Physiological and molecular effects of contaminants of emerging concerns of micro and nano-size in aquatic metazoans: overview and current gaps in Antarctic species.

Although Antarctica is the most isolated continent on Earth, its remote location does not protect it from the impacts of human activities. Antarctic metazoans such as filter-feeding invertebrates are a crucial component of the Antarctic benthos. They play a key role in the benthic-pelagic carbon flux in coastal areas by filtering particles and planktonic organisms from the sediment-water interface. Due to their peculiar ecological niche, these organisms can be considered a wasp-waist in the ecosystem, making them highly sensitive to marine pollution. Recently, anthropogenic particles such as micro-nanoplastics and manufactured nanoparticles (MNP) have been classified as contaminants of emerging concern (CEC) due to their small size range, which also overlaps with the preferred particle size ingested by aquatic metazoans. Indeed, it has been demonstrated that some species such as Antarctic krill can ingest, transform, and release MNPs, making them newly bioavailable for other Antarctic filter-feeding organisms. Similarly, the production and use of anthropogenic MNP are rapidly increasing, leading to a growing presence of materials, such as nano-sized metal-oxides, in the environment. For these reasons, it is important to provide evidence of the adverse effects of such emerging contaminants at sub-lethal concentrations in environmental risk assessments. These contaminants may cause cascade effects with consequences not only on individuals but also at the community and ecosystem levels. In this review, we discuss the state-of-the-art knowledge on the physiological and molecular effects of anthropogenic MNP in Antarctic aquatic metazoans. We further highlight the importance of identifying early biomarkers using sessile metazoans as sentinels of environmental health.

Towards an understanding of the epigenetics of schistosomes: a comparative epigenomic study.

As in perhaps all eukaryotes, schistosomes use a supplementary information transmitting system, the epigenetic inheritance system, to shape genetic information and to produce different phenotypes. In contrast to other important parasites, the study of epigenetic phenomena in schistosomes is still in its infancy. Nevertheless, we are beginning to grasp what goes on behind the epigenetic scene in this parasite. We have developed techniques of native chromatin immunoprecipitation (N-ChIP) and associated the necessary bioinformatics tools that allow us to run genome-wide comparative chromatin studies on Schistosoma mansoni at different stages of its life cycle, on different strains and on different sexes. We present here an application of such an approach to study the genetic and epigenetic basis for a phenotypic trait, the compatibility of S. mansoni with its invertebrate host Biomphalaria glabrata. We have applied the ChIP procedure to two strains that are either compatible or incompatible with their intermediate host. The precipitated DNA was sequenced and aligned to a reference genome and this information was used to determine regions in which both strands differ in their genomic sequence and/or chromatin structure. This procedure allowed us to identify candidate genes that display either genetic or epigenetic difference between the two strains.

Towards an understanding of the epigenetics of schistosomes: a comparative epigenomic study

As in perhaps all eukaryotes, schistosomes use a supplementary information transmitting system, the epigenetic inheritance system, to shape genetic information and to produce different phenotypes. In contrast to other important parasites, the study of epigenetic phenomena in schistosomes is still in its infancy. Nevertheless, we are beginning to grasp what goes on behind the epigenetic scene in this parasite. We have developed techniques of native chromatin immunoprecipitation (N-ChIP) and associated the necessary bioinformatics tools that allow us to run genome-wide comparative chromatin studies on Schistosoma mansoni at different stages of its life cycle, on different strains and on different sexes. We present here an application of such an approach to study the genetic and epigenetic basis for a phenotypic trait, the compatibility of S. mansoni with its invertebrate host Biomphalaria glabrata. We have applied the ChIP procedure to two strains that are either compatible or incompatible with their intermediate host. The precipitated DNA was sequenced and aligned to a reference genome and this information was used to determine regions in which both strands differ in their genomic sequence and/or chromatin structure. This procedure allowed us to identify candidate genes that display either genetic or epigenetic difference between the two strains.