Anatomy-aware computed tomography-to-ultrasound spine registration.

BACKGROUND: Ultrasound (US) has demonstrated to be an effective guidance technique for lumbar spine injections, enabling precise needle placement without exposing the surgeon or the patient to ionizing radiation. However, noise and acoustic shadowing artifacts make US data interpretation challenging. To mitigate these problems, many authors suggested using computed tomography (CT)-to-US registration to align the spine in pre-operative CT to intra-operative US data, thus providing localization of spinal landmarks. PURPOSE: In this paper, we propose a deep learning (DL) pipeline for CT-to-US registration and address the problem of a need for annotated medical data for network training. Firstly, we design a data generation method to generate paired CT-US data where the spine is deformed in a physically consistent manner. Secondly, we train a point cloud (PC) registration network using anatomy-aware losses to enforce anatomically consistent predictions. METHODS: Our proposed pipeline relies on training the network on realistic generated data. In our data generation method, we model the properties of the joints and disks between vertebrae based on biomechanical measurements in previous studies. We simulate the supine and prone position deformation by applying forces on the spine models. We choose the spine models from 35 patients in VerSe dataset. Each spine is deformed 10 times to create a noise-free data with ground-truth segmentation at hand. In our experiments, we use one-leave-out cross-validation strategy to measure the performance and the stability of the proposed method. For each experiment, we choose generated PCs from three spines as the test set. From the remaining, data from 3 spines act as the validation set and we use the rest of the data for training the algorithm. To train our network, we introduce anatomy-aware losses and constraints on the movement to match the physics of the spine, namely, rigidity loss and bio-mechanical loss. We define rigidity loss based on the fact that each vertebra can only transform rigidly while the disks and the surrounding tissue are deformable. Second, by using bio-mechanical loss we stop the network from inferring extreme movements by penalizing the force needed to get to a certain pose. RESULTS: To validate the effectiveness of our fully automated data generation pipeline, we qualitatively assess the fidelity of the generated data. This assessment involves verifying the realism of the spinal deformation and subsequently confirming the plausibility of the simulated ultrasound images. Next, we demonstrate that the introduction of the anatomy-aware losses brings us closer to state-of-the-art (SOTA) and yields a reduction of 0.25 mm in terms of target registration error (TRE) compared to using only mean squared error (MSE) loss on the generated dataset. Furthermore, by using the proposed losses, the rigidity loss in inference decreases which shows that the inferred deformation respects the rigidity of the vertebrae and only introduces deformations in the soft tissue area to compensate the difference to the target PC. We also show that our results are close to the SOTA for the simulated US dataset with TRE of 3.89 mm and 3.63 mm for the proposed method and SOTA respectively. In addition, we show that our method is more robust against errors in the initialization in comparison to SOTA and significantly achieves better results (TRE of 4.88 mm compared to 5.66 mm) in this experiment. CONCLUSIONS: In conclusion, we present a pipeline for spine CT-to-US registration and explore the potential benefits of utilizing anatomy-aware losses to enhance registration results. Additionally, we propose a fully automatic method to synthesize paired CT-US data with physically consistent deformations, which offers the opportunity to generate extensive datasets for network training. The generated dataset and the source code for data generation and registration pipeline can be accessed via https://github.com/mfazampour/medphys_ct_us_registration.

A Comparative Study of Correlation Methods in Functional Connectivity Analysis Using fMRI Data of Alzheimer's Patients.

