Your browser doesn't support javascript.
loading
Mostrar: 20 | 50 | 100
Resultados 1 - 20 de 42
Filtrar
1.
Clin Exp Allergy ; 48(3): 297-305, 2018 03.
Artículo en Inglés | MEDLINE | ID: mdl-29168291

RESUMEN

BACKGROUND: Genetic studies of eczema have identified many genes, which explain only 14% of the heritability. Missing heritability may be partly due to ignored gene-gene (G-G) interactions. OBJECTIVE: Our aim was to detect new interacting genes involved in eczema. METHODS: The search for G-G interaction in eczema was conducted using a two-step approach, which included as a first step, a biological selection of genes, which are involved either in the skin or epidermis development or in the collagen metabolism, and as a second step, an interaction analysis of the selected genes. Analyses were carried out at both SNP and gene levels in three asthma-ascertained family samples: the discovery dataset of 388 EGEA (Epidemiological study on the Genetics and Environment of Asthma) families and the two replication datasets of 253 SLSJ (Saguenay-Lac-Saint-Jean) families and 207 MRCA (Medical Research Council) families. RESULTS: One pair of SNPs, rs2287807 in COL5A3 and rs17576 in MMP9, that were detected in EGEA at P ≤ 10-5 showed significant interaction by meta-analysis of EGEA, SLSJ and MRCA samples (P = 1.1 × 10-8 under the significant threshold of 10-7 ). Gene-based analysis confirmed strong interaction between COL5A3 and MMP9 (P = 4 × 10-8 under the significant threshold of 4 × 10-6 ) by meta-analysis of the three datasets. When stratifying the data on asthma, this interaction remained in both groups of asthmatic and non-asthmatic subjects. CONCLUSION: This study identified significant interaction between two new genes, COL5A3 and MMP9, which may be accounted for by a degradation of COL5A3 by MMP9 influencing eczema susceptibility. Further confirmation of this interaction as well as functional studies is needed to better understand the role of these genes in eczema.


Asunto(s)
Colágeno Tipo V/genética , Eccema/genética , Epistasis Genética/genética , Predisposición Genética a la Enfermedad/genética , Metaloproteinasa 9 de la Matriz/genética , Adulto , Anciano , Femenino , Genotipo , Humanos , Masculino , Persona de Mediana Edad , Polimorfismo de Nucleótido Simple
2.
Sci Rep ; 7(1): 938, 2017 04 20.
Artículo en Inglés | MEDLINE | ID: mdl-28428554

RESUMEN

The number of genetic factors associated with asthma remains limited. To identify new genes with an undetected individual effect but collectively influencing asthma risk, we conducted a network-assisted analysis that integrates outcomes of genome-wide association studies (GWAS) and protein-protein interaction networks. We used two GWAS datasets, each consisting of the results of a meta-analysis of nine childhood-onset asthma GWASs (5,924 and 6,043 subjects, respectively). We developed a novel method to compute gene-level P-values (fastCGP), and proposed a parallel dense-module search and cross-selection strategy to identify an asthma-associated gene module. We identified a module of 91 genes with a significant joint effect on childhood-onset asthma (P < 10-5). This module contained a core subnetwork including genes at known asthma loci and five peripheral subnetworks including relevant candidates. Notably, the core genes were connected to APP (encoding amyloid beta precursor protein), a major player in Alzheimer's disease that is known to have immune and inflammatory components. Functional analysis of the module genes revealed four gene clusters involved in innate and adaptive immunity, chemotaxis, cell-adhesion and transcription regulation, which are biologically meaningful processes that may underlie asthma risk. Our findings provide important clues for future research into asthma aetiology.


Asunto(s)
Asma/genética , Redes Reguladoras de Genes , Mapas de Interacción de Proteínas , Edad de Inicio , Precursor de Proteína beta-Amiloide/genética , Asma/patología , Niño , Estudio de Asociación del Genoma Completo , Humanos
3.
J Affect Disord ; 188: 101-6, 2015 Dec 01.
Artículo en Inglés | MEDLINE | ID: mdl-26349599

