor which is extended during the reaction by the sequential addition of the four substrate molecules. The cofactor is linked covalently to the enzyme through a thioether bridge to the invariant Cys254. Until recently, structural data have only been available for the Escherichia coli and human forms of the enzyme. The expression of a codon-optimized gene for PBGD from Arabidopsis thaliana (thale cress) has permitted for the first time the X-ray analysis of the enzyme from a higher plant species at 1.45 Šresolution. The A. thaliana structure differs appreciably from the E. coli and human forms of the enzyme in that the active site is shielded by an extensive well defined loop region (residues 60-70) formed by highly conserved residues. This loop is completely disordered and uncharacterized in the E. coli and human PBGD structures. The new structure establishes that the dipyrromethane cofactor of the enzyme has become oxidized to the dipyrromethenone form, with both pyrrole groups approximately coplanar. Modelling of an intermediate of the elongation process into the active site suggests that the interactions observed between the two pyrrole rings of the cofactor and the active-site residues are highly specific and are most likely to represent the catalytically relevant binding mode. During the elongation cycle, it is thought that domain movements cause the bound cofactor and polypyrrole intermediates to move past the catalytic machinery in a stepwise manner, thus permitting the binding of additional substrate moieties and completion of the tetrapyrrole product. Such a model would allow the condensation reactions to be driven by the extensive interactions that are observed between the enzyme and the dipyrromethane cofactor, coupled with acid-base catalysis provided by the invariant aspartate residue Asp95.


Asunto(s)
Proteínas de Arabidopsis/química , Arabidopsis/enzimología , Dominio Catalítico , Hidroximetilbilano Sintasa/química , Tetrapirroles/química , Apoenzimas/química , Cristalografía por Rayos X , Unión Proteica
11.
Acta Crystallogr Sect F Struct Biol Cryst Commun ; 68(Pt 12): 1491-3, 2012 Dec 01.
Artículo en Inglés | MEDLINE | ID: mdl-23192030

RESUMEN

The enzyme porphobilinogen deaminase (PBGD; hydroxymethylbilane synthase; EC 2.5.1.61) catalyses a key early step of the haem-biosynthesis pathway in which four molecules of the monopyrrole porphobilinogen are condensed to form a linear tetrapyrrole. The enzyme possesses a dipyrromethane cofactor which is covalently linked by a thioether bridge to an invariant cysteine residue. Since PBGD catalyses a reaction which is common to the biosynthesis of both haem and chlorophyll, structural studies of a plant PBGD enzyme offer great potential for the discovery of novel herbicides. Until recently, structural data have only been available for the Escherichia coli and human forms of the enzyme. Expression in E. coli of a codon-optimized gene for Arabidopsis thaliana PBGD has permitted for the first time the crystallization and preliminary X-ray analysis of the enzyme from a plant species at high resolution.


Asunto(s)
Proteínas de Arabidopsis/química , Arabidopsis/enzimología , Hidroximetilbilano Sintasa/química , Tetrapirroles/biosíntesis , Arabidopsis/metabolismo , Proteínas de Arabidopsis/metabolismo , Cristalización , Cristalografía por Rayos X , Escherichia coli/genética , Escherichia coli/metabolismo , Hidroximetilbilano Sintasa/metabolismo , Modelos Moleculares , Porfobilinógeno/química , Porfobilinógeno/metabolismo , Conformación Proteica , Tetrapirroles/química
12.
Acta Crystallogr D Biol Crystallogr ; 68(Pt 5): 541-52, 2012 May.
Artículo en Inglés | MEDLINE | ID: mdl-22525752

RESUMEN

The analysis reported here describes detailed structural studies of endothiapepsin (the aspartic proteinase from Endothia parasitica), with and without bound inhibitors, and human pepsin 3b. Comparison of multiple crystal structures of members of the aspartic proteinase family has revealed small but significant differences in domain orientation in different crystal forms. In this paper, it is shown that these differences in domain orientation do not necessarily correlate with the presence or absence of bound inhibitors, but appear to stem at least partly from crystal contacts mediated by sulfate ions. However, since the same inherent flexibility of the structure is observed for other enzymes in this family such as human pepsin, the native structure of which is also reported here, the observed domain movements may well have implications for the mechanism of catalysis.