Background: Functional Magnetic Resonance Imaging (fMRI) is a non-invasive neuroimaging tool, used in brain function research and is also a low-frequency signal, showing brain activation by means of Oxygen consumption. Objective: One of the reliable methods in brain functional connectivity analysis is the correlation method. In correlation analysis, the relationship between two time-series has been investigated. In fMRI analysis, the Pearson correlation is used while there are other methods. This study aims to investigate the different correlation methods in functional connectivity analysis. Material and Methods: In this analytical research, based on fMRI signals of Alzheimer's Disease (AD) and healthy individuals from the ADNI database, brain functional networks were generated using correlation techniques, including Pearson, Kendall, and Spearman. Then, the global and nodal measures were calculated in the whole brain and in the most important resting-state network called Default Mode Network (DMN). The statistical analysis was performed using non-parametric permutation test. Results: Results show that although in nodal analysis, the performance of correlation methods was almost similar, in global features, the Spearman and Kendall were better in distinguishing AD subjects. Note that, nodal analysis reveals that the functional connectivity of the posterior areas in the brain was more damaged because of AD in comparison to frontal areas. Moreover, the functional connectivity of the dominant hemisphere was disrupted more. Conclusion: Although the Pearson method has limitations in capturing non-linear relationships, it is the most prevalent method. To have a comprehensive analysis, investigating non-linear methods such as distance correlation is recommended.

Identifying brain functional connectivity alterations during different stages of Alzheimer's disease.

Purpose: Alzheimer's disease (AD) starts years before its signs and symptoms including the dementia become apparent. Diagnosis of the AD in the early stages is important to reduce the speed of brain decline. Aim of the study: Identifying the alterations in the functional connectivity of the brain during the disease stages is among the main important issues in this regard. Therefore, in this study, the changes in the functional connectivity during the AD stages were analyzed.Materials and methods: By employing the functional magnetic resonance imaging (fMRI) data and graph theory, weighted undirected graphs of the whole-brain and default mode network (DMN) network were investigated individually in the early mild cognitive impairment (EMCI), late mild cognitive impairment (LMCI), AD, and control subjects. Results: In the whole-brain analysis, during one year of disease progression, no significant changes were observed in none of the study groups. However, the intergroup comparison showed that in different stages (from healthy to AD) the efficiencies, clustering coefficient, transitivity, and modularity of the brain network have significantly changed. In the DMN network analysis, the EMCI subjects demonstrated significant alterations but no significant changes were observed in other study groups. In the nodal analysis of the DMN, the participation, clustering, and degree were among the measures significantly changed with the AD progression. Conclusions: Functional connectivity alterations are more in the first stage of AD. Since AD progresses slowly whole brain alterations are not significant in one year but DMN exhibits significant changes. Cingulum anterior and posterior areas were the first affected regions of interest (ROI) in the DMN network afterwards, the frontal superior medial ROI was declined in the functional connectivity.

Automatic detection of respiratory events during sleep from Polysomnography data using Layered Hidden Markov Model.

Objective. Sleep apnea is a serious respiratory disorder, which is associated with increased risk factors for cardiovascular disease. Many studies in recent years have been focused on automatic detection of sleep apnea from polysomnography (PSG) recordings, however, detection of subtle respiratory events named Respiratory Event Related Arousals (RERAs) that do not meet the criteria for apnea or hypopnea is still challenging. The objective of this study was to develop automatic detection of sleep apnea based on Hidden Markov Models (HMMs) which are probabilistic models with the ability to learn different dynamics of the real time-series such as clinical recordings.Approach. In this study, a hierarchy of HMMs named Layered HMM was presented to detect respiratory events from PSG recordings. The recordings of 210 PSGs from Massachusetts General Hospital's database were used for this study. To develop detection algorithms, extracted feature signals from airflow, movements over the chest and abdomen, and oxygen saturation in blood (SaO2) were chosen as observations. The respiratory disturbance index (RDI) was estimated as the number of apneas, hypopneas, and RERAs per hour of sleep.Main results. The best F1 score of the event by event detection algorithm was between 0.22 ± 0.16 and 0.70 ± 0.08 for different groups of sleep apnea severity. There was a strong correlation between the estimated and the PSG-derived RDI (R2 = 0.91,p< 0.0001). The best recall of RERA detection was achieved 0.45 ± 0.27.Significance. The results showed that the layered structure can improve the performance of the detection of respiratory events during sleep.