RESUMEN

BACKGROUND: Emotional reactivity has been proposed as a relevant intermediate phenotype of bipolar disorder (BD). Our goal was to identify genetic factors underlying emotional reactivity in a sample of bipolar patients. METHODS: Affect intensity (a proxy measure of emotional reactivity) was measured in a sample of 281 euthymic patients meeting DSM-IV criteria for BD. We use a validated dimensional tool, the 40-item self-report Affect Intensity Measure scale developed by Larsen and Diener. Patients with BD were genotyped for 475. 740 SNPs (using Illumina HumanHap550 Beadchips or HumanHap610 Quad chip). Association was investigated with a general mixed regression model of the continuous trait against genotypes, including gender as covariate. RESULTS: Four regions (1p31.3, 3q13.11, 11p15.1 and 11q14.4) with a p-value lower or equal to 5×10(-6) were identified. In these regions, the joint effect of the four variants accounted for 24.5% of the variance of AIM score. Epistasis analysis did not detect interaction between these variants. In the 11p15.1 region, the rs10766743 located in the intron of the NELL1 gene remained significant after correction for multiple testing (p=2×10(-7)). CONCLUSIONS: These findings illustrate that focusing on quantitative intermediate phenotypes can facilitate the identification of genetic susceptibility variants in BD.


Asunto(s)
Trastorno Bipolar/genética , Trastorno Bipolar/psicología , Predisposición Genética a la Enfermedad , Genotipo , Polimorfismo de Nucleótido Simple , Adulto , Femenino , Estudios de Asociación Genética , Variación Genética , Humanos , Masculino , Persona de Mediana Edad , Fenotipo
4.
Rev Mal Respir ; 32(8): 822-40, 2015 Oct.
Artículo en Francés | MEDLINE | ID: mdl-25794998

RESUMEN

INTRODUCTION AND METHODS: The EGEA study (epidemiological study on the genetics and environment of asthma, bronchial hyperresponsiveness and atopy), which combines a case-control and a family-based study of asthma case (n=2120 subjects) with three surveys over 20 years, aims to identify environmental and genetic factors associated with asthma and asthma-related phenotypes. We summarize the results of the phenotypic characterization and the investigation of environmental and genetic factors of asthma and asthma-related phenotypes obtained since 2007 in the EGEA study (42 articles). RESULTS: Both epidemiological and genetic results confirm the heterogeneity of asthma. These results strengthen the role of the age of disease onset, the allergic status and the level of disease activity in the identification of the different phenotypes of asthma. The deleterious role of active smoking, exposure to air pollution, occupational asthmogenic agents and cleaning products on the prevalence and/or activity of asthma has been confirmed. Accounting for gene-environment interactions allowed the identification of new genetic factors underlying asthma and asthma-related traits and better understanding of their mode of action. CONCLUSION: The EGEA study is contributing to the advances in respiratory research at the international level. The new phenotypic, environmental and biological data available in EGEA study will help characterizing the long-term evolution of asthma and the factors associated to this evolution.


Asunto(s)
Asma/etiología , Hiperreactividad Bronquial/etiología , Interacción Gen-Ambiente , Hipersensibilidad Inmediata/etiología , Adolescente , Adulto , Anciano , Contaminación del Aire/efectos adversos , Asma/epidemiología , Asma/genética , Hiperreactividad Bronquial/epidemiología , Hiperreactividad Bronquial/genética , Estudios de Casos y Controles , Niño , Exposición a Riesgos Ambientales , Salud de la Familia , Francia , Estudios de Asociación Genética , Heterogeneidad Genética , Predisposición Genética a la Enfermedad , Encuestas Epidemiológicas , Humanos , Hipersensibilidad Inmediata/epidemiología , Hipersensibilidad Inmediata/genética , Masculino , Persona de Mediana Edad , Exposición Profesional , Fenotipo , Polimorfismo de Nucleótido Simple , Factores de Riesgo , Fumar/efectos adversos , Contaminación por Humo de Tabaco/efectos adversos
5.
Clin Exp Allergy ; 45(4): 797-806, 2015 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-25431337