Asunto(s)
Proteasas de Ácido Aspártico/química , Ascomicetos/enzimología , Ácido Aspártico Endopeptidasas/antagonistas & inhibidores , Ácido Aspártico Endopeptidasas/química , Proteasas de Ácido Aspártico/antagonistas & inhibidores , Cristalografía por Rayos X , Humanos , Modelos Moleculares , Pepsina A/antagonistas & inhibidores , Pepsina A/química , Inhibidores de Proteasas/química , Inhibidores de Proteasas/farmacología , Conformación Proteica , Estructura Terciaria de Proteína
13.
Acta Crystallogr Sect F Struct Biol Cryst Commun ; 66(Pt 11): 1544-8, 2010 Nov 01.
Artículo en Inglés | MEDLINE | ID: mdl-21045318

RESUMEN

Noroviruses are the predominant cause of human epidemic nonbacterial gastroenteritis. Viral replication requires a cysteine protease that cleaves a 200 kDa viral polyprotein into its constituent functional parts. Here, the crystallization of the recombinant protease from the Southampton norovirus is described. Whilst the native crystals were found to diffract only to medium resolution (2.9 Å), cocrystals of an inhibitor complex diffracted X-rays to 1.7 Šresolution. The polypeptide inhibitor (Ac-EFQLQ-propenyl ethyl ester) possesses an amino-acid sequence designed to match the substrate specificity of the enzyme, but was synthesized with a reactive Michael acceptor group at the C-terminal end.


Asunto(s)
Endopeptidasas/química , Norovirus/enzimología , Inhibidores de Proteasas/química , Dominios y Motivos de Interacción de Proteínas , Cristalización , Cristalografía por Rayos X , Endopeptidasas/metabolismo , Cinética , Inhibidores de Proteasas/metabolismo
14.
Artículo en Inglés | MEDLINE | ID: mdl-20823511

RESUMEN

Burkholderia pseudomallei, the causative agent of melioidosis, possesses a type III protein secretion apparatus that is similar to those found in Salmonella and Shigella. A major function of these secretion systems is to inject virulence-associated proteins into target cells of the host organism. The bipD gene of B. pseudomallei encodes a secreted virulence factor that is similar in sequence and is most likely to be functionally analogous to IpaD from Shigella and SipD from Salmonella. Proteins in this family are thought to act as extracellular chaperones at the tip of the secretion needle to help the hydrophobic translocator proteins enter the target cell membrane, where they form a pore and may also link the translocon pore with the secretion needle. BipD has been crystallized in a monoclinic crystal form that diffracted X-rays to 1.5 A resolution and the structure was refined to an R factor of 16.1% and an Rfree of 19.8% at this resolution. The putative dimer interface that was observed in previous crystal structures was retained and a larger surface area was buried in the new crystal form.


Asunto(s)
Proteínas Bacterianas/química , Burkholderia pseudomallei/química , Proteínas de la Membrana/química , Cristalografía por Rayos X , Modelos Moleculares , Estructura Terciaria de Proteína
15.
J Struct Biol ; 168(2): 294-304, 2009 Nov.
Artículo en Inglés | MEDLINE | ID: mdl-19616102

RESUMEN

The X-ray structure of the holo-form of l-threonine dehydrogenase (TDH) from Thermococcus kodakaraensis (TkTDH) has been determined at 2.4A resolution. TDH catalyses the NAD(+)-dependent oxidation of l-threonine to 2-amino-3-ketobutyrate, and is one of the first enzymes in this family to be solved by X-ray crystallography. The enzyme is a homo-tetramer, each monomer consisting of 350 amino acids that form two domains; a catalytic domain and a nicotinamide co-factor (NAD(+))-binding domain, which contains an alpha/beta Rossmann fold motif. An extended twelve-stranded beta-sheet is formed by the association of pairs of monomers in the tetramer. TkTDH shows strong overall structural similarity to TDHs from thermophiles and alcohol dehydrogenases (ADH) from lower life forms, despite low sequence homology, exhibiting the same overall fold of the monomer and assembly of the tetramer. The structure reveals the binding site of the essential co-factor NAD(+) which is present in all subunits. Docking studies suggest a mode of interaction of TDH with 2-amino-3-ketobutyrate CoA ligase, the subsequent enzyme in the pathway for conversion of threonine to glycine. TDH is known to form a stable functional complex with 2-amino-3-ketobutyrate ligase, most probably to shield an unstable intermediate.