Spatiotemporal registration and fusion of transthoracic echocardiography and volumetric coronary artery tree.

PURPOSE: Cardiac multimodal image fusion can offer an image with various types of information in a single image. Many coronary stenosis, which are anatomically clear, are not functionally significant. The treatment of such kind of stenosis can cause irreversible effects on the patient. Thus, choosing the best treatment planning depend on anatomical and functional information is very beneficial. METHODS: An algorithm for the fusion of coronary computed tomography angiography (CCTA) as an anatomical and transthoracic echocardiography (TTE) as a functional modality is presented. CCTA and TTE are temporally registered using manifold learning. A pattern search optimization algorithm, using normalized mutual information, is used to find the best match slice to TTE frame from CCTA volume. By employing a free-form deformation, the heart's non-rigid deformations are modeled. The spatiotemporal registered TTE frame is embedded to achieve the fusion result. RESULTS: The accuracy is evaluated on CCTA and TTE data obtained from 10 patients. In temporal registration, mean absolute error of 1.97 [Formula: see text] 1.23 is resulted from comparing the output frame numbers from the algorithm and from manual assignment by an expert. In spatial registration, the accuracy of the similarity between the best match slice from CCTA volume and TTE frame is resulted in 1.82 [Formula: see text] 0.024 mm, 6.74 [Formula: see text] 0.013 mm, and 0.901 [Formula: see text] 0.0548 due to mean absolute distance, Hausdorff distance, and Dice similarity coefficient, respectively. CONCLUSION: Without the use of ECG and Optical tracking systems, a semiautomatic framework of spatiotemporal registration and fusion of CCTA volume and TTE frame is presented. The experimental results showed the effectiveness of our proposed method to create complementary information from TTE and CCTA, which may help in the early diagnosis and effective treatment of cardiovascular diseases (CVDs).

Detection of Apnea Bradycardia from ECG Signals of Preterm Infants Using Layered Hidden Markov Model.

Apnea-bradycardia (AB) is a common complication in prematurely born infants, which is associated with reduced survival and neurodevelopmental outcomes. Thus, early detection or predication of AB episodes is critical for initiating preventive interventions. To develop automatic real-time operating systems for early detection of AB, recent advances in signal processing can be employed. Hidden Markov Models (HMM) are probabilistic models with the ability of learning different dynamics of the real time-series such as clinical recordings. In this study, a hierarchy of HMMs named as layered HMM was presented to detect AB episodes from pre-processed single-channel Electrocardiography (ECG). For training the hierarchical structure, RR interval, and width of QRS complex were extracted from ECG as observations. The recordings of 32 premature infants with median 31.2 (29.7, 31.9) weeks of gestation were used for this study. The performance of the proposed layered HMM was evaluated in detecting AB. The best average accuracy of 97.14 ± 0.31% with detection delay of - 5.05 ± 0.41 s was achieved. The results show that layered structure can improve the performance of the detection system in early detecting of AB episodes. Such system can be incorporated for more robust long-term monitoring of preterm infants.

Deep sparse graph functional connectivity analysis in AD patients using fMRI data.