RESUMEN

BACKGROUND: Exhaled nitric oxide (FeNO) is a biomarker for eosinophilic inflammation in the airways and for responsiveness to corticosteroids in asthmatics. OBJECTIVE: We sought to identify in adults the genetic determinants of fractional exhaled nitric oxide (FeNO) levels and to assess whether environmental and disease-related factors influence these associations. METHODS: We performed a genome-wide association study of FeNO through meta-analysis of two independent discovery samples of European ancestry: the outbred EGEA study (French Epidemiological study on the Genetics and Environment of Asthma, N = 610 adults) and the Hutterites (N = 601 adults), a founder population living on communal farms. Replication of main findings was assessed in adults from an isolated village in Sardinia (Talana study, N = 450). We then investigated the influence of asthma, atopy and tobacco smoke exposure on these genetic associations, and whether they were also associated with FeNO values in children of the EAGLE (EArly Genetics & Lifecourse Epidemiology, N = 8858) consortium. RESULTS: We detected a common variant in RAB27A (rs2444043) associated with FeNO that reached the genome-wide significant level (P = 1.6 × 10(-7) ) in the combined discovery and replication adult data sets. This SNP belongs to member of RAS oncogene family (RAB27A) and was associated with an expression quantitative trait locus for RAB27A in lymphoblastoid cell lines from asthmatics. A second suggestive locus (rs2194437, P = 8.9 × 10(-7) ) located nearby the sodium/calcium exchanger 1 (SLC8A1) was mainly detected in atopic subjects and influenced by inhaled corticosteroid use. These two loci were not associated with childhood FeNO values. CONCLUSIONS AND CLINICAL RELEVANCE: This study identified a common variant located in RAB27A gene influencing FeNO levels specifically in adults and with a biological relevance to the regulation of FeNO levels. This study provides new insight into the biological mechanisms underlying FeNO levels in adults.


Asunto(s)
Estudios de Asociación Genética , Variación Genética , Óxido Nítrico , Proteínas de Unión al GTP rab/genética , Adulto , Alelos , Asma/genética , Asma/inmunología , Asma/metabolismo , Biomarcadores , Mapeo Cromosómico , Espiración , Femenino , Estudio de Asociación del Genoma Completo , Genotipo , Humanos , Masculino , Metaanálisis como Asunto , Persona de Mediana Edad , Fenotipo , Polimorfismo de Nucleótido Simple , Sitios de Carácter Cuantitativo , Factores de Riesgo , Adulto Joven , Proteínas rab27 de Unión a GTP
6.
Genes Immun ; 10(6): 559-65, 2009 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-19536153

RESUMEN

Sex differences in asthma-associated phenotypes are well known but the genetic factors that may account for these differences have received little attention. This study aimed to characterize sex-specific and pleiotropic genetic factors underlying four quantitative phenotypes involved in the main asthma physiopathological pathways: immunoglobulin E levels, a measure of polysensitization (SPTQ), eosinophil counts and a measure of lung function FEV(1)/H(2) (forced expiratory volume in one second divided by height square). Sex-stratified univariate and bivariate linkage analyses were conducted in 295 families from the Epidemiological study on the Genetics and Environment of Asthma study. We found genome-wide significant evidence for a male-specific pleiotropic QTL (quantitative trait loci) on 5q31 (P=7 x 10(-9)) influencing both FEV(1)/H(2) and SPTQ and for a female-specific pleiotropic QTL on 11q23 underlying SPTQ and immunoglobulin E (P=2 x 10(-5)). Three other sex-specific regions of linkage were detected for eosinophil: 4q24 and 22q13 in females, and 3p25 in males. Further, bivariate association analysis of FEV(1)/H(2) and SPTQ with 5q31 candidate genes in males showed a significant association with two single-nucleotide polymorphisms within IL9 gene, rs2069885 and rs2069882 (P=0.02 and P=0.002, respectively, after Bonferroni's correction). This study underlies the importance of taking into account complex mechanisms, such as heterogeneity according to sex and pleiotropy to unravel the genes involved in asthma phenotypes.


Asunto(s)
Asma/genética , Eosinófilos/patología , Ligamiento Genético , Inmunoglobulina E/sangre , Interleucina-9/genética , Pulmón/fisiología , Polimorfismo de Nucleótido Simple/genética , Adolescente , Asma/sangre , Hiperreactividad Bronquial , Recuento de Células , Niño , Mapeo Cromosómico , Cromosomas Humanos Par 11/genética , Cromosomas Humanos Par 22/genética , Cromosomas Humanos Par 4/genética , Femenino , Volumen Espiratorio Forzado/genética , Genoma Humano , Estudio de Asociación del Genoma Completo , Genotipo , Humanos , Masculino , Repeticiones de Microsatélite , Fenotipo , Sitios de Carácter Cuantitativo , Pruebas de Función Respiratoria , Factores Sexuales
7.
Eur Respir J ; 30(2): 253-9, 2007 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-17459892

