AMAZONIA CAMTRAP: A data set of mammal, bird, and reptile species recorded with camera traps in the Amazon forest.

The Amazon forest has the highest biodiversity on Earth. However, information on Amazonian vertebrate diversity is still deficient and scattered across the published, peer-reviewed, and gray literature and in unpublished raw data. Camera traps are an effective non-invasive method of surveying vertebrates, applicable to different scales of time and space. In this study, we organized and standardized camera trap records from different Amazon regions to compile the most extensive data set of inventories of mammal, bird, and reptile species ever assembled for the area. The complete data set comprises 154,123 records of 317 species (185 birds, 119 mammals, and 13 reptiles) gathered from surveys from the Amazonian portion of eight countries (Brazil, Bolivia, Colombia, Ecuador, French Guiana, Peru, Suriname, and Venezuela). The most frequently recorded species per taxa were: mammals: Cuniculus paca (11,907 records); birds: Pauxi tuberosa (3713 records); and reptiles: Tupinambis teguixin (716 records). The information detailed in this data paper opens up opportunities for new ecological studies at different spatial and temporal scales, allowing for a more accurate evaluation of the effects of habitat loss, fragmentation, climate change, and other human-mediated defaunation processes in one of the most important and threatened tropical environments in the world. The data set is not copyright restricted; please cite this data paper when using its data in publications and we also request that researchers and educators inform us of how they are using these data.

Temporal and spatial variation of richness and abundance of the community of birds in the Pantanal wetlands of Nhecolândia(Mato Grosso do Sul, Brazil) / Variación temporal y espacial en la riqueza y abundancia de la comunidad de aves del humedal Pantanal de Nhecolândia (Mato Grosso do Sul, Brazil)

Abstract The Pantanal wetlands represent one of the largest flood plains in the World, with extreme climatic variations between dry and wet seasons. The area shelters a high diversity of habitats, representing the main formations found in this sub-region: grasslands, savannah, forested savannah, riparian forests, bays and salines, and Negro river itself. This habitat variability determines the structure and dynamics of the bird community, because most species are closely related to specific habitats. For this, we studied the abundance of bird species from 2001 to 2004 in a Pantanal area of Fazenda Rio Negro, Aquidauana, Brazil. The abundance was compared among those four consecutive years, seasons (dry and wet), time of the day (morning and afternoon), and also between seven different habitats, in order to determine the variation in distribution patterns and habitats used by birds. For this, we used the linear transect method in each of the seven habitats, and recorded bird abundances to obtain richness. The richness registered in the mosaic of habitats was of 201 species for the savannah, 87 in forested savannah, 116 in the riparian forest, 75 in grasslands, 120 in bays, 92 in the salines and 64 in the Negro river, accounting for 348 species in the Pantanal of Rio Negro. Overall, 98 species of migratory birds were registered. The results highlighted some important issues regarding the total abundance of birds in Nhecolândia: Psittacidae was the most abundant family in the region, with prominence in all environments. Recurvirostridae, a monospecific family, showed expressive abundance due to the dominance of Himantopusmexicanus in the salinas, followed by Ardeidae, Anatidae and Cracidae. Other families with high abundance were Tyrannidae, Columbidae, Thraupidae and Emberizidae, all in predominantly terrestrial environments. Moreover: a) The highest number of specimens was recorded in the morning period and in the dry season, regardless of the habitat; b) there were no differences in abundance in the same habitat along the years, but the abundance was different among habitats. In general, the results indicated that there is a relatively stable bird population in each habitat along the annual cycle, but there were differences in abundance among habitats. Thus, additional studies on food availability in dry and wet seasons should be better explored in the future, either in this region or in other Pantanal regions. This fact could better explain the seasonal dynamics of the richness and abundance of birds in the Pantanal area in general.

