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1.
J Magn Reson ; 357: 107588, 2023 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-37976810

RESUMEN

We demonstrate the construction of 7 Tesla and 12 Tesla all high-temperature-superconducting (HTS) magnets, small enough to fit on your wrist. The size of the magnet reduces the cost of fabrication, decreases the fringe field to permit facile siting of magnets, and decreases the stored energy of high field magnets. These small HTS-based magnets are being developed for gyrotron microwave sources for use in high-field nuclear magnetic resonance applications. The 7 Tesla and 12 Tesla magnets employ a no-insulation winding technique and are cooled to 4.2 Kelvin in a liquid helium cryostat. The 7 Tesla magnet is a single pancake coil, made of only 9.4 m of HTS tape, with an inner diameter of 8 mm and an outer diameter of 24 mm. This magnet was charged up to 1168 Amperes, generating a field of 7.3 Tesla. The 12 Tesla magnet is comprised of two pancake coils (inner diameter of 10 mm and outer diameter of 27 mm) connected in series. This magnet reached its maximum field at a current of 850 Amperes.

2.
Magn Reson (Gott) ; 4(2): 231-241, 2023.
Artículo en Inglés | MEDLINE | ID: mdl-37904856

RESUMEN

Cryogenic magic angle spinning (MAS) is a standard technique utilized for dynamic nuclear polarization (DNP) in solid-state nuclear magnetic resonance (NMR). Here we describe the optimization and implementation of a stator for cryogenic MAS with 9.5 mm diameter spherical rotors, allowing for DNP experiments on large sample volumes. Designs of the stator and rotor for cryogenic MAS build on recent advancements of MAS spheres and take a step further to incorporate sample insert and eject and a temperature-independent spinning stability of ±1 Hz. At a field of 7 T and spinning at 2.0 kHz with a sample temperature of 105-107 K, DNP enhancements of 256 and 200 were observed for 124 and 223 µL sample volumes, respectively, each consisting of 4 M 13C, 15N-labeled urea and 20 mM AMUPol in a glycerol-water glassy matrix.

3.
J Magn Reson ; 343: 107305, 2022 10.
Artículo en Inglés | MEDLINE | ID: mdl-36191440

RESUMEN

Spherical rotors in magic angle spinning (MAS) nuclear magnetic resonance (NMR) experiments have potential advantages relative to cylindrical rotors in terms of ease of fabrication, low risk of rotor crash, easy sample exchange, and better microwave access. However, one major disadvantage so far of spherical rotors is poor NMR filling factor due to the small sample volume and large cylindrical radiofrequency (RF) coil. Here we present a novel NMR coil geometry in the form of a spherical coil. The spherical coil best fits the spherical sample to maximize sensitivity, while also providing excellent RF homogeneity. We further improve NMR sensitivity by employing a spherical shell as the rotor, thereby maximizing sample volume (219 µL in this case of 9.5 mm outer diameter spheres). The spinning gas is supplied by a 3D-printed ring stator external to the coil, thereby introducing a simplified form of MAS stators. In this apparatus, the RF field generated along the coil axis is perpendicular to the external magnetic field, regardless of rotor orientation. We observe a linear increase in sensitivity with increasing sample volume. We also simulate the RF performance of spherical and cylindrical solenoid coils with constant or variable pitch for spherical and cylindrical rotors, respectively. The simulation results show that spherical solenoid coils generate comparable B1 field intensities but have better homogeneity than cylindrical solenoid coils do.


Asunto(s)
Imagen por Resonancia Magnética , Ondas de Radio , Espectroscopía de Resonancia Magnética/métodos , Microondas , Simulación por Computador
4.
Nat Commun ; 12(1): 5293, 2021 09 06.
Artículo en Inglés | MEDLINE | ID: mdl-34489448

RESUMEN

The ATP hydrolysis transition state of motor proteins is a weakly populated protein state that can be stabilized and investigated by replacing ATP with chemical mimics. We present atomic-level structural and dynamic insights on a state created by ADP aluminum fluoride binding to the bacterial DnaB helicase from Helicobacter pylori. We determined the positioning of the metal ion cofactor within the active site using electron paramagnetic resonance, and identified the protein protons coordinating to the phosphate groups of ADP and DNA using proton-detected 31P,1H solid-state nuclear magnetic resonance spectroscopy at fast magic-angle spinning > 100 kHz, as well as temperature-dependent proton chemical-shift values to prove their engagements in hydrogen bonds. 19F and 27Al MAS NMR spectra reveal a highly mobile, fast-rotating aluminum fluoride unit pointing to the capture of a late ATP hydrolysis transition state in which the phosphoryl unit is already detached from the arginine and lysine fingers.


