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1.
PLoS One ; 18(10): e0292590, 2023.
Artículo en Inglés | MEDLINE | ID: mdl-37812634

RESUMEN

Serological assays for bovine tuberculosis diagnosis require the use of multiple Mycobacterium bovis specific antigens to ensure the detection of infected animals. In the present study, identification and selection process of antigens, based on data from published proteomic studies and involving the use of bioinformatics tools and an immuno-screening step, was firstly performed for identifying novel antigens that elicit an antibody response in M. bovis infection. Based on this approach, a panel of 10 M. bovis antigens [with known relevance (MPB70, MPB83, MPB70/83, and ESAT6/CFP10) and novel (Mb1961c, Mb1301c, Mb3871, Mb1403, Mb0592, and PE25/PPE41)] were constructed and thenused to develop a new multiplexed serological assay based on Luminex technology. The performance of the Luminex-bTB immunoassay was evaluated using sera from cattle with known tuberculosis status. Among the proteins whose ability to detect bovine tuberculosis was evaluated for the first time, PE25/PPE41 and Mb1403, but not Mb3871, showed good detection capacity. Following multiple antigen combination, the final Luminex-bTB immunoassay included seven antigens (MPB70, MPB83, MPB70/83, ESAT6/CFP10, PE25/PPE41, Mb1403, and Mb0592) and showed better global performance than the immunoassay using the four usual antigens (MPB70, MPB70/83, MPB83 and ESAT6/CFP10). The specificity and sensitivity values were, respectively, of 97.6% and 42.8% when the cut-off of two-positive antigens was used to classify samples as positive. With the use of the more-restrictive criterion of three-positive antigens, the specificity increased to 99.2% but the sensitivity decreased to 23.9%. The analysis of antigen profiles generated with the Luminex-bTB immunoassay showed that mainly serodominant proteins were recognized in samples from infected cattle. The detection of Mb1961c and Mb1301c appeared to be associated with presumed false-positive results. Moreover, sera from cattle originating from bTB-outbreaks but having inconclusive or negative skin test results were identified as positive by the Luminex-bTB immunoassay and showed an antigen pattern associated with M. bovis infection. The Luminex-bTB immunoassay including seven antigens may be useful as adjunct test for the detection of M. bovis-infected herds, and different cut-offs could be applied according to the bovine tuberculosis epidemiological context.


Asunto(s)
Mycobacterium bovis , Tuberculosis Bovina , Animales , Bovinos , Tuberculosis Bovina/microbiología , Proteómica , Antígenos Bacterianos , Inmunoensayo , Ensayo de Inmunoadsorción Enzimática/métodos
2.
J Biol Chem ; 299(2): 102892, 2023 02.
Artículo en Inglés | MEDLINE | ID: mdl-36642181

RESUMEN

Bone morphogenetic proteins (BMPs) are secreted cytokines belonging to the transforming growth factor-ß superfamily. New therapeutic approaches based on BMP activity, particularly for cartilage and bone repair, have sparked considerable interest; however, a lack of understanding of their interaction pathways and the side effects associated with their use as biopharmaceuticals have dampened initial enthusiasm. Here, we used BMP-2 as a model system to gain further insight into both the relationship between structure and function in BMPs and the principles that govern affinity for their cognate antagonist Noggin. We produced BMP-2 and Noggin as inclusion bodies in Escherichia coli and developed simple and efficient protocols for preparing pure and homogeneous (in terms of size distribution) solutions of the native dimeric forms of the two proteins. The identity and integrity of the proteins were confirmed using mass spectrometry. Additionally, several in vitro cell-based assays, including enzymatic measurements, RT-qPCR, and matrix staining, demonstrated their biological activity during cell chondrogenic and hypertrophic differentiation. Furthermore, we characterized the simple 1:1 noncovalent interaction between the two ligands (KDca. 0.4 nM) using bio-layer interferometry and solved the crystal structure of the complex using X-ray diffraction methods. We identified the residues and binding forces involved in the interaction between the two proteins. Finally, results obtained with the BMP-2 N102D mutant suggest that Noggin is remarkably flexible and able to accommodate major structural changes at the BMP-2 level. Altogether, our findings provide insights into BMP-2 activity and reveal the molecular details of its interaction with Noggin.