Functional magnetic resonance imaging (fMRI) is a non-invasive method that helps to analyze brain function based on BOLD signal fluctuations. Functional Connectivity (FC) catches the transient relationship between various brain regions usually measured by correlation analysis. The elements of the correlation matrix are between -1 to 1. Some of them are very small values usually related to weak and spurious correlations due to noises and artifacts. They can not be concluded as real strong correlations between brain regions and their existence could make a misconception and leads to fake results. It is crucial to make a conclusion based on reliable and informative correlations. In order to eliminate weak correlations, thresholding is a common method. In this routine, by adjusting a threshold the values below the threshold turn to zero and the rest remains. In this paper, in addition to thresholding, two other methods including spectral sparsification based on Effective Resistance (ER) and autoencoders are investigated for sparsing the correlation matrices. Autoencoders are based on deep learning neural networks and ER considers the network as a resistive circuit. The fMRI data of the study correspond to Alzheimer's patients and control subjects. Graph global measures are calculated and a non-parametric permutation test is reported. Results show that the autoencoder and spectral sparsification achieved more distinctive brain graphs between healthy and AD subjects. Also, more graph global features were significantly different from these two methods due to better elimination of weak correlations and preserve more informative ones. Regardless of the sparsification method features including average strength, clustering, local efficiency, modularity, and transitivity are significantly different (P-value=0.05). On the other hand, the measures radius, diameter, and eccentricity showed no significant differences in none of the methods. In addition, according to three different methods, the brain regions show fragile and solid FCs are determined.

Investigating time-varying functional connectivity derived from the Jackknife Correlation method for distinguishing between emotions in fMRI data.

Investigating human brain activity during expressing emotional states provides deep insight into complex cognitive functions and neurological correlations inside the brain. To be able to resemble the brain function in the best manner, a complex and natural stimulus should be applied as well, the method used for data analysis should have fewer assumptions, simplifications, and parameter adjustment. In this study, we examined a functional magnetic resonance imaging dataset obtained during an emotional audio-movie stimulus associated with human life. We used Jackknife Correlation (JC) method to derive a representation of time-varying functional connectivity. We applied different binary measures and thoroughly investigated two weighted measures to study different properties of binary and weighted temporal networks. Using this approach, we indicated different aspects of human brain function during expressing different emotions. The findings of global and nodal measures could demonstrate a significant difference between emotions and significant regions in each emotion, respectively. Also, the temporal centrality properties of nodes were different in emotional states. Ultimately, we showed that the resulting measures of temporal snapshots created by JC method can distinguish between different emotions.

A new deep convolutional neural network design with efficient learning capability: Application to CT image synthesis from MRI.

PURPOSE: Despite the proven utility of multiparametric magnetic resonance imaging (MRI) in radiation therapy, MRI-guided radiation treatment planning is limited by the fact that MRI does not directly provide the electron density map required for absorbed dose calculation. In this work, a new deep convolutional neural network model with efficient learning capability, suitable for applications where the number of training subjects is limited, is proposed to generate accurate synthetic computed tomography (sCT) images from MRI. METHODS: This efficient convolutional neural network (eCNN) is built upon a combination of the SegNet architecture (a 13-layer encoder-decoder structure similar to the U-Net network) without softmax layers and the residual network. Moreover, maxpooling indices and high resolution features from the encoding network were incorporated into the corresponding decoding layers. A dataset containing 15 co-registered MRI-CT pairs of male pelvis (1861 two-dimensional images) were used for training and evaluation of MRI to CT synthesis process using a fivefold cross-validation scheme. The performance of the eCNN model was compared to an atlas-based sCT generation technique as well as the original U-Net model considering CT images as reference. The mean error (ME), mean absolute error (MAE), Pearson correlation coefficient (PCC), structural similarity index (SSIM), and peak signal-to-noise ratio (PSNR) metrics were calculated between sCT and ground truth CT images. RESULTS: The eCNN model exhibited effective learning capability using only 12 training subjects. The model achieved a ME and MAE of 2.8 ± 10.3 and 30.0 ± 10.4 HU, respectively, which is substantially lower than values achieved by the atlas-based (-0.8 ± 35.4 and 64.6 ± 21.2) and U-Net (7.4 ± 11.9 and 44.0 ± 8.8) methods, respectively. CONCLUSION: The proposed eCNN model exhibited efficient convergence rate with a low number of training subjects, while providing accurate synthetic CT images. The eCNN model outperformed the original U-Net model and showed superior performance to the atlas-based technique.

Multiclass classification of patients during different stages of Alzheimer's disease using fMRI time-series.