RESUMEN

There is ongoing debate as to how asthma should be defined in order to forward understanding of the underlying mechanisms. The aim of the present study was to build quantitative scores of asthma and asthma severity and to assess whether refinement of disease phenotypes can facilitate the identification of chromosomal regions harbouring susceptibility genes. A genome-wide linkage scan was conducted in 110 families with at least two asthmatic siblings (n = 508) from the French Epidemiological study on the Genetics and Environment of Asthma, bronchial hyperresponsiveness and atopy (EGEA). The phenotypes studied were an asthma severity score (assessed among asthmatics by combining clinical data and treatment), forced expiratory volume in one second (FEV(1)) and an asthma score (including both asthmatics and nonasthmatics and representing the whole disease spectrum). This analysis showed genome-wide suggestive evidence of linkage of the asthma score to 18p11, a novel region undetected in a previous screen of dichotomous asthma. There was potential linkage of 2p23 to asthma severity score and of three regions (1p36, 2q36 and 6q14) to FEV(1). Moreover, FEV(1) appeared to have no genetic determinant in common with asthma severity and asthma scores. Asthma and asthma severity quantitative scores revealed new regions of linkage and thus provide support for considering these phenotypes in future genetic studies.


Asunto(s)
Asma/genética , Asma/fisiopatología , Ligamiento Genético , Índice de Severidad de la Enfermedad , Adolescente , Adulto , Niño , Preescolar , Femenino , Francia/epidemiología , Marcadores Genéticos , Genoma Humano , Genotipo , Humanos , Escala de Lod , Masculino , Fenotipo , Encuestas y Cuestionarios
8.
Genes Immun ; 6(2): 95-102, 2005 Mar.
Artículo en Inglés | MEDLINE | ID: mdl-15674395

RESUMEN

In the sample of 295 French EGEA families with at least one asthmatic subject, a genome screen was conducted to identify potential linkage regions specific either to allergic rhinitis (AR) or to asthma as well as those shared by the two diseases. Two binary rhinitis phenotypes based on (1) diagnosis (ARbin1) and (2) symptoms (ARbin2) and a categorical ordered trait (ARcat) were considered. Asthma phenotype was based on answers to a standardized questionnaire plus the presence of bronchial hyper-responsiveness. Linkage analyses were conducted using the maximum likelihood binomial (MLB) method. These analyses provided potential evidence for linkage to three regions in the whole sample: 1p31 for the phenotype defined by ARbin2 plus asthma (P=0.00016), 2q32 for ARbin2 (P=0.00016) and 3p24-p14 for ARcat (P=0.001). Two other regions were detected in the subset of 185 families with at most one asthmatic sib: 9p22 and 9q22-q34 for ARbin1 (P=0.001 and 0.0007, respectively). No region showed evidence for linkage to asthma without being also linked to AR. While 1p31 may contain a genetic determinant common to asthma and AR, 2q32, 3p24-p14, 9p22 and 9q22-q34 are more likely to harbor genetic factors specific to AR.


Asunto(s)
Asma/genética , Cromosomas Humanos/genética , Ligamiento Genético , Predisposición Genética a la Enfermedad , Genoma Humano , Rinitis/genética , Francia , Marcadores Genéticos , Pruebas Genéticas , Humanos , Fenotipo
9.
Eur J Hum Genet ; 11(8): 590-6, 2003 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-12891379

RESUMEN

Using the sample of 107 families with at least two asthmatic siblings, as part of the EGEA study, we have investigated linkage to asthma (or atopy) and genetic heterogeneity according to the presence/absence of atopy (or asthma) using two approaches: (1) the triangle test statistic (TTS), which considers the identical by descent (IBD) distribution among affected sib-pairs discordant for another associated phenotype (eg asthmatic sib-pairs discordant for atopy) and (2) the predivided sample test (PST), which compares the IBD distribution of marker alleles between affected sib-pairs concordant and discordant for the associated phenotype. Two regions, 8p and 12q, already reported to be linked to both asthma and atopy, were examined here. A total of 20 asthmatic sib-pairs discordant for atopy and 24 atopic pairs discordant for asthma were analyzed by both TTS and PST methods and 83 pairs with atopic asthma by PST. Some evidence for linkage was observed for two markers in the 8p23.3-p23.2 region; D8S504 for asthma with genetic heterogeneity according to the presence/absence of atopy and D8S503 for atopy with genetic heterogeneity according to the presence/absence of asthma. In the 12q14.2-q21.33 region, there was also some evidence of linkage to two markers, D12S83 and D12S95, for atopy and asthma, respectively, with genetic heterogeneity according to the presence/absence of the associated trait. Provided the small distance between the two markers on either 8p (16 cM) or 12q (21 cM), it is unclear whether one or two genetic factors are involved in either region.