Asunto(s)
Proteína Morfogenética Ósea 2 , Proteínas Portadoras , Condrogénesis , Citocinas , Humanos , Proteína Morfogenética Ósea 2/genética , Proteína Morfogenética Ósea 2/farmacología , Cartílago/metabolismo , Diferenciación Celular , Citocinas/farmacología , Factor de Crecimiento Transformador beta/farmacología , Proteínas Portadoras/metabolismo
3.
Food Chem ; 332: 127413, 2020 Dec 01.
Artículo en Inglés | MEDLINE | ID: mdl-32652410

RESUMEN

Mass spectrometry-based methods coupled with stable isotope dilution have become effective and widely used methods for the detection and quantification of food allergens. Current methods target signature peptides resulting from proteolytic digestion of proteins of the allergenic ingredient. The choice of appropriate stable isotope-labelled internal standard is crucial, given the diversity of encountered food matrices which can affect sample preparation and analysis. We propose the use of concatemer, an artificial and stable isotope-labelled protein composed of several concatenated signature peptides as internal standard. With a comparative analysis of three matrices contaminated with four allergens (egg, milk, peanut, and hazelnut), the concatemer approach was found to offer advantages associated with the use of labelled proteins, ideal but unaffordable, and circumvent certain limitations of traditionally used synthetic peptides as internal standards. Although used in the proteomic field for more than a decade, concatemer strategy has not yet been applied for food analysis.


Asunto(s)
Alérgenos/análisis , Proteómica/métodos , Alérgenos/metabolismo , Secuencia de Aminoácidos , Animales , Arachis/metabolismo , Cromatografía Líquida de Alta Presión , Corylus/metabolismo , Huevos/análisis , Marcaje Isotópico , Espectrometría de Masas , Leche/metabolismo , Isótopos de Nitrógeno/química , Péptidos/análisis , Péptidos/química , Proteómica/normas , Estándares de Referencia , Espectrometría de Masas en Tándem
4.
Front Immunol ; 9: 2278, 2018.
Artículo en Inglés | MEDLINE | ID: mdl-30386328

RESUMEN

Monoclonal antibodies are playing an increasing role in both human and animal health. Different strategies of protein and chemical engineering, including humanization techniques of non-human antibodies were applied successfully to optimize clinical performances of antibodies. Despite the emergence of techniques allowing the development of fully human antibodies such as transgenic Xeno-mice, antibody humanization remains a standard procedure for therapeutic antibodies. An important prerequisite for antibody humanization requires standardized numbering methods to define precisely complementary determining regions (CDR), frameworks and residues from the light and heavy chains that affect the binding affinity and/or specificity of the antibody-antigen interaction. The recently generated deep-sequencing data and the increasing number of solved three-dimensional structures of antibodies from human and non-human origins have led to the emergence of numerous databases. However, these different databases use different numbering conventions and CDR definitions. In addition, the large fluctuation of the variable chain lengths, especially in CDR3 of heavy chains (CDRH3), hardly complicates the comparison and analysis of antibody sequences and the identification of the antigen binding residues. This review compares and discusses the different numbering schemes and "CDR" definition that were established up to date. Furthermore, it summarizes concepts and strategies used for numbering residues of antibodies and CDR residues identification. Finally, it discusses the importance of specific sets of residues in the binding affinity and/or specificity of immunoglobulins.