Asunto(s)
Oxidorreductasas de Alcohol/química , Oxidorreductasas de Alcohol/metabolismo , Thermococcus/enzimología , Oxidorreductasas de Alcohol/genética , Secuencia de Aminoácidos , Aminoácidos/metabolismo , Proteínas Bacterianas/química , Proteínas Bacterianas/genética , Proteínas Bacterianas/metabolismo , Sitios de Unión , Cristalografía por Rayos X , Cetoácidos/metabolismo , Datos de Secuencia Molecular , NAD/metabolismo , Multimerización de Proteína , Estructura Secundaria de Proteína , Homología de Secuencia de Aminoácido
16.
Postgrad Med J ; 84(997): 563-70, 2008 Nov.
Artículo en Inglés | MEDLINE | ID: mdl-19103813

RESUMEN

Simulation for medical and healthcare applications, although still in a relatively nascent stage of development, already has a history that can inform the process of further research and dissemination. The development of mannequin simulators used for education, training, and research is reviewed, tracing the motivations, evolution to commercial availability, and efforts toward assessment of efficacy of those for teaching cardiopulmonary resuscitation, cardiology skills, anaesthesia clinical skills, and crisis management. A brief overview of procedural simulators and part-task trainers is also presented, contrasting the two domains and suggesting that a thorough history of the 20+ types of simulator technologies would provide a useful overview and perspective. There has been relatively little cross fertilisation of ideas and methods between the two simulator domains. Enhanced interaction between investigators and integration of simulation technologies would be beneficial for the dissemination of the concepts and their applications.


Asunto(s)
Medicina Clínica/educación , Educación Médica/tendencias , Maniquíes , Materiales de Enseñanza , Medicina Clínica/tendencias , Humanos
17.
Artículo en Inglés | MEDLINE | ID: mdl-18765916

RESUMEN

The enzyme L-threonine dehydrogenase catalyses the NAD(+)-dependent conversion of L-threonine to 2-amino-3-ketobutyrate, which is the first reaction of a two-step biochemical pathway involved in the metabolism of threonine to glycine. Here, the crystallization and preliminary crystallographic analysis of L-threonine dehydrogenase (Tk-TDH) from the hyperthermophilic organism Thermococcus kodakaraensis KOD1 is reported. This threonine dehydrogenase consists of 350 amino acids, with a molecular weight of 38 kDa, and was prepared using an Escherichia coli expression system. The purified native protein was crystallized using the hanging-drop vapour-diffusion method and crystals grew in the tetragonal space group P4(3)2(1)2, with unit-cell parameters a = b = 124.5, c = 271.1 A. Diffraction data were collected to 2.6 A resolution and preliminary analysis indicates that there are four molecules in the asymmetric unit of the crystal.


Asunto(s)
Oxidorreductasas de Alcohol/química , Proteínas Arqueales/química , Thermococcus/enzimología , Oxidorreductasas de Alcohol/metabolismo , Proteínas Arqueales/fisiología , Frío , Cristalización , Cristalografía por Rayos X , Estabilidad de Enzimas/fisiología , Concentración de Iones de Hidrógeno
18.
J Dairy Sci ; 90(7): 3542-9, 2007 Jul.
Artículo en Inglés | MEDLINE | ID: mdl-17582138

