Development of Rhizophora mangle (Rhizophoraceae) and Avicennia schaueriana (Avicenniaceae) in the presence of a hydrocarbon-degrading bacterial consortium and marine diesel oil.

The development of Rhizophora mangle and Avicennia schaueriana seedlings impacted by marine diesel oil (MDO) was evaluated in the presence or absence of a hydrocarbon-degrading bacterial consortium (HBC). The bioassays were conducted in a greenhouse during 6 months and consisted of three different treatments (control, MDO only and MDO + HBC). The bacterial consortium was mainly composed of Bacillus spp. (73%), but Rhizobium spp., Pseudomonas spp., Ochrobactrum spp., and Brevundimonas spp. were also present. After 6 months, A. schaueriana seedlings showed higher mortality compared to those of R. mangle; R. mangle exhibited 68% (control), 44% (MDO alone) and 50% (MDO + HBC) seedlings survivorship compared to 42% (control), 0% (MDO alone) and 4% (MDO + HBC) for A. schaueriana. This variability may be due to differences in species physiology. Stem growth, diameter and number of leaves remained constant during the 6 months of the experiment with marine diesel oil and hydrocarbon-degrading bacterial consortium (MDO + BBC). For both mangrove species, bacterial enzymatic activity in the sediments was sufficient to maintain cell counts of 107 cells cm-3 in the rhizospheric soil and possibly synthetize the extracellular polymeric substances (EPS) that may emulsify and solubilize oil products.

Unveiling the role of bioturbation on bacterial activity in metal-contaminated sediments.

The processes permeating the relationships between bioturbation and microorganisms remain poorly understood due to the difficulty of traditional techniques in quantifying their two- and three-dimensional aspects. We used cutting-edge technologies to address the macro- and microorganisms' interactions under metal-contamination. Bioturbation (mucus-lined gallery perimeter, mucus-lined gallery surface area, and gallery water volume) positively influence the carbohydrate consumption rate by the bacterial consortium, elevating bacterial metabolic activity, despite metal-contamination. Synchrotron-based 2D-µXRF revealed that the mucous lining by marine worm during bioturbation as the primary carbon source enhances metal immobilization by bacterial biofilm, improving the bacterial metabolic activity. Bioturbation thus can positively affect bacterial consortium that can use the mucus as a carbon source, which enhances the resistance to metals through biofilm formation in metal-contaminated sediments.

Monitoring of bacterial community structure and growth: An alternative tool for biofilm microanalysis.

Microorganisms, such as bacteria, tend to aggregate and grow on surfaces, secreting extracellular polymeric substances (EPS), forming biofilms. Biofilm formation is a life strategy, because through it microorganisms can create their own microhabitats. Whether for remediation of pollutants or application in the biomedical field, several methodological approaches are necessary for a more accurate analysis of the role and potential use of bacterial biofilms. The use of computerized microtomography to monitor biofilm growth appears to be an advantageous tool due to its non-destructive character and its ability to render 2D and 3D visualization of the samples. In this study, we used several techniques such as analysis of microbiological parameters and biopolymer concentrations to corroborate porosity quantified by 2D and 3D imaging. Quantification of the porosity of samples by microtomography was verified by increased enzymatic activity and, consequently, higher EPS biopolymer synthesis to form biofilm, indicating growth of the biofilm over 96 â€‹h. Our interdisciplinary approach provides a better understanding of biofilm growth, enabling integrated use of these techniques as an important tool in bioremediation studies of environments impacted by pollutants.

Effects of aeration on the suspended matter from a tropical and eutrophic estuary.

A comprehensive understanding of the complex biogeochemical interactions between organic matter and persistent contaminants in the suspended matter is vital for eco-efficient estuary recovery. However, little is known regarding aeration effects in suspended particulate aggregates. Therefore, this study aimed to investigate the effects of aeration on the suspended matter from a Tropical and Eutrophic estuarine environment. Anoxic water with 60 g/L of suspended particulate matter (SPM) was collected from Guanabara Bay, Rio de Janeiro, Brazil, transferred to experimental boxes and aerated for 61 days. SPM aggregates monitoring included abiotic variables measurements and, determination of total organic matter (TOM), biopolymers composition, bacterial activity, trace metals, and polycyclic aromatic hydrocarbons (PAHs) concentrations. The aeration enhanced dissolved oxygen (DO) concentration and the redox potential (Eh). However, from days 0 to 61 the predominant bacterial activities were denitrification and fermentation. Electron transport system activity increased after day 10, and aerobic activity was detected after day 19. In summary, aeration increased aerobic bacterial activity, lipids (LIP) and trace metal concentrations, although diminished protein/carbohydrate ratio and PAH concentration. Trace metals concentration (Ni, Pb, Cu, Cr, Mn, and Fe) were the highest on day 19 when the pH was 5.9. Copper presented toxic values (Cu > 20.0 µg/g). The pH showed a strong negative correlation with Eh (r = -0.94; p < 0.001). Acidic environment (pH ≤ 5.9) in marine ecosystems with high loads of toxic trace metals is unsafe for biota. Therefore, managers must be aware of the environmental and biological risks of introducing the aeration technique into a eutrophic marine environment.