Asunto(s)
Aminoácidos/inmunología , Anticuerpos Monoclonales/inmunología , Regiones Determinantes de Complementariedad/inmunología , Cadenas Pesadas de Inmunoglobulina/inmunología , Cadenas Ligeras de Inmunoglobulina/inmunología , Secuencia de Aminoácidos , Aminoácidos/química , Aminoácidos/genética , Animales , Anticuerpos Monoclonales/química , Anticuerpos Monoclonales/genética , Regiones Determinantes de Complementariedad/química , Regiones Determinantes de Complementariedad/genética , Humanos , Cadenas Pesadas de Inmunoglobulina/química , Cadenas Pesadas de Inmunoglobulina/genética , Cadenas Ligeras de Inmunoglobulina/química , Cadenas Ligeras de Inmunoglobulina/genética , Ratones , Dominios Proteicos
5.
J Vis Exp ; (132)2018 02 01.
Artículo en Inglés | MEDLINE | ID: mdl-29443069

RESUMEN

Biosensors are becoming increasingly important and implemented in various fields such as pathogen detection, molecular diagnosis, environmental monitoring, and food safety control. In this context, we used ß-lactamases as efficient reporter enzymes in several protein-protein interaction studies. Furthermore, their ability to accept insertions of peptides or structured proteins/domains strongly encourages the use of these enzymes to generate chimeric proteins. In a recent study, we inserted a single-domain antibody fragment into the Bacillus licheniformis BlaP ß-lactamase. These small domains, also called nanobodies, are defined as the antigen-binding domains of single chain antibodies from camelids. Like common double chain antibodies, they show high affinities and specificities for their targets. The resulting chimeric protein exhibited a high affinity against its target while retaining the ß-lactamase activity. This suggests that the nanobody and ß-lactamase moieties remain functional. In the present work, we report a detailed protocol that combines our hybrid ß-lactamase system to the biosensor technology. The specific binding of the nanobody to its target can be detected thanks to a conductimetric measurement of the protons released by the catalytic activity of the enzyme.


Asunto(s)
Bioensayo/métodos , Técnicas Biosensibles/métodos , beta-Lactamasas/metabolismo , Humanos
6.
Bioengineering (Basel) ; 4(1)2017 Feb 23.
Artículo en Inglés | MEDLINE | ID: mdl-28952495

RESUMEN

Hybridoma cells are commonly grown for the production of monoclonal antibodies (MAb). For monitoring and control purposes of the bioreactors, dynamic models of the cultures are required. However these models are difficult to infer from the usually limited amount of available experimental data and do not focus on target protein production optimization. This paper explores an experimental case study where hybridoma cells are grown in a sequential batch reactor. The simplest macroscopic reaction scheme translating the data is first derived using a maximum likelihood principal component analysis. Subsequently, nonlinear least-squares estimation is used to determine the kinetic laws. The resulting dynamic model reproduces quite satisfactorily the experimental data, as evidenced in direct and cross-validation tests. Furthermore, model predictions can also be used to predict optimal medium renewal time and composition.

7.
Biomed Res Int ; 2013: 827621, 2013.
Artículo en Inglés | MEDLINE | ID: mdl-24066299

RESUMEN

Designing hybrid proteins is a major aspect of protein engineering and covers a very wide range of applications from basic research to medical applications. This review focuses on the use of class A ß-lactamases as versatile scaffolds to design hybrid enzymes (referred to as ß-lactamase hybrid proteins, BHPs) in which an exogenous peptide, protein or fragment thereof is inserted at various permissive positions. We discuss how BHPs can be specifically designed to create bifunctional proteins, to produce and to characterize proteins that are otherwise difficult to express, to determine the epitope of specific antibodies, to generate antibodies against nonimmunogenic epitopes, and to better understand the structure/function relationship of proteins.