Alzheimer's Disease (AD) begins several years before the symptoms develop. It starts with Mild Cognitive Impairment (MCI) which can be separated into Early MCI and Late MCI (EMCI and LMCI). Functional connectivity analysis and classification are done among the different stages of illness with Functional Magnetic Resonance Imaging (fMRI). In this study, in addition to the four stages including healthy, EMCI, LMCI, and AD, the patients have been tracked for a year. Indeed, the classification has been done among 7 groups to analyze the functional connectivity changes in one year in different stages. After generating the functional connectivity graphs for eliminating the weak links, three different sparsification methods were used. In addition to simple thresholding, spectral sparsification based on effective resistance and sparse autoencoder were performed in order to analyze the effect of sparsification routine on classification results. Also, instead of extracting common features, the correlation matrices were reshaped to a correlation vector and used as a feature vector to enter the classifier. Since the correlation matrix is symmetric, in another analysis half of the feature vector was used, moreover, the Genetic Algorithm (GA) also utilized for feature vector dimension reduction. The non-linear SVM classifier with a polynomial kernel applied. The results showed that the autoencoder sparsification method had the greatest discrimination power with the accuracy of 98.35% for classification when the feature vector was the full correlation matrix.

Noninvasive fetal ECG extraction using doubly constrained block-term decomposition.

Fetal electrocardiogram (fECG) monitoring is a beneficial method for assessing fetal health and diagnosing the fetal cardiac condition during pregnancy. In this study, an algorithm is proposed to extract fECG from maternal abdominal signals based on doubly constrained block-term (DoCoBT) tensor decomposition. This tensor decomposition method is constrained by quasiperiodicity constraints of fetal and maternal ECG signals. Tensor decompositions are more powerful tools than matrix decomposition, due to employing more information for source separation. Tensorizing abdominal signals and using periodicity constraints of fetal and maternal ECG, appropriately separates subspaces of the mother, the fetus(es) and noise. The quantitative and qualitative results of the proposed method show improved performance of DoCoBT decomposition versus other tensor and matrix decomposition methods in noisy conditions.

Optical Radiomic Signatures Derived from Optical Coherence Tomography Images Improve Identification of Melanoma.

The current gold standard for clinical diagnosis of melanoma is excisional biopsy and histopathologic analysis. Approximately 15-30 benign lesions are biopsied to diagnose each melanoma. In addition, biopsies are invasive and result in pain, anxiety, scarring, and disfigurement of patients, which can add additional burden to the health care system. Among several imaging techniques developed to enhance melanoma diagnosis, optical coherence tomography (OCT), with its high-resolution and intermediate penetration depth, can potentially provide required diagnostic information noninvasively. Here, we present an image analysis algorithm, "optical properties extraction (OPE)," which improves the specificity and sensitivity of OCT by identifying unique optical radiomic signatures pertinent to melanoma detection. We evaluated the performance of the algorithm using several tissue-mimicking phantoms and then tested the OPE algorithm on 69 human subjects. Our data show that benign nevi and melanoma can be differentiated with 97% sensitivity and 98% specificity. These findings suggest that the adoption of OPE algorithm in the clinic can lead to improvements in melanoma diagnosis and patient experience. SIGNIFICANCE: This study describes a noninvasive, safe, simple-to-implement, and accurate method for the detection and differentiation of malignant melanoma versus benign nevi.

Statistical Association Mapping of Population-Structured Genetic Data.

Association mapping of genetic diseases has attracted extensive research interest during the recent years. However, most of the methodologies introduced so far suffer from spurious inference of the associated sites due to population inhomogeneities. In this paper, we introduce a statistical framework to compensate for this shortcoming by equipping the current methodologies with a state-of-the-art clustering algorithm being widely used in population genetics applications. The proposed framework jointly infers the disease-associated factors and the hidden population structures. In this regard, a Markov Chain-Monte Carlo (MCMC) procedure has been employed to assess the posterior probability distribution of the model parameters. We have implemented our proposed framework on a software package whose performance is extensively evaluated on a number of synthetic datasets, and compared to some of the well-known existing methods such as STRUCTURE. It has been shown that in extreme scenarios, up to $10-15$10-15 percent of improvement in the inference accuracy is achieved with a moderate increase in computational complexity.