Asunto(s)
Adenosina Difosfato/química , Adenosina Trifosfato/química , Proteínas Bacterianas/química , ADN Bacteriano/química , AdnB Helicasas/química , Helicobacter pylori/enzimología , Adenosina Difosfato/metabolismo , Adenosina Trifosfato/metabolismo , Compuestos de Aluminio/química , Compuestos de Aluminio/metabolismo , Arginina/química , Arginina/metabolismo , Proteínas Bacterianas/genética , Proteínas Bacterianas/metabolismo , Dominio Catalítico , Clonación Molecular , ADN Bacteriano/genética , ADN Bacteriano/metabolismo , AdnB Helicasas/genética , AdnB Helicasas/metabolismo , Escherichia coli/enzimología , Escherichia coli/genética , Fluoruros/química , Fluoruros/metabolismo , Expresión Génica , Helicobacter pylori/genética , Hidrólisis , Lisina/química , Lisina/metabolismo , Modelos Moleculares , Resonancia Magnética Nuclear Biomolecular , Unión Proteica , Conformación Proteica en Hélice alfa , Conformación Proteica en Lámina beta , Dominios y Motivos de Interacción de Proteínas , Proteínas Recombinantes/química , Proteínas Recombinantes/genética , Proteínas Recombinantes/metabolismo , Especificidad por Sustrato , Termodinámica
5.
J Biomol NMR ; 75(6-7): 255-272, 2021 Jul.
Artículo en Inglés | MEDLINE | ID: mdl-34170475

RESUMEN

Progress in NMR in general and in biomolecular applications in particular is driven by increasing magnetic-field strengths leading to improved resolution and sensitivity of the NMR spectra. Recently, persistent superconducting magnets at a magnetic field strength (magnetic induction) of 28.2 T corresponding to 1200 MHz proton resonance frequency became commercially available. We present here a collection of high-field NMR spectra of a variety of proteins, including molecular machines, membrane proteins, viral capsids, fibrils and large molecular assemblies. We show this large panel in order to provide an overview over a range of representative systems under study, rather than a single best performing model system. We discuss both carbon-13 and proton-detected experiments, and show that in 13C spectra substantially higher numbers of peaks can be resolved compared to 850 MHz while for 1H spectra the most impressive increase in resolution is observed for aliphatic side-chain resonances.


Asunto(s)
Cápside/química , Isótopos de Carbono , Proteínas de la Membrana/química , Resonancia Magnética Nuclear Biomolecular , Protones
6.
Chembiochem ; 21(3): 324-330, 2020 02 03.
Artículo en Inglés | MEDLINE | ID: mdl-31310428

RESUMEN

Protein-nucleic acid interactions play important roles not only in energy-providing reactions, such as ATP hydrolysis, but also in reading, extending, packaging, or repairing genomes. Although they can often be analyzed in detail with X-ray crystallography, complementary methods are needed to visualize them in complexes, which are not crystalline. Here, we show how solid-state NMR spectroscopy can detect and classify protein-nucleic interactions through site-specific 1 H- and 31 P-detected spectroscopic methods. The sensitivity of 1 H chemical-shift values on noncovalent interactions involved in these molecular recognition processes is exploited allowing us to probe directly the chemical bonding state, an information, which is not directly accessible from an X-ray structure. We show that these methods can characterize interactions in easy-to-prepare sediments of the 708 kDa dodecameric DnaB helicase in complex with ADP:AlF4- :DNA, and this despite the very challenging size of the complex.


Asunto(s)
AdnB Helicasas/química , Resonancia Magnética Nuclear Biomolecular , Nucleótidos/análisis , Cristalografía por Rayos X , AdnB Helicasas/metabolismo , Enlace de Hidrógeno , Modelos Moleculares , Nucleótidos/metabolismo , Isótopos de Fósforo , Protones
7.
J Magn Reson ; 303: 91-104, 2019 06.
Artículo en Inglés | MEDLINE | ID: mdl-31030064