Asunto(s)
Epítopos/genética , Ingeniería de Proteínas , Proteínas Recombinantes de Fusión/genética , beta-Lactamasas/genética , Anticuerpos/genética , Anticuerpos/inmunología , Epítopos/inmunología , Humanos , Estructura Terciaria de Proteína , Proteínas Recombinantes de Fusión/química , beta-Lactamasas/química
8.
PLoS One ; 7(3): e31253, 2012.
Artículo en Inglés | MEDLINE | ID: mdl-22438863

RESUMEN

Nine neurodegenerative disorders, called polyglutamine (polyQ) diseases, are characterized by the formation of intranuclear amyloid-like aggregates by nine proteins containing a polyQ tract above a threshold length. These insoluble aggregates and/or some of their soluble precursors are thought to play a role in the pathogenesis. The mechanism by which polyQ expansions trigger the aggregation of the relevant proteins remains, however, unclear. In this work, polyQ tracts of different lengths were inserted into a solvent-exposed loop of the ß-lactamase BlaP and the effects of these insertions on the properties of BlaP were investigated by a range of biophysical techniques. The insertion of up to 79 glutamines does not modify the structure of BlaP; it does, however, significantly destabilize the enzyme. The extent of destabilization is largely independent of the polyQ length, allowing us to study independently the effects intrinsic to the polyQ length and those related to the structural integrity of BlaP on the aggregating properties of the chimeras. Only chimeras with 55Q and 79Q readily form amyloid-like fibrils; therefore, similarly to the proteins associated with diseases, there is a threshold number of glutamines above which the chimeras aggregate into amyloid-like fibrils. Most importantly, the chimera containing 79Q forms amyloid-like fibrils at the same rate whether BlaP is folded or not, whereas the 55Q chimera aggregates into amyloid-like fibrils only if BlaP is unfolded. The threshold value for amyloid-like fibril formation depends, therefore, on the structural integrity of the ß-lactamase moiety and thus on the steric and/or conformational constraints applied to the polyQ tract. These constraints have, however, no significant effect on the propensity of the 79Q tract to trigger fibril formation. These results suggest that the influence of the protein context on the aggregating properties of polyQ disease-associated proteins could be negligible when the latter contain particularly long polyQ tracts.


Asunto(s)
Amiloide/genética , Amiloide/metabolismo , Enfermedades Neurodegenerativas/genética , Enfermedades Neurodegenerativas/metabolismo , Péptidos/genética , Péptidos/metabolismo , Secuencia de Aminoácidos , Amiloide/química , Amiloide/ultraestructura , Bacillus/enzimología , Bacillus/genética , Cristalografía por Rayos X , Estabilidad de Enzimas , Humanos , Técnicas In Vitro , Cinética , Microscopía Electrónica de Transmisión , Modelos Moleculares , Datos de Secuencia Molecular , Enfermedades Neurodegenerativas/etiología , Péptidos/química , Conformación Proteica , Desnaturalización Proteica , Multimerización de Proteína , Proteínas Recombinantes de Fusión/química , Proteínas Recombinantes de Fusión/genética , Proteínas Recombinantes de Fusión/metabolismo , Proteínas Recombinantes de Fusión/ultraestructura , Termodinámica , Expansión de Repetición de Trinucleótido , beta-Lactamasas/química , beta-Lactamasas/genética , beta-Lactamasas/metabolismo , beta-Lactamasas/ultraestructura
9.
Biomacromolecules ; 12(9): 3194-204, 2011 Sep 12.
Artículo en Inglés | MEDLINE | ID: mdl-21761871

RESUMEN

The final goal of the present study was the development of a 3-D chitosan dressing that would shorten the healing time of skin wounds by stimulating migration, invasion, and proliferation of the relevant cutaneous resident cells. Three-dimensional chitosan nanofibrillar scaffolds produced by electrospinning were compared with evaporated films and freeze-dried sponges for their biological properties. The nanofibrillar structure strongly improved cell adhesion and proliferation in vitro. When implanted in mice, the nanofibrillar scaffold was colonized by mesenchymal cells and blood vessels. Accumulation of collagen fibrils was also observed. In contrast, sponges induced a foreign body granuloma. When used as a dressing covering full-thickness skin wounds in mice, chitosan nanofibrils induced a faster regeneration of both the epidermis and dermis compartments. Altogether our data illustrate the critical importance of the nanofibrillar structure of chitosan devices for their full biocompatibility and demonstrate the significant beneficial effect of chitosan as a wound-healing biomaterial.