Asunto(s)
Asma/genética , Cromosomas Humanos Par 12 , Cromosomas Humanos Par 8 , Heterogeneidad Genética , Hipersensibilidad Inmediata/genética , Mapeo Cromosómico , Femenino , Francia , Ligamiento Genético , Marcadores Genéticos , Humanos , Masculino , Estadística como Asunto/métodos
10.
Genet Epidemiol ; 25(1): 73-9, 2003 Jul.
Artículo en Inglés | MEDLINE | ID: mdl-12813728

RESUMEN

The aim of this study was to compare, under different models of gene-environment (G x E) interaction, the power to detect linkage and G x E interaction of different tests using affected sib-pairs. Methods considered were: 1) the maximum likelihood lod-score (MLS), based on the distribution of parental alleles identical by descent (IBD) in affected sibs; 2) the sum of the MLS (sMLS) calculated in affected sib-pairs with 2, 1, or 0 sibs exposed; 3) the predivided sample test (PST), which compares the IBD distribution between affected sib-pairs with 2, 1, or 0 sibs exposed; 4) the triangle test statistic (TTS), which uses the IBD distribution among discordant affected sib-pairs (one exposed, one unexposed); and 5) the mean interaction test (MIT), based on the regression of the proportion of alleles shared IBD among affected sib-pairs on the exposure among sib-pairs. The MLS, sMLS, and MIT allow detection of linkage. However, the sMLS and MIT account for a possible G x E interaction without testing it. In contrast, the PST and the TTS allow detection of both linkage and G x E interaction. Results showed that when exposure cancels the effect of the gene, or changes the direction of this effect (i.e., the protective allele becomes the risk allele), the PST, sMLS, and MIT may provide, under some models, greater power to detect linkage than the MLS. Under models where exposure changes the direction of the effect of the gene, the TTS test may also be more powerful than the other tests accounting for G x E interaction. Under the other models, the MLS remains the most powerful test to detect linkage. However, only the PST and TTS allow the detection of G x E interaction.


Asunto(s)
Ambiente , Ligamiento Genético , Predisposición Genética a la Enfermedad/genética , Modelos Genéticos , Hermanos , Predisposición Genética a la Enfermedad/etiología , Humanos
11.
Rev Mal Respir ; 19(3): 323-33, 2002 Jun.
Artículo en Francés | MEDLINE | ID: mdl-12166414

RESUMEN

This paper illustrates the principles of construction and validation of an epidemiological questionnaire by using various aspects of the questionnaire prepared for the Epidemiological Study of the Genetic and Environmental Factors in Asthma, Bronchial Hyper-responsiveness and Atopy (EGEA). Standardised international questionnaires (for adults and children) were adapted and augmented for the requirements of the study. New areas in relation to international epidemiological studies are described (detailed descriptions of asthma and allergic rhinitis, trigger factors exposure tovarious environmental factors and family history). Various aspects of validation are discussed: the acceptibility by the study of missing data in the description of asthmatic symptoms, the construct validity for a score for allergic rhinitis, the reliability of a new self-administered questionnaire for perceived hyper responsiveness to various stimuli and the validity of reported family history using information obtained from family members. Some of these elements could be used in the context of other clinical and epidemiological studies. The complete questionnaire, together with the source of the questions, instructions for interviewers and the method of coding are presented in an appendix available on the internet (http://www.splf.org/bbo/revues-articles/RMR/depotElectronique/2001-110_Kauffmann/Kauffmann2002.htm) which supplements the printed paper.


Asunto(s)
Asma/epidemiología , Hiperreactividad Bronquial/epidemiología , Rinitis Alérgica Perenne/epidemiología , Encuestas y Cuestionarios , Asma/genética , Hiperreactividad Bronquial/genética , Estudios Epidemiológicos , Humanos , Rinitis Alérgica Perenne/genética , Índice de Severidad de la Enfermedad
12.
Rev Mal Respir ; 19(1): 63-72, 2002 Feb.
Artículo en Francés | MEDLINE | ID: mdl-17546815