RESUMEN

The spin dynamics of dissolution DNP samples consisting of 4.5 M [13C]urea in a mixture of (1/1)Vol glycerol/water using 4-Oxo-TEMPO as a radical was investigated. We analyzed the DNP dynamics as function of radical concentration at 7 T and 3.4 T static magnetic field as well as function of deuteration of the solvent matrix at the high field. The spin dynamics could be reproduced in all cases, at least qualitatively, by a thermodynamic model based on spin temperatures of the nuclear Zeeman baths and an electron non-Zeeman (dipolar) bath. We find, however, that at high field (7 T) and low radical concentrations (25 mM) the nuclear spins do not reach the same spin temperature indicating a weak coupling of the two baths. At higher radical concentrations, as well as for all radical concentrations at low field (3.4 T), the two nuclear Zeeman baths reach the same spin temperature within experimental errors. Additionally, the spin system was prepared with different initial conditions. For these cases, the thermodynamic model was able to predict the time evolution of the system well. While the DNP profiles do not give clear indications to a specific polarization transfer mechanism, at high field (7 T) increased coupling is seen. The EPR line shapes cannot clarify this in absence of ELDOR type experiments, nevertheless DNP profiles and dynamics under frequency-modulated microwave irradiation illustrate the expected increase in coupling between electrons with increasing radical concentration.

8.
J Magn Reson ; 299: 196-201, 2019 02.
Artículo en Inglés | MEDLINE | ID: mdl-30677601

RESUMEN

Three-dimensional spatially resolved full-volume imaging by magnetic resonance force microscopy at room temperature is described. Spatial resolution in z-dimension is achieved by using the magnetic-field gradient of a ferromagnetic particle that is also used for the force detection of the magnetic resonance. The gradient of the radiofrequency pulses generated by two separate wire-bonded microcoils is used for spatial resolution in x- and y-dimension. To enhance the sensitivity of our measurement Hadamard- and Fourier-encoding schemes are applied due to their multiplex effect. Measurements were taken on a patterned (NH4)2SO4 crystal sample. From the calculated magnetic field distributions, a 3D image was reconstructed with a voxel volume of about 5 µm3 (1.2 µm × 3.0 µm × 1.4 µm in x-, y- and z-dimension).

9.
J Magn Reson ; 298: 85-90, 2019 01.
Artículo en Inglés | MEDLINE | ID: mdl-30529895

RESUMEN

We demonstrate the detection of picoliter amounts of water and triethylenetetramine by a magnetic-resonance-force-microscopy (MRFM) setup operated in the gradient-on-cantilever geometry at room temperature. A magnetic field gradient is produced by a ferromagnetic SmCo particle glued to the tip of a micromechanical resonator (cantilever). The liquids are enclosed in a micro-capillary to protect them from the high vacuum environment needed for sensitive detection. We describe simple spectroscopic experiments as proton T1 - relaxation, Rabi nutation curves and Hahn-echo measurements.

10.
J Biomol NMR ; 72(3-4): 171-177, 2018 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-30536187

RESUMEN

Magic-angle spinning (MAS) is mandatory in solid-state NMR experiments to achieve resolved spectra. In rare cases, instabilities in the rotation or damage of either the rotor or the rotor cap can lead to a so called "rotor crash" involving a disintegration of the sample container and possibly the release of an aerosol or of dust. We present a modified design of a 3.2 mm probe with a confining chamber which in case of a rotor crash prevents the release of aerosols and possibly hazardous materials. 1D and 2D NMR experiments show that such a hazardous material-confining MAS probe ("CONFINE-MAS" probe) has a similar sensitivity compared to a standard probe and performs equally well in terms of spinning stability. We illustrate the CONFINE-MAS probe properties and performance by application to a fungal amyloid.


Asunto(s)
Falla de Equipo , Resonancia Magnética Nuclear Biomolecular/instrumentación , Seguridad , Amiloide , Contención de Riesgos Biológicos/métodos , Proteínas Fúngicas
11.
J Biomol NMR ; 69(3): 157-164, 2017 Nov.
Artículo en Inglés | MEDLINE | ID: mdl-29119516

RESUMEN

DNP (dynamic nuclear polarization)-enhanced solid-state NMR is employed to directly detect protein-DNA and protein-ATP interactions and identify the residue type establishing the intermolecular contacts. While conventional solid-state NMR can detect protein-DNA interactions in large oligomeric protein assemblies in favorable cases, it typically suffers from low signal-to-noise ratios. We show here, for the oligomeric DnaB helicase from Helicobacter pylori complexed with ADP and single-stranded DNA, that this limitation can be overcome by using DNP-enhanced spectroscopy. Interactions are established by DNP-enhanced 31P-13C polarization-transfer experiments followed by the recording of a 2D 13C-13C correlation experiment. The NMR spectra were obtained in less than 2 days and allowed the identification of residues of the motor protein involved in nucleotide binding.