Asunto(s)
Materiales Biocompatibles/química , Quitosano , Microfibrillas/metabolismo , Nanofibras/química , Piel/efectos de los fármacos , Ingeniería de Tejidos/métodos , Andamios del Tejido/química , Cicatrización de Heridas/efectos de los fármacos , Animales , Vendajes , Materiales Biocompatibles/farmacología , Adhesión Celular/efectos de los fármacos , Proliferación Celular/efectos de los fármacos , Células Cultivadas , Quitosano/química , Quitosano/metabolismo , Células Endoteliales/citología , Células Endoteliales/efectos de los fármacos , Células Endoteliales/metabolismo , Matriz Extracelular/química , Matriz Extracelular/metabolismo , Fibroblastos/citología , Fibroblastos/efectos de los fármacos , Fibroblastos/metabolismo , Granuloma , Queratinocitos/citología , Queratinocitos/efectos de los fármacos , Queratinocitos/metabolismo , Células Madre Mesenquimatosas/citología , Células Madre Mesenquimatosas/metabolismo , Ratones , Microfibrillas/química , Microfibrillas/ultraestructura , Microscopía Electrónica de Rastreo , Nanofibras/ultraestructura , Neovascularización Fisiológica/efectos de los fármacos , Piel/crecimiento & desarrollo , Cicatrización de Heridas/fisiología
10.
Protein Sci ; 20(8): 1451-63, 2011 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-21674664

RESUMEN

This work analyses the chitin-binding and catalytic domains of the human macrophage chitotriosidase and investigates the physiological role of this glycoside hydrolase in a complex mechanism such as the innate immune system, especially its antifungal activity. Accordingly, we first analyzed the ability of its chitin-binding domain to interact with chitin embedded in fungal cell walls using the ß-lactamase activity reporter system described in our previous work. The data showed that the chitin-binding activity was related to the cell wall composition of the fungi strains and that their peptide-N-glycosidase/zymolyase treatments increased binding to fungal by increasing protein permeability. We also investigated the antifungal activity of the enzyme against Candida albicans. The antifungal properties of the complete chitotriosidase were analyzed and compared with those of the isolated chitin-binding and catalytic domains. The isolated catalytic domain but not the chitin-binding domain was sufficient to provide antifungal activity. Furthermore, to explain the lack of obvious pathologic phenotypes in humans homozygous for a widespread mutation that renders chitotriosidase inactive, we postulated that the absence of an active chitotriosidase might be compensated by the expression of another human hydrolytic enzyme such as lysozyme. The comparison of the antifungal properties of chitotriosidase and lysozyme indicated that surprisingly, both enzymes have similar in vitro antifungal properties. Furthermore, despite its more efficient hydrolytic activity on chitin, the observed antifungal activity of chitotriosidase was lower than that of lysozyme. Finally, this antifungal duality between chitotriosidase and lysozyme is discussed in the context of innate immunity.


Asunto(s)
Hexosaminidasas/metabolismo , Hexosaminidasas/farmacología , Macrófagos/enzimología , Antifúngicos/metabolismo , Antifúngicos/farmacología , Sitios de Unión , Candida/efectos de los fármacos , Candida/metabolismo , Pared Celular/metabolismo , Quitina/metabolismo , Humanos , Hifa/efectos de los fármacos , Cinética , Viabilidad Microbiana/efectos de los fármacos , Muramidasa/metabolismo , Muramidasa/farmacología , Permeabilidad
11.
Biochim Biophys Acta ; 1814(9): 1146-53, 2011 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-21621654