RESUMEN

The French co-operative epidemiological study EGEA realised in 1991/95 combines a case control study and a study of the families of asthmatic cases. A synthesis of the results already obtained is presented. Smoking was related to IgE, even in asthmatics and was clearly related to the clinical severity of asthma, an aspect insufficiently taken into account. The relationships of occupational exposures to asthma have been assessed using a job exposure matrix. Segregation analyses on IgE have shown, after correction for the mode of ascertainment, the existence of a dominant major gene and familial residual correlation. A systematic genome screen realised in families with 2 asthmatic siblings showed linkage of various regions in the genome implicated to asthma or related phenotypes (1p, 11p, 11q, 12q, 13q, 17q, 19q), coherent with genome screens realised in other studies. Regarding candidate genes, no association was evidenced between asthma and the AF508 mutation of the cystic fibrosis gene. The analysis is still in progress by studies on the heterogeneity of asthma with refined genetic studies and by searching to integrate results regarding environmental and genetic factors and studying their interactions.


Asunto(s)
Asma/epidemiología , Asma/etiología , Adolescente , Adulto , Anciano , Estudios de Casos y Controles , Niño , Ambiente , Femenino , Francia/epidemiología , Predisposición Genética a la Enfermedad , Humanos , Masculino , Persona de Mediana Edad , Fenotipo , Índice de Severidad de la Enfermedad
13.
Rev Epidemiol Sante Publique ; 49(4): 343-56, 2001 Sep.
Artículo en Francés | MEDLINE | ID: mdl-11567201

RESUMEN

BACKGROUND: The EGEA study combines a case-control study and a family study to assess genetic and environmental risk factors and their interactions for asthma, bronchial hyperresponsiveness and atopy. Information is scanty regarding potential selection biases, in particular regarding familial ressemblance in epidemiological surveys of this kind. METHODS: Asthmatic probands (adult and paediatric) were recruited in chest clinics of six clinical centres. Controls were mostly population-based (electoral rolls) for adults and recruited in surgery departments for children. RESULTS: The population examined includes 348 nuclear families ascertained by one asthmatic and 416 controls, totalling 1847 subjects (EGEA I) and an additional sample of 40 families ascertained by two asthmatic siblings (EGEA II). Potential biases for the various types of analyses have been studied. Quantification of the consequences of the greater participation of probands with a parental history of asthma shows it does not introduce a major bias in the estimates of familial resemblance. Cases and controls showed a good comparability regarding sex, age, area of residence and familial geographical origin, allowing proper associations studies for environmental and candidate genetic factors. CONCLUSIONS: The case-control component of the study will allow to perform studies on environmental factors and association studies for various genetic polymorphisms. Using the family base collected, segregation and genetic linkage/association analyses with DNA markers may be performed.


Asunto(s)
Asma/epidemiología , Asma/genética , Hiperreactividad Bronquial/epidemiología , Hiperreactividad Bronquial/genética , Exposición a Riesgos Ambientales/efectos adversos , Hipersensibilidad Inmediata/epidemiología , Hipersensibilidad Inmediata/genética , Adulto , Distribución por Edad , Estudios de Casos y Controles , Niño , Mapeo Cromosómico/métodos , Segregación Cromosómica/genética , Protocolos Clínicos , Femenino , Francia/epidemiología , Humanos , Masculino , Persona de Mediana Edad , Selección de Paciente , Linaje , Polimorfismo Genético/genética , Vigilancia de la Población , Características de la Residencia/estadística & datos numéricos , Factores de Riesgo , Sesgo de Selección , Distribución por Sexo , Encuestas y Cuestionarios
14.
Eur J Hum Genet ; 9(11): 867-72, 2001 Nov.
Artículo en Inglés | MEDLINE | ID: mdl-11781705

RESUMEN

It is generally believed that an early age at the onset of disease is associated with a stronger genetic component. Our aim here was to investigate both linkage and genetic heterogeneity of asthma, the latter corresponding to different genotype relative risks of a putative linked gene according to age at onset of asthma. This analysis was conducted in 107 French EGEA families with at least two asthmatic siblings, considering 157 markers that were part of our previous genome screen, using the TTS (the Triangle Test Statistic) which has been developed to detect both linkage and intra-sibpair genetic heterogeneity. This test has been applied to 38 asthmatic sib-pairs discordant for age at the onset of asthma. To confirm the existence of genetic heterogeneity, we also used the predivided sample test (PST) which compares the IBD (identity by descent) distribution of marker alleles between asthmatic sib-pairs concordant (67) and discordant (38) for the age at onset. The cutoff point used for the age at onset was 4 years, the median age at onset in our sample of asthmatic sibs. Linkage and genetic heterogeneity for a region located on chromosome 7q (at 109 cM from pter) were indicated by both tests, TTS (P=0.005, P>0.5 after correction for multiple testing) and PST (P=0.0001, 0.015 after correction). These results suggest a genetic factor on 7q involved in asthma with genotype relative risks differing according to age at onset of disease.