Asunto(s)
Proteínas Motoras Moleculares/química , Resonancia Magnética Nuclear Biomolecular/métodos , Nucleótidos/metabolismo , Proteínas/metabolismo , Adenosina Difosfato , Adenosina Trifosfato , Sitios de Unión , Isótopos de Carbono , ADN de Cadena Simple , AdnB Helicasas , Helicobacter/enzimología , Fósforo
12.
Phys Chem Chem Phys ; 19(29): 19196-19204, 2017 Jul 26.
Artículo en Inglés | MEDLINE | ID: mdl-28702550

RESUMEN

Dissolution DNP has become an important method to generate highly polarized substrates such as pyruvic acid for in vivo imaging and localized spectroscopy. In a quest to further increase the polarization levels, which is important for in vivo MRI employing 13C detection, we describe the design and implementation of a new DNP polarizer that is suitable for dissolution operation at 7 T static magnetic field and a temperature of 1.4 K. We describe all important sample preparation steps and experimental details necessary to optimize trityl based samples for use in our polarizer at this higher field. In [1-13C]-pyruvic acid polarization levels of about 56% are achieved, compared to typical polarization levels of about 35-45% at a standard field of 3.4 T. At the same time, the polarization build-up time increases significantly from about 670 s at 3.4 T to around 1300-1900 s at 7 T, depending on the trityl derivate used. We also investigate the effect of adding trace amounts of Gd3+ to the samples. While one trityl compound does not exhibit any benefit, the other profits significantly, boosting achievable polarization by 6%.

13.
Phys Chem Chem Phys ; 16(39): 21407-16, 2014 Oct 21.
Artículo en Inglés | MEDLINE | ID: mdl-25182534

RESUMEN

Dynamic nuclear polarization (DNP) in combination with subsequent dissolution of the sample allows the detection of low-γ nuclei in the solution state with a signal gain of up to tens of thousand times compared to experiments starting from Boltzmann conditions. The long polarization build-up times of typically more than one hour are a drawback of this technique. The combination of dissolution DNP with cross-polarization (CP) in the solid state was shown to have the potential to overcome this disadvantage. In this article we discuss the cross-polarization step under dissolution DNP conditions in more detail. We show that adiabatic half-passage pulses allow us to enhance the CP efficiency in power-limited DNP probes. As a low-power alternative to Hartmann-Hahn CP we also demonstrate the applicability of frequency-swept de- and re-magnetization pulses for polarization transfer via dipolar order. We investigate the implications and restrictions of the common solid-state DNP mechanisms to the DNP-CP technique and apply a spin-thermodynamic model based on the thermal-mixing mechanism. The model allows us to investigate the dynamics of the polarization levels in a system with two nuclear Zeeman reservoirs and explains the enhanced DNP efficiency upon solvent deuteration within a spin-thermodynamic picture.


Asunto(s)
Termodinámica , Óxidos N-Cíclicos/química , Espectroscopía de Resonancia Magnética , Microondas , Urea/química
14.
J Magn Reson ; 214(1): 166-74, 2012 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-22142831

RESUMEN

We describe the design and initial performance results of a multi-sample dissolution dynamic-nuclear-polarization (DNP) polarizer based on a Helium-temperature NMR cryostat for use in a wide-bore NMR magnet with a room-temperature bore. The system is designed to accommodate up to six samples in a revolver-style sample changer that allows changing samples at liquid-Helium temperature and at pressures ranging from ambient pressure down to 1 mbar. The multi-sample setup is motivated by the desire to do repetitive in vivo measurements and to characterize the DNP process by investigating samples of different chemical composition. The system can be loaded with up to six samples simultaneously to reduce sample loading and unloading. Therefore, series of experiments can be carried out faster and more reliably. The DNP probe contains an oversized microwave cavity and includes EPR and NMR capabilities for monitoring the DNP process. In the solid state, DNP enhancements corresponding to ∼45% polarization for [1-(13)C]pyruvic acid with a trityl radical have been measured. In the initial liquid-state acquisition experiments described here, the polarization was found to be ∼13%, corresponding to an enhancement factor exceeding 16,000 relative to thermal polarization at 9.4 T and ambient temperature.


Asunto(s)
Helio/química , Espectroscopía de Resonancia Magnética/instrumentación , Microondas , Manejo de Especímenes/instrumentación , Diseño de Equipo , Análisis de Falla de Equipo , Tamaño de la Muestra
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