RESUMEN

Irreversible accumulation of protein aggregates represents an important problem both in vivo and in vitro. The aggregation of proteins is of critical importance in a wide variety of biomedical situations, ranging from diseases (such as Alzheimer's and Parkinson's diseases) to the production (e.g. inclusion bodies), stability, storage and delivery of protein drugs. ß-Cyclodextrin (ß-CD) is a circular heptasaccharide characterized by a hydrophilic exterior and a hydrophobic interior ring structure. In this research, we studied the effects of a chemically modified ß-CD (BCD07056), on the aggregating and refolding properties of BlaPChBD, a hybrid protein obtained by inserting the chitin binding domain of the human macrophage chitotriosidase into the class A ß-lactamase BlaP from Bacillus licheniformis 749/I during its thermal denaturation. The results show that BCD07056 strongly increases the refolding yield of BlaPChBD after thermal denaturation and constitutes an excellent additive to stabilize the protein over time at room temperature. Our data suggest that BCD07056 acts early in the denaturation process by preventing the formation of an intermediate which leads to an aggregated state. Finally, the role of ß-CD derivatives on the stability of proteins is discussed.


Asunto(s)
Quitina/química , Proteínas Recombinantes de Fusión/química , beta-Ciclodextrinas/química , beta-Lactamasas/química , Estabilidad de Enzimas , Desnaturalización Proteica , Pliegue de Proteína
12.
Proc Natl Acad Sci U S A ; 105(44): 16876-81, 2008 Nov 04.
Artículo en Inglés | MEDLINE | ID: mdl-18971341

RESUMEN

We solved the crystal structure of a secreted protein, EXLX1, encoded by the yoaJ gene of Bacillus subtilis. Its structure is remarkably similar to that of plant beta-expansins (group 1 grass pollen allergens), consisting of 2 tightly packed domains (D1, D2) with a potential polysaccharide-binding surface spanning the 2 domains. Domain D1 has a double-psi beta-barrel fold with partial conservation of the catalytic site found in family 45 glycosyl hydrolases and in the MltA family of lytic transglycosylases. Domain D2 has an Ig-like fold similar to group 2/3 grass pollen allergens, with structural features similar to a type A carbohydrate-binding domain. EXLX1 bound to plant cell walls, cellulose, and peptidoglycan, but it lacked lytic activity against a variety of plant cell wall polysaccharides and peptidoglycan. EXLX1 promoted plant cell wall extension similar to, but 10 times weaker than, plant beta-expansins, which synergistically enhanced EXLX1 activity. Deletion of the gene encoding EXLX1 did not affect growth or peptidoglycan composition of B. subtilis in liquid medium, but slowed lysis upon osmotic shock and greatly reduced the ability of the bacterium to colonize maize roots. The presence of EXLX1 homologs in a small but diverse set of plant pathogens further supports a role in plant-bacterial interactions. Because plant expansins have proved difficult to express in active form in heterologous systems, the discovery of a bacterial homolog opens the door for detailed structural studies of expansin function.


Asunto(s)
Bacillus subtilis/metabolismo , Proteínas Bacterianas/química , Raíces de Plantas/microbiología , Secuencias de Aminoácidos , Secuencia de Aminoácidos , Pared Celular/metabolismo , Cristalografía por Rayos X , Genes Bacterianos , Modelos Moleculares , Datos de Secuencia Molecular , Estructura Secundaria de Proteína , Alineación de Secuencia , Zea mays/metabolismo
13.
J Mol Biol ; 374(1): 170-85, 2007 Nov 16.
Artículo en Inglés | MEDLINE | ID: mdl-17916363

RESUMEN

The major allergen Der p 1 of the house dust mite Dermatophagoides pteronyssinus is a papain-like cysteine protease (CA1) produced as an inactive precursor and associated with allergic diseases. The propeptide of Der p 1 exhibits a specific fold that makes it unique in the CA1 propeptide family. In this study, we investigated the activation steps involved in the maturation of the recombinant protease Der p 1 expressed in Pichia pastoris and the interaction of the full-length and truncated soluble propeptides with their parent enzyme in terms of activity inhibition and BIAcore interaction analysis. According to our results, the activation of protease Der p 1 is a multistep mechanism that is characterized by at least two intermediates. The propeptide strongly inhibits unglycosylated and glycosylated recombinant Der p 1 (K(D)=7 nM) at neutral pH. This inhibition is pH dependent. It decreases from pH 7 to pH 4 and can be related to conformational changes of the propeptide characterized by an increase of its flexibility and formation of a molten globule state. Our results indicate that activation of the zymogen at pH 4 is a compromise between activity preservation and propeptide unfolding.