Resumen Los humedales del Pantanal representan una de las mayores llanuras de inundación del mundo, con variaciones climáticas extremas entre las estaciones seca y húmeda. La zona alberga una gran diversidad de hábitats, representando las principales formaciones encontradas en esta subregión de humedales del Pantanal: pastizales, sabanas, sabanas boscosas, bosques ribereños, bahías y salinas, y el propio Río Negro. La variabilidad del hábitat es una parte determinante de la estructura y dinámica de la comunidad de aves, ya que la mayoría de las especies están estrechamente relacionadas con hábitats específicos. Estudiamos la abundancia de especies de aves de 2001 a 2004 en la Fazenda Río Negro, Aquidauana, Brasil. La abundancia se comparó entre los cuatro años consecutivos, las estaciones (seca y húmeda), la hora del día (mañana y tarde) y también entre siete hábitats diferentes, para determinar la variación en los patrones de distribución y hábitats utilizados por las aves. Para ello, se utilizó el método de transectos lineales en cada uno de los siete hábitats, y se registraron las abundancias de aves para obtener la riqueza. La riqueza registrada en el mosaico de hábitats fue de 201 especies para la sabana, 87 sabana boscosa, 116 bosque ribereño, 75 en pastizales, 120 en bahías, 92 en salinas y 64 en el río Negro, con 348 especies en el Pantanal de Río Negro. En total, se registraron 98 especies de aves migratorias. Los resultados destacaron algunas cuestiones importantes con respecto a la abundancia total de aves en Nhecolândia: Psittacidae fue la familia más abundante en la región, con prominencia en todos los ambientes. Recurvirostridae, una familia monoespecífica, mostró abundancia significativa debido a la dominancia de Himantopusmexicanus en las salinas, seguido por Ardeidae, Anatidae y Cracidae. Otras familias con gran abundancia fueron: Tyrannidae, Columbidae, Thraupidae y Emberizidae, todas en ambientes predominantemente terrestres. Además: a) Se registró el mayor número de ejemplares en el período de la mañana y en la estación seca, independientemente del hábitat; B) no hubo diferencias en la abundancia en el mismo hábitat a lo largo de los años, pero la abundancia fue diferente entre los hábitats. En general, los resultados indicaron que hay una población de aves relativamente estable en cada hábitat a lo largo del ciclo anual, pero hubo diferencias en la abundancia entre los hábitats.

Profile of Trypanosoma cruzi reactivity in a population at high risk for endemic pemphigus foliaceus (Fogo selvagem).

Fogo selvagem (FS) is an autoimmune bullous disease with pathogenic IgG autoantibodies recognizing desmoglein 1 (Dsg1), a desmosomal glycoprotein. In certain settlements of Brazil, a high prevalence of FS (3%) is reported, suggesting environmental factors as triggers of the autoimmune response. Healthy individuals from endemic areas recognize nonpathogenic epitopes of Dsg1, and exposure to hematophagous insects is a risk factor for FS. Fogo selvagem and Chagas disease share some geographic sites, and anti-Dsg1 has been detected in Chagas patients. Indeterminate Chagas disease was identified in a Brazilian Amerindian population of high risk for FS. In counterpart, none of the FS patients living in the same geographic region showed reactivity against Trypanosoma cruzi. The profile of anti-Dsg1 antibodies showed positive results in 15 of 40 FS sera and in 33 of 150 sera from healthy individuals from endemic FS sites, and no cross-reactivity between Chagas disease and FS was observed.

An insight into the sialotranscriptome of Triatoma matogrossensis, a kissing bug associated with fogo selvagem in South America.

Triatoma matogrossensis is a Hemiptera that belongs to the oliveirai complex, a vector of Chagas' disease that feeds on vertebrate blood in all life stages. Hematophagous insects' salivary glands (SGs) produce potent pharmacologic compounds that counteract host hemostasis, including anticlotting, antiplatelet, and vasodilatory molecules. Exposure to T. matogrossensis was also found to be a risk factor associated with the endemic form of the autoimmune skin disease pemphigus foliaceus, which is described in the same regions where Chagas' disease is observed in Brazil. To obtain a further insight into the salivary biochemical and pharmacologic diversity of this kissing bug and to identify possible allergens that might be associated with this autoimmune disease, a cDNA library from its SGs was randomly sequenced. We present the analysis of a set of 2,230 (SG) cDNA sequences, 1,182 of which coded for proteins of a putative secretory nature.