Asunto(s)
Asma/genética , Cromosomas Humanos Par 7/genética , Edad de Inicio , ADN/genética , Salud de la Familia , Femenino , Heterogeneidad Genética , Ligamiento Genético , Genotipo , Humanos , Masculino , Repeticiones de Microsatélite , Fenotipo , Estadística como Asunto
15.
Genet Epidemiol ; 21 Suppl 1: S192-7, 2001.
Artículo en Inglés | MEDLINE | ID: mdl-11793668

RESUMEN

The purpose of our study was to detect genetic heterogeneity (i.e., different genotype relative risks of genetic factor) between atopic and non-atopic asthma and between atopy associated or independent of asthma. Genetic heterogeneity was tested in the Caucasian Collaborative Study on the Genetics of Asthma families using the TTS (triangle test statistic) and the predivided sample test. The TTS was proposed to detect both linkage and intra-sib-pair genetic heterogeneity; such heterogeneity may exist if the sibs differ for a factor on which the penetrances of the putative linked gene depend. The TTS has been applied to asthmatic pairs discordant for atopy and atopic sib pairs discordant for asthma. To confirm genetic heterogeneity detected by the TTS, the predivided sample test was also applied among concordant and discordant sib pairs. The analyses detected a genetic factor on chromosome 8p that could be involved in atopy with different genotype relative risks according to whether asthma is present. This would suggest a pleiotropic effect of this genetic factor in asthma and atopy. Two other regions located on chromosomes 8q and 20p were detected for genetic heterogeneity with asthma and atopy, respectively, but the factor of heterogeneity could be independent from the presence of atopy or asthma, respectively. It could be a characteristic of the disease such as the severity or the presence of an environmental factor.


Asunto(s)
Asma/genética , Heterogeneidad Genética , Hipersensibilidad Respiratoria/genética , Adulto , Alelos , Asma/epidemiología , Niño , Mapeo Cromosómico , Cromosomas Humanos Par 20 , Cromosomas Humanos Par 8 , Femenino , Frecuencia de los Genes , Marcadores Genéticos/genética , Genética de Población , Humanos , Masculino , Hipersensibilidad Respiratoria/epidemiología , Factores de Riesgo , Estados Unidos
16.
Genet Epidemiol ; 21 Suppl 1: S44-8, 2001.
Artículo en Inglés | MEDLINE | ID: mdl-11793715

RESUMEN

Three different samples of families with asthmatic patients, the German data set and the CSGA data set subdivided into Caucasian and African American groups, were analyzed using the maximum lod score statistic. Although different scores were obtained in each sample, the Wald's likelihood homogeneity test did not reveal any significant genetic heterogeneity. This may be due to the very large variance of the model-free linkage statistics.


Asunto(s)
Asma/genética , Heterogeneidad Genética , Genoma , Adulto , Alelos , Asma/epidemiología , Asma/etnología , Población Negra/genética , Niño , Mapeo Cromosómico , Frecuencia de los Genes , Marcadores Genéticos/genética , Genética de Población , Alemania , Humanos , Escala de Lod , Modelos Genéticos , Población Blanca/genética
17.
Am J Respir Crit Care Med ; 162(5): 1812-8, 2000 Nov.
Artículo en Inglés | MEDLINE | ID: mdl-11069818

RESUMEN

A genome-wide search was conducted in 107 nuclear families with at least two siblings with asthma, as part of the French EGEA study. A two-stage analysis strategy was applied to the 107 families divided into two independent subsets of 46 and 61 families, where all regions detected in the first set of families were tested for replication in the second set. In addition, all regions reported by published genome scans in different populations were examined in the total sample. A total of 254 markers were typed in the first set of families and 70% of them in the second set. Linkage was investigated by model-free methods for asthma and four asthma-related phenotypes: bronchial responsiveness (BR), skin test response, total immunoglobulin E (IgE) levels, and eosinophil count. The two-stage analysis led to the detection of three regions: 11p13 for IgE, 12q24 for eosinophils, and 17q12-21 for asthma and skin tests. Among the regions reported by published genome screens, seven were found in the 107 French EGEA families: three being already detected by the two-stage analysis, 11p13 (p = 0.005), 12q24 (p = 0.0008), and 17q12-21 (p = 0.001), and four additional ones, 1p31 (p = 0.005) for asthma, 11q13 (p = 0.006) for IgE, 13q31 (p = 0.001) for eosinophils, and 19q13 (p = 0.02) for BR.