Asunto(s)
Antígenos Dermatofagoides/metabolismo , Fragmentos de Péptidos/química , Fragmentos de Péptidos/farmacología , Pliegue de Proteína , Animales , Antígenos Dermatofagoides/genética , Antígenos Dermatofagoides/inmunología , Proteínas de Artrópodos , Dicroismo Circular , Simulación por Computador , Cisteína Endopeptidasas , Dermatophagoides pteronyssinus/enzimología , Dermatophagoides pteronyssinus/inmunología , Precursores Enzimáticos , Fluorescencia , Glicosilación , Concentración de Iones de Hidrógeno , Pichia/genética , Pichia/metabolismo , Procesamiento Proteico-Postraduccional , Proteínas Recombinantes , Resonancia por Plasmón de Superficie
14.
Protein Sci ; 16(10): 2260-71, 2007 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-17893363

RESUMEN

Using genetic engineering technologies, the chitin-binding domain (ChBD) of the human macrophage chitotriosidase has been inserted into the host protein BlaP, a class A beta-lactamase produced by Bacillus licheniformis. The product of this construction behaved as a soluble chimeric protein that conserves both the capacity to bind chitin and to hydrolyze beta-lactam moiety. Here we describe the biochemical and biophysical properties of this protein (BlaPChBD). This work contributes to a better understanding of the reciprocal structural and functional effects of the insertion on the host protein scaffold and the heterologous structured protein fragments. The use of BlaP as a protein carrier represents an efficient approach to the functional study of heterologous protein fragments.


Asunto(s)
Bacillus/enzimología , Proteínas Bacterianas/química , Proteínas Recombinantes de Fusión/química , beta-Lactamasas/química , Proteínas Bacterianas/genética , Quitina/metabolismo , Estabilidad de Enzimas , Hexosaminidasas/química , Modelos Moleculares , Desnaturalización Proteica , Estructura Terciaria de Proteína , beta-Lactamasas/genética
15.
J Immunol Methods ; 320(1-2): 81-93, 2007 Mar 30.
Artículo en Inglés | MEDLINE | ID: mdl-17276454

RESUMEN

Mapping of epitopes is a crucial step for the study of immune pathways, the engineering of vaccines and the development of immunoassays. In this work, the Bacillus licheniformis beta-lactamase BlaP has been engineered to display heterologous polypeptides in a permissive and solvent-exposed loop. When combined with phage display, this modified enzyme can be used for epitope mapping by cloning random gene fragments. The procedure presented in this paper allows the selection of large infectious phage libraries with high diversity and efficient beta-lactamase activities. A useful aspect of the proposed technique results from the possibility of using the beta-lactamase activity carried by phages to evaluate the proportion of immobilised phages during the successive enrichment steps of the library or competition experiments with the selected phages. Another advantage of the technique derives from the fact that the epitope is selected as a bifunctional hybrid protein, which can be overproduced and purified. The resulting recombinant protein associates an epitope with a specific and efficient enzymatic activity. This constitutes an original tool for immunoassay development. A virus influenza hemagglutinin (HA1)-gene fragment library has been generated with this system and used to identify a linear epitope.


Asunto(s)
Mapeo Epitopo/métodos , Inmunoensayo/métodos , Biblioteca de Péptidos , beta-Lactamasas/inmunología , Secuencia de Aminoácidos , Bacteriófagos/genética , Dominio Catalítico , Relación Dosis-Respuesta a Droga , Ensayo de Inmunoadsorción Enzimática , Epítopos/inmunología , Glicoproteínas Hemaglutininas del Virus de la Influenza/genética , Datos de Secuencia Molecular , Fragmentos de Péptidos , Ingeniería de