Effects of non-linear correlation measures on brain functional connectivity in Parkinson's disease.

Parkinson's disease (PD) is one of the most prevalent and growing disorders. The most reason for this disease is the abnormalities in brain functional organization of PD patients. Functional magnetic resonance imaging in the resting state (rs-fMRI) is a useful technique to assess brain dysfunctions in patients. The objective of our research is to generate the closest model of complex brain network by different approaches. Hence we constructed the brain graphs employing one linear and three non-linear correlation metrics in order to investigate complicated relations among signals. The local and global metrics of the produced correlation matrices were extracted utilizing graph theory. Evaluating centralization, a global metric, exhibited a decrease in PD patients compared with healthy controls. In addition, we investigated significant changes of nodal degree in patients. The achieved results on graph measures implied alterations of brain functional connectivity. To conclude, we disclosed new findings in brain functional networks of PD patients by non-linear correlation measures.

Refractive index correction in optical coherence tomography images of multilayer tissues.

We propose an algorithm to compensate for the refractive index error in the optical coherence tomography (OCT) images of multilayer tissues, such as skin. The performance of the proposed method has been evaluated on one- and two-layer solid phantoms, as well as the skin of rat paw.

Cardiac contraction motion compensation in gated myocardial perfusion SPECT: A comparative study.

INTRODUCTION: Cardiac contraction significantly degrades quality and quantitative accuracy of gated myocardial perfusion SPECT (MPS) images. In this study, we aimed to explore different techniques in motion-compensated temporal processing of MPS images and their impact on image quality and quantitative accuracy. MATERIAL AND METHOD: 50 patients without known heart condition underwent gated MPS. 3D motion compensation methods using Motion Freezing by Cedars Sinai (MF), Log-domain Diffeomorphic Demons (LDD) and Free-Form Deformation (FFD) were applied to warp all image phases to fit the end-diastolic (ED) phase. Afterwards, myocardial wall thickness, myocardial to blood pool contrast, and image contrast-to noise ratio (CNR) were measured in summed images with no motion compensation (NoMC) and compensated images (MF, LDD and FFD). Total Perfusion Defect (TPD) was derived from Cedars-Sinai software, on the basis of sex-specific normal limits. RESULT: Left ventricle (LV) lateral wall thickness was reduced after applying motion compensation (p < 0.05). Myocardial to blood pool contrast and CNR in compensated images were greater than NoMC (p < 0.05). TPD_LDD was in good agreement with the corresponding TPD_MF (p = 0.13). CONCLUSION: All methods have improved image quality and quantitative performance relative to NoMC. LDD and FFD are fully automatic and do not require any manual intervention, while MF is dependent on contour definition. In terms of diagnostic parameters LDD is in good agreement with MF which is a clinically accepted method. Further investigation along with diagnostic reference standards, in order to specify diagnostic value of each technique is recommended.

Transcranial DC stimulation modifies functional connectivity of large-scale brain networks in abstinent methamphetamine users.

