Two chromosome-level genomes of Smittia aterrima and Smittia pratorum (Diptera, Chironomidae).

Chironomids are one of the most abundant aquatic insects and are widely distributed in various biological communities. However, the lack of high-quality genomes has hindered our ability to study the evolution and ecology of this group. Here, we used Nanopore long reads and Hi-C data to produce two chromosome-level genomes from mixed genomic data. The genomes of Smittia aterrima (SateA) and Smittia pratorum (SateB) were assembled into three chromosomes, with sizes of 78.45 Mb and 71.56 Mb, scaffold N50 lengths of 25.73 and 23.53 Mb, and BUSCO completeness of 98.5% and 97.8% (n = 1,367), 5.68 Mb (7.24%) and 1.94 Mb (2.72%) of repetitive elements, and predicted 12,330 (97.70% BUSCO completeness) and 11,250 (97.40%) protein-coding genes, respectively. These high-quality genomes will serve as valuable resources for comprehending the evolution and environmental adaptation of chironomids.

Comparative mitogenome analyses of twelve non-biting flies and provide insights into the phylogeny of Chironomidae (Diptera: Culicomorpha).

The family Chironomidae is represented by seven subfamilies in China, among which Chironominae and Orthocladiinae are the most diverse. To gain a better understanding of the architecture and evolution of the mitogenomes of Chironomidae, we sequenced mitogenomes of twelve species (including two published species) of the two subfamilies Chironominae and Orthocladiinae, and comparative mitogenomic analyses were performed. Thus, we identified highly conserved genome organization of twelve species with regard to genome content, nucleotide and amino acid composition, codon usage, and gene characteristics. The Ka/Ks values of most protein-coding genes were far smaller than 1, indicating that these genes were evolving under purifying selection. Phylogenetic relationships between the family Chironomidae were reconstructed using 23 species representing six subfamilies, based on protein-coding genes and rRNAs using Bayesian Inference and Maximum Likelihood. Our results suggested the following relationship within the Chironomidae: (Podonominae + Tanypodinae) + (Diamesinae + (Prodiamesinae + (Orthocladiinae + Chironominae))). This study contributes to the mitogenomic database of Chironomidae, which will be significant for studing the mitogenome evolution of Chironomidae.

Complete mitochondrial genome of a Eurytopic midge, Polypedilum nubifer (Diptera: Chironomidae).

The complete mitochondrial genome of Polypedilum nubifer was sequenced and annotated, and its general features and base composition were analyzed. The mitogenome was 15,896 bp long, comprising 13 protein-coding genes, 22 transport RNA genes, 2 ribosomal RNA genes, and 1 control region. The phylogenetic relationships based on the concatenated nucleotide sequences of 17 metagenomes from families Chironomidae, Ceratopogonidae, and Simuliidae were reconstructed. According to the phylogenetic topologies, P. nubifer was closely related to (P. unifascium + P. vanderplanki) in the maximum likelihood tree.

Corynoneura Winnertz species from Hunan Province, Oriental China, delineated with morphological and 16S rDNA data (Diptera, Chironomidae).

The genus Corynoneura Winnertz, 1846 from Hunan Province in Oriental China is reviewed. Four new species, C.enormis Fu sp. nov., C.gibbera Fu sp. nov., C.incuria Fu sp. nov., and C.longshanensis Fu sp. nov. are described and illustrated based on adult males. Sequence data from the 16S rDNA gene were used to infer relationships between these species and complement morphological delineation. Sequences from the mitochondrial large ribosomal subunit (16S rDNA) from these species are uploaded to the National Center for Biotechnology Information (NCBI). Relationships were inferred using the Neighbor-Joining method based on 16S rDNA.

Complete mitochondrial genome of Limnophyes minimus (Diptera: Chironomidae).

The complete mitochondrial genome of Limnophyes minimus (Meigen 1818) was sequenced and annotated, and its general features and base composition were analyzed. The phylogenetic relationships of the families Chironomidae, Simuliidae, Sciaridae and Culicidae based on 25 metagenomes were reconstructed using maximum likelihood (ML) methods based on the concatenated nucleotide sequences, the phylogenetic analysis showed that L. minimus belongs family Chironomidae, which is consistent with the traditional morphological classification.

Corynoneura Winnertz (Diptera, Chironomidae, Orthocladiinae) from Zhejiang Province, China.

The genus Corynoneura Winnertz, 1846 from Zhejiang Province in Oriental China is reviewed. Corynoneura aggeris Fu, sp. n., Corynoneura lateralis Fu, sp. n., Corynoneura petitspectabilis Fu, sp. n., Corynoneura prolata Fu, sp. n., and Corynoneura recta Fu, sp. n. are described and illustrated based on adult males. Corynoneura lobata Edwards, 1924 and Corynoneura tokarapequea Sasa et Suzuki, 1995 are redescribed and illustrated based on newly collected material. A key to known adult males of Corynoneura from Zhejiang Province is given.

Complete mitochondrial genome of Niphades castanea (Coleoptera: Curculionidae).

Niphades castanea Chao is an important insect pest on many plants which belong to genus Castanea. The complete mitochondrial genome of N. castanea was sequenced and analyzed. The phylogenetic relationships between N. castanea and other 41 species in the family Curculionidae were reconstructed using maximum likelihood (ML) methods based on the concatenated nucleotide sequences, the phylogenetic analysis showed that N. castanea is closely related to Hylobitelus xiaoi, which is in accordance with the traditional morphological classification.

Three new species of Corynoneura Winnertz from Oriental China (Diptera: Chironomidae: Orthocladiinae).

The males of three species of the genus Corynoneura Winnertz (1846) from Oriental China, Corynoneura cooperio sp. n. Fu Fang, C. sesquipedalis sp. n. Fu Fang, C. tumula sp. n. Fu Fang are described, and morphological characters illustrated.

Redescription of 13 holotypes of Rheocricotopus Brundin, 1956 (Diptera: Chironomidae) from the Sino-Indian Region.

Thirteen holotypes of the orthoclad genus Rheocricotopus from Sino-Indian Region: R. (Psilocricotopus) hidakadeeus Sasa & Suzuki, R. (P.) isigadeeus Sasa & Suzuki, R. (P.) kurocedeus Sasa, R. (P.) tokarakeleus Sasa & Suzuki, R. (P.) tobatervicesimus Kikuchi & Sasa, R. (Rheocricotopus) inaquereus Sasa, Kitami & Suzuki, R. (R.) inaxeyeus Sasa, Kitami & Suzuki, R. (R.) shoufukusecundus Sasa, R. (R.) tamahumeralis Sasa, R. (R.) tatequintus Sasa, R. (R.) tedorisecundus Sasa, R. (R.) togapeniculus Sasa & Okazawa and R. (R.) yakulemeus Sasa & Suzuki are re-examined and illustrated, Some additional descriptions, corrections and a key of these thirteen holotypes are given.

A New Species of Corynoneura Winnertz from Oriental China (Diptera: Chironomidae: Orthocladiinae).

A new species of Corynoneura Winnertz (1846) from Oriental China, C. ecphora sp. n. is described and illustrated as male. A distribution map of adult males in Oriental China is given. A key to known males of Oriental China is provided.

Two species of Thienemanniella Kieffer from Oriental China (Diptera: Chironomidae: Orthocladiinae).

A new species from Oriental China, Thienemanniella curva sp. n. is described and illustrated as adult males. T. nipponica which belong to eye bare species group in Thienemanniella from Guangdong Province is re-described. A revised key to known males of the world is provided.