RESUMEN

The objectives of this study were to compare Holstein (HO), Brown Swiss (BS), and their crosses for milk, fat, and protein yields, somatic cell score (SCS), days open (DO), and age at first calving (AFC), and to estimate the effects of heterosis and recombination. First through fifth lactation records were obtained from 19 herds milking crosses among BS and HO. The edited data set included 6,534 lactation records from 3,473 cows of the following breed combinations: 2,125 pure HO, 926 pure BS, 256 BS sire x HO dam (SH), 105 backcrosses to BS (SX), 18 HO sire x BS dam, and 43 backcrosses to HO. Least squares means for daily milk, fat, and protein yields, mature-equivalent milk, fat, and protein yields, SCS, DO, and AFC were calculated for breed combinations with a model that included fixed effects of age within parity (except for AFC), days in milk for daily yield and SCS, herd-year-season of calving, and breed combination. Cow and error were random effects. Breed combination was replaced with regressions on coefficients for heterosis and recombination in a second analysis. Last, data were analyzed with a 5-trait animal model that included a single pedigree file for both breeds and coefficients for heterosis and recombination. The least squares means for fat production were 1.21, 1.15, 1.27, and 1.16 kg for HO, BS, SH, and SX, respectively, which corresponds to a heterosis estimate of 7.30% and a recombination estimate of -3.76%. Heterosis and recombination estimates for protein production were 5.63% and -3.31%, respectively. Heterosis estimates increased for fat yield (10.38%) and protein yield (7.07%) when maternal grandsire identification from a known artificial insemination sire was required. Regression coefficients indicated an 11.44-d reduction in DO due to heterosis. Heterosis estimates for SCS were inconsistent. Regression on heterosis for SCS was significant and favorable (-0.22) when the breed of sire was BS, but nonsignificant and unfavorable when sire breed was HO (0.43). Heterosis estimates were favorable for all traits, whereas recombination effects tended to be unfavorable for yield traits. Reduced performance of future generations did not appear to be the result of inseminating crossbred cows with inferior sires. Results indicated that first-generation crosses among BS and HO compared favorably with HO. Yield in subsequent generations was somewhat below expectations, perhaps due to recombination loss in HO.


Asunto(s)
Cruzamiento , Bovinos/genética , Leche/química , Modelos Genéticos , Factores de Edad , Animales , Cruzamientos Genéticos , Femenino , Vigor Híbrido , Lactancia/genética , Análisis de los Mínimos Cuadrados , Masculino , Leche/citología , Proteínas de la Leche/genética , Fenotipo , Recombinación Genética
19.
J Dairy Sci ; 90(4): 1725-8, 2007 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-17369212

RESUMEN

The vacuum and teat-cup chamber ratio are important operating parameters that affect milking performance by milking machines. In addition, the design and composition of materials are major elements affecting the performance characteristics of (teat-cup) milking machine liners. The objective of this experiment was to determine the effects of vacuum and teat-cup chamber ratio on the performance of a unique mono-block silicone milking machine liner that is round in the open position and triangular in the collapsed position. System vacuum settings (set at receiver) were 40.6, 43.9, and 47.3 kPa, whereas teat-cup chamber ratios were 60:40, 65:35, and 70:30. Milk yield was greatest at a vacuum of 43.9 kPa. Manual adjustments and kickoffs were very low (<2%) at all vacuum levels and for all ratios. The interaction of vacuum level and ratio was significant for milking duration, peak flow rate, and average flow rate, but not for milk yield. Average and peak milk flow rates increased at each increasing vacuum level and each wider ratio, whereas milking duration decreased.


Asunto(s)
Bovinos/fisiología , Industria Lechera/instrumentación , Lactancia , Siliconas , Vacio , Animales , Industria Lechera/métodos , Femenino , Análisis de los Mínimos Cuadrados , Leche
20.
Prev Vet Med ; 78(3-4): 333-8, 2007 Mar 17.
Artículo en Inglés | MEDLINE | ID: mdl-17157398

RESUMEN

Measurement of heart-girth (chest circumference) is commonly used to estimate dairy heifer body weight from previously derived equations or tables. In this experiment, variability of heart-girth measurements as they are taken in the field was analyzed to determine the standard deviation within a group of 26 Holstein heifers of various ages weighing 42-590 kg. Standard deviations were 2.19 cm among 26 observers and 2.74 cm within any one observer. Repeatability between two heart-girth measurements by an individual observer on the same animal using a blind heart-girth tape was >0.99. Correlation coefficients between two measurements by different observers using blind measuring tapes on the same animal also were >0.99, with 99% of total differences due to observer and heifer, indicating very little random variation. A second part of this study was the validation of the most recently derived equation to calculate body weight from heart-girth. The equation was validated with data sets from universities across the United States and field data collected specifically for this study. Experimental and field data comprised of heart-girth and body weight measurements upheld the previously derived equation and support its continued use. These results allow more precise interpretation of heart-girth data collected from field studies with Holstein dairy heifers and provide more complete validation of existing body weight-prediction equations.


Asunto(s)
Abdomen/anatomía & histología , Peso al Nacer , Bovinos/anatomía & histología , Preñez/fisiología , Factores de Edad , Animales , Femenino , Valor Predictivo de las Pruebas , Embarazo , Reproducibilidad de los Resultados , Sensibilidad y Especificidad
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