Prevalence of Leptospira interrogans antibodies in free-ranging Tayassu pecari of the Southern Pantanal, Brazil, an ecosystem where wildlife and cattle interact.

We surveyed a wild population of white-lipped peccaries (Tayassu pecari) in the Brazilian Pantanal for evidence of Leptospira interrogans. Serum samples from 71 free-ranging T. pecari were obtained between 2003 and 2005 in the southern Pantanal of Mato Grosso do Sul state. We used microscopic microagglutination to test for antibodies against 14 L. interrogans serovars (antibody titers ≥ 1:100 were considered seropositive). Seventy percent of captured animals tested positive for leptospirosis antibodies. Antibodies against icterohaemorrhagiae and autumnalis serovars were the most prevalent. We used log-linear analyses to test for associations among seropositivity, age class, and sex of captured animals. Seropositivity was strongly associated with animal age class, but independent of sex. Forty-six percent of animals less than 2 years old, 63% of adults during peak reproductive years, and 100% of the oldest age class were seropositive. A nonparametric multivariate procedure (MRPP) showed that the composition of serovar antibody types changed with age, and ANOVA models demonstrated that antibody titers increased with age, suggesting long-term exposure to a greater number and variety (i.e., serovar types) of L. interrogans infections. This study presents the first quantitative survey of antibodies against L. interrogans serovars in a T. pecari population of the Pantanal. The high prevalence of leptospirosis antibodies in free-ranging white-lipped peccaries and the potential impacts on reproduction and population dynamics emphasize the need for further studies investigating the roles of Pantanal wildlife and livestock in the transmission and maintenance of L. interrogans in the environment.

An insight into the sialotranscriptome of Simulium nigrimanum, a black fly associated with fogo selvagem in South America.

Pemphigus foliaceus is a life threatening skin disease that is associated with autoimmunity to desmoglein, a skin protein involved in the adhesion of keratinocytes. This disease is endemic in certain areas of South America, suggesting the mediation of environmental factors triggering autoimmunity. Among the possible environmental factors, exposure to bites of black flies, in particular Simulium nigrimanum has been suggested. In this work, we describe the sialotranscriptome of adult female S. nigrimanum flies. It reveals the complexity of the salivary potion of this insect, comprised by over 70 distinct genes within over 30 protein families, including several novel families, even when compared with the previously described sialotranscriptome of the autogenous black fly, S. vittatum. The uncovering of this sialotranscriptome provides a platform for testing pemphigus patient sera against recombinant salivary proteins from S. nigrimanum and for the discovery of novel pharmacologically active compounds.

Environmental risk factors in endemic pemphigus foliaceus (fogo selvagem).

An ongoing sero-epidemiological study of the Terena reservation of Limao Verde, known to have a high prevalence and incidence of FS, has revealed important information about this autoimmune disease. During surveillance of this population of approximately 1,200, which began in 1994, we documented 43 FS cases and studied the transition from the normal state to the disease state in several of these individuals. Furthermore, we established that FS patients as well as a large number of normal individuals on the reservation possess anti-dsg1 autoantibodies. The following interesting observations were made: (1) the ectodomain of dsg1 contains epitopes recognized by both autoantibodies and T cells from FS patients; (2) pathogenic anti-dsg1 autoantibodies in FS belong to the IgG4 subclass; (3) nonpathogenic anti-dsg1 autoantibodies of the IgG1 subclass were detected in normal individuals from Limao Verde and in patients in the preclinical stage of the disease; (4) anti-dsg1 autoantibodies from normal individuals and patients in the preclinical stage of FS recognize the EC5 domain of dsg1, whereas pathogenic anti-dsg1 autoantibodies bind the EC1/EC2 domains; (5) houses of FS patients are rustic, with thatched roofs and walls and dirt floors; (6) there was a high frequency of hematophagous insects (bedbugs and kissing bugs) in the houses of FS patients; (7) previous studies revealed that the predominant black fly on this reservation belongs to the species Simunlium nigrimanum. These findings suggest that the environmental antigen(s) triggering the autoimmune response in FS may be linked to exposure to hematophagous insects.