Monitoring bioturbation by a small marine polychaete using microcomputed tomography.

Bioturbation is one of the principle biological processes involved in transporting particles and solutes within sediments, which contributes to the maintenance of biodiversity. In muddy polluted environments, bioturbation may increase pollutant flux at the water-sediment interface, thereby enhancing contaminant bioavailability. The behavior of organisms dictates bioturbation, and gallery shape influences the magnitude of solute transport. Thus, quantitative investigations of gallery shape are fundamental to understanding how pollutant and solute transport is enhanced by bioturbators in muddy sediments. However, there is a lack of tools for quantitatively analyzing gallery geometry, especially for assessing bioturbation and gallery properties through time. Despite the potential of microcomputed tomography (µCT) for quantitative analyses of bioturbation, few such studies have been carried out. Here, we aimed to investigate the potential of µCT for quantitatively assessing the shape and geometric properties of galleries made by small marine polychaetes and their evolution through time in muddy sediments. We focused on Laeonereis acuta (Treadwell, 1923) (Nereididae, Polychaeta), which is a key bioturbator in marine coastal ecosystems. Using 2D and 3D images generated from µCT, we evaluated L. acuta galleries and propose several indexes to quantitatively assess gallery evolution and the role of gallery parameters in bioturbation. Quantitative investigations of polychaete galleries using µCT can assist in monitoring how bioturbation influences sedimentary systems.

Evaluation of the sensitivity to zinc of ciliates Euplotes vannus and Euplotes crassus and their naturally associated bacteria isolated from a polluted tropical bay.

The aim of this study was to evaluate the Zn sensitivity of Euplotes vannus, Euplotes crassus, and their naturally associated bacteria sampled from sediments in the northwest and east regions of Guanabara Bay. The unexposed ciliates and bacteria did not appear to be negatively affected by 96 h of assay. In the control group, E. vannus exhibited an increase in the biomass content from 2.3 × 10(2) to 2.3 × 10(3) µg C cm(-3) between 0 and 96 h, and E. crassus increased up to 7.07 × 10(2) µg C cm(-3) at 48 h. The maximum biomass was pointed by E. crassus (1.33 × 10(3) µg C cm(-3)) in the presence of 0.005 mg Zn L(-1) and E. vannus was naturally associated bacteria (2.40 × 10(-1) µg C cm(-3)) in the presence of 1.0 mg Zn L(-1) (96 h). The growth of E. vannus from the northwest region showed concentration-dependent manners, and it is more sensitive to zinc than E. crassus from the southeast. Naturally associated bacteria showed better adaptation to increasing concentrations of Zn, and the Dunnett test showed that previous environmental selection is important. These results show that new bioremediation tools are necessary.

Organic matter and pyritization relationship in recent sediments from a tropical and eutrophic bay.

The degree of pyritization (DOP) and the extension of metals incorporation into pyrite was investigated at Guanabara Bay sediments. Maximum concentrations of total organic carbon (TOC), total sulfur, biopolymers and viable bacteria cells were observed in silted stations close to discharge points of sewage and minimum concentrations at sandy stations at the entrance of the bay. Pyrite iron concentrations (Fepy) was always lower than the reactive iron and Fepy were below the detection limit at sandy stations. The same trend was found to metals, which its degree of pyritization was Mn=Cu>As=Co>Ni>Cd>Zn≫Pb>Cr. The bay gathers all required factors to sulfate reduction and pyrite formation, once the C:S ratio express the reduced tendency conditions, almost half of the TOC present in its sediments is labile and both reactive sulfur and iron are available. However the degree of trace metals pyritization did not exceed 20%, consistent with the median DOP (29%).

Protists and bacteria interactions in the presence of oil.

Little is known about the role of protists and bacteria interactions during hydrocarbon biodegradation. This work focused on the effect of oil on protists from three different locations in Guanabara Bay and bacteria from Caulerpa racemosa (BCr), Dictyota menstrualis (BDm) and Laurencia obtusa (BLo) during a 96 h bioassay. Cryptomonadida (site 1, 2 and 3), Scuticociliatida (site 2) and Euplotes sp.1 and Euplotes sp.2 (site 3) appeared after incubation. The highest biomass observed in the controls was as follows: protist site 3 (6.0 µgC.cm-3, 96 h) compared to site 3 with oil (0.7 µgC.cm-3, 96 h); for bacteria, 8.6 µgC.cm-3 (BDm, 72 h) and 17.0 µgC.cm-3 (BCr with oil, 24 h). After treatment, the highest biomasses were as follows: protists at site 1 and BLo, 6.0 µgC.cm-3 (96 h), compared to site 1 and BLo with oil, 3.31 µgC.cm-3 (96 h); the bacterial biomass was 43.1 µgC.cm-3 at site 2 and BDm (96 h). At site 3 and BLo with oil, the biomass was 18.21 µgC.cm-3 (48 h). The highest biofilm proportions were observed from BCr 1.7 µm (96 h) and BLo with oil 1.8 µm (24 h). BCr, BLo and BDm enhanced biofilm size and reduced the capacity of protists to prey.