Background: Transcranial direct current stimulation (tDCS) is a noninvasive brain stimulation tool suited to alter cortical excitability and activity via the application of weak direct electrical currents. An increasing number of studies in the addiction literature suggests that tDCS modulates subjective self-reported craving through stimulation of dorsolateral prefrontal cortex (DLPFC). The major goal of this study was to explore effects of bilateral DLPFC stimulation on resting state networks (RSNs) in association with drug craving modulation. We targeted three large-scale RSNs; the default mode network (DMN), the executive control network (ECN), and the salience network (SN). Methods: Fifteen males were recruited after signing written informed consent. We conducted a double-blinded sham-controlled crossover study. Twenty-minute "real" and "sham" tDCS (2 mA) were applied over the DLPFC on two separate days in random order. Each subject received both stimulation conditions with a 1-week washout period. The anode and cathode electrodes were located over the right and left DLPFC, respectively. Resting state fMRI was acquired before and after real and sham stimulation. Subjective craving was assessed before and after each fMRI scan. The RSNs were identified using seed-based analysis and were compared using a generalized linear model. Results: Subjective craving decreased significantly after real tDCS compared to sham stimulation (p = .03). Moreover, the analysis shows significant modulation of DMN, ECN, and SN after real tDCS compared to sham stimulation. Additionally, alteration of subjective craving score was correlated with modified activation of the three networks. Discussion: Given the observed alteration of the targeted functional brain networks in methamphetamine users, new potentials are highlighted for tDCS as a network intervention strategy and rsfMRI as a suitable monitoring method for these interventions.

Image Registration Based on Low Rank Matrix: Rank-Regularized SSD.

Similarity measure is a main core of image registration algorithms. Spatially varying intensity distortion is an important challenge, which affects the performance of similarity measures. Correlation among the pixels is the main characteristic of this distortion. Similarity measures such as sum-of-squared-differences (SSD) and mutual information ignore this correlation; hence, perfect registration cannot be achieved in the presence of this distortion. In this paper, we model this correlation with the aid of the low rank matrix theory. Based on this model, we compensate this distortion analytically and introduce rank-regularized SSD (RRSSD). This new similarity measure is a modified SSD based on singular values of difference image in mono-modal imaging. In fact, image registration and distortion correction are performed simultaneously in the proposed model. Based on our experiments, the RRSSD similarity measure achieves clinically acceptable registration results, and outperforms other state-of-the-art similarity measures, such as the well-known method of residual complexity.

Sparse registration of diffusion weighted images.

BACKGROUND AND OBJECTIVE: Registration is a critical step in group analysis of diffusion weighted images (DWI). Image registration is also necessary for construction of white matter atlases that can be used to identify white matter changes. A challenge in the registration of DWI is that the orientation of the fiber bundles should be considered in the process, making their registration more challenging than that of the scalar images. Most of the current registration methods use a model of diffusion profile, limiting the method to the used model. METHODS: We propose a model-independent method for DWI registration. The proposed method uses a multi-level free-form deformation (FFD), a sparse similarity measure, and a dictionary. We also propose a synthesis K-SVD algorithm for sparse interpolation of images during the registration process. We utilize two dictionaries: analysis dictionary is learned based on diffusion signals while synthesis dictionary is generated based on image patches. The proposed multi-level approach registers anatomical structures at different scales. T-test is used to determine the significance of the differences between different methods. RESULTS: We have shown the efficiency of the proposed approach using real data. The method results in smaller generalized fractional anisotropy (GFA) root mean square (RMS) error (0.05 improvements, p = 0.0237) and angular error (0.37 ° improvement, p = 0.0330) compared to the large deformation diffeomorphic metric mapping (LDDMM) method and advanced normalization tools (ANTs). CONCLUSION: Sparse registration of diffusion signals enables registration of diffusion weighted images without using a diffusion model.

Optical Coherence Tomography Technology and Quality Improvement Methods for Optical Coherence Tomography Images of Skin: A Short Review.

Optical coherence tomography (OCT) delivers 3-dimensional images of tissue microstructures. Although OCT imaging offers a promising high-resolution method, OCT images experience some artifacts that lead to misapprehension of tissue structures. Speckle, intensity decay, and blurring are 3 major artifacts in OCT images. Speckle is due to the low coherent light source used in the configuration of OCT. Intensity decay is a deterioration of light with respect to depth, and blurring is the consequence of deficiencies of optical components. In this short review, we summarize some of the image enhancement algorithms for OCT images which address the abovementioned artifacts.