Asunto(s)
Asma/genética , Genoma , Fenotipo , Adolescente , Asma/inmunología , Asma/fisiopatología , Hiperreactividad Bronquial , Niño , Eosinófilos , Femenino , Francia , Ligamiento Genético , Marcadores Genéticos , Genotipo , Humanos , Inmunoglobulina E/análisis , Recuento de Leucocitos , Masculino , Repeticiones de Microsatélite , Pruebas Cutáneas
18.
Genet Epidemiol ; 18(2): 128-42, 2000 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-10642426

RESUMEN

The main objective of this study was to search for a major gene controlling total serum immunoglobulin E (IgE) levels, an intermediate phenotype for asthma and allergy. We studied 335 French nuclear families of the EGEA study (Epidemiological study of the Genetics and Environment of Asthma), ascertained through asthmatic probands (123 are parents in the family, 212 children). Segregation analyses were performed by regressive models, which can take into account a major gene effect, various sources of familial covariation (genetic and/or environmental) as well as measured risk factors (i.e. , age, sex, smoking habits). Different strategies were considered to account for the mode of ascertainment of the families through a correlated trait (asthma): the ascertainment mode was either ignored (strategy A) or taken into account by adjusting IgE levels for the position in the family, i.e., probands, blood relatives, spouses (strategy B) or excluding the asthmatic children-probands and computing the likelihood of each family conditionally on parents' IgE levels (strategy C). Whereas a major gene effect could not be detected with strategy A, strategies B and C showed evidence for the transmission of a dominant major gene for high IgE levels, which was more significant with strategy B. This gene does not interact with any of the covariates and is responsible for approximately 15% of IgE variation (the allele frequency is 0.65).


Asunto(s)
Asma/genética , Inmunoglobulina E/análisis , Adolescente , Femenino , Genes Dominantes , Variación Genética , Humanos , Masculino , Factores de Riesgo
19.
Ann Hum Genet ; 64(Pt 5): 433-42, 2000 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-11281281

RESUMEN

The proportions of affected sibs sharing 2, 1 or 0 identical by descent parental marker alleles have been shown to conform to the 'triangle constraints' (Suarez, 1978; Holmans, 1993). It has also been shown (Dudoit & Speed, 1999) that the constraints are verified provided certain assumptions hold. In this study we explore a realistic situation in which the constraints fail due to the presence of a factor in which the sibs differ, a factor on which penetrance depends. This factor may be a characteristic of the trait (severe vs. mild form), or the presence/absence of an associated trait or an environmental factor. We show that under such situations, using the triangle constraints may lead to important loss of power to detect linkage by the MLS test. We propose here an alternative approach in order to detect both linkage and heterogeneity.


Asunto(s)
Heterogeneidad Genética , Ligamiento Genético , Modelos Genéticos , Alelos , Marcadores Genéticos , Predisposición Genética a la Enfermedad , Pruebas Genéticas , Variación Genética , Genotipo , Humanos , Funciones de Verosimilitud , Escala de Lod , Modelos Estadísticos , Núcleo Familiar , Fenotipo , Polimorfismo Genético
20.
Genet Epidemiol ; 17 Suppl 1: S685-9, 1999.
Artículo en Inglés | MEDLINE | ID: mdl-10597514

RESUMEN

For any genetic model, Holmans showed that the proportions of affected sibs sharing 2, 1, or 0 identical-by-descent parental marker alleles are constrained to belong to a specific triangle. The triangle constraints do not hold when the sib phenotypes are determined by different models. We test the rejection of triangle constraints on affected sib pairs discordant for severity, to determine whether different models control the severe and mild forms of the disease in the simulated data. With this method we show that a locus on chromosome 5 plays a different role in the two forms of the disease.


Asunto(s)
Ligamiento Genético , Modelos Genéticos , Marcadores Genéticos , Predisposición Genética a la Enfermedad , Pruebas Genéticas , Humanos , Funciones de Verosimilitud , Escala de Lod , Modelos Estadísticos , Núcleo Familiar , Fenotipo , Polimorfismo Genético
SELECCIÓN DE REFERENCIAS
DETALLE DE LA BÚSQUEDA