Superficial distribution of aromatic compounds and geomicrobiology of sediments from Suruí Mangrove, Guanabara Bay, RJ, Brazil.

The distribution of selected aromatic compounds and microbiology were assessed in superficial sediments from Suruí Mangrove, Guanabara Bay. Samples were collected at 23 stations, and particle size, organic matter, aromatic compounds, microbiology activity, biopolymers, and topography were determined. The concentration of aromatic compounds was distributed in patches over the entire mangrove, and their highest total concentration was determinated in the mangrove's central area. Particle size differed from most mangroves in that Suruí Mangrove has chernies on the edges and in front of the mangrove, and sand across the whole surface, which hampers the relationship between particle size and hydrocarbons. An average @ 10% p/p of organic matter was obtained, and biopolymers presented high concentrations, especially in the central and back areas of the mangrove. The biopolymers were distributed in high concentrations. The presence of fine sediments is an important factor in hydrocarbon accumulation. With high concentration of organic matter and biopolymers, and the topography with chernies and roots protecting the mangrove, calmer areas are created with the deposition of material transported by wave action. Compared to global distributions, concentrations of aromatic compounds in Suruí Mangrove may be classified from moderate to high, showing that the studied area is highly impacted.

Superficial distribution of aromatic compounds and geomicrobiology of sediments from Suruí Mangrove, Guanabara Bay, RJ, Brazil

The distribution of selected aromatic compounds and microbiology were assessed in superficial sediments from Suruí Mangrove, Guanabara Bay. Samples were collected at 23 stations, and particle size, organic matter, aromatic compounds, microbiology activity, biopolymers, and topography were determined. The concentration of aromatic compounds was distributed in patches over the entire mangrove, and their highest total concentration was determinated in the mangrove's central area. Particle size differed from most mangroves in that Suruí Mangrove has chernies on the edges and in front of the mangrove, and sand across the whole surface, which hampers the relationship between particle size and hydrocarbons. An average @ 10 percent p/p of organic matter was obtained, and biopolymers presented high concentrations, especially in the central and back areas of the mangrove. The biopolymers were distributed in high concentrations. The presence of fine sediments is an important factor in hydrocarbon accumulation. With high concentration of organic matter and biopolymers, and the topography with chernies and roots protecting the mangrove, calmer areas are created with the deposition of material transported by wave action. Compared to global distributions, concentrations of aromatic compounds in Suruí Mangrove may be classified from moderate to high, showing that the studied area is highly impacted.

A distribuição de compostos aromáticos selecionados e a microbiologia foram avaliados em sedimentos superficiais do Manguezal de Suruí, Baía de Guanabara. Amostras foram coletadas em 23 pontos e determinados a granulometria, matéria orgânica, compostos aromáticos, atividade microbiológica, biopolímeros e a topografia. A concentração dos compostos aromáticos foi distribuída em manchas por todo o manguezal e sua concentração total mais elevada foi encontrada na área central do manguezal. A granulometria diferiu da maioria dos manguezais, uma vez que no Manguezal de Suruí existem chernies nas bordas e na frente dos manguezais e areia através da superfície inteira, impedindo o relacionamento entre granulometria e os hidrocarbonetos. Uma média de 10 por cento p/p da matéria orgânica foi obtida e os biopolímeros apresentaram concentrações elevadas, especialmente na área central e fundo do Manguezal. Os biopolímeros se distribuíram em altas concentrações. A presença de finos sedimentos é fator importante na acumulação de hidrocarbonetos. Na concentração elevada de matéria orgânica e de biopolímeros, topografia com chernies e as raízes que protegem os manguezais, áreas mais calmas são criadas, com depósito do material transportado pela ação das ondas. Comparadas às distribuições globais, as concentrações das substâncias aromáticas neste manguezal podem ser classificadas de moderadas a elevadas, demonstrando que a área estudada está altamente impactada.

Caracterizaçäo fenotípica de estirpes de Bacillus circulans pertencentes a American Type Culture Collection (ATCC) / Prenotypic characterization of Bacillus circulans of the American Type Culture Collection (ATCC)

Foram estudados aspectos morfológicos, fisiológicos, bioquímicos e nutricionais de seis estirpes nomeadas B. circulans pela ATCC. Sendo a estirpe 4513 o holótipo da espécie, foi possível caracterizar como pertencentes ao grupo ATCC 4515, 4516 e 9995. ATCC 4513 pertence ao grupo morfológico II, apresenta atividade para catalase, beta-galactosidade e L-glutamato desidrogenase, hidrolisa o amido, o "Tween-80" e a composiçäo do DNA é 37,3 moles% GC. Näo utiliza ácidos tricarboxílicos, aminoácidos, amidas e compostos aromáticos. Cresce em NaC1 7% e acidifica meios de cultura contendo carboidratos. Em aerobiose, 87,8% dos carboidratos säo utilizados como fonte de carbono. ATCC 4530 e 14176 näo podem ser classificados como B. circulans. ATCC 4530 pertence ao grupo morfológico I. ATCC 14176 é aeróbica estrita, oxidase positiva e a composiçäo do DNA é 51,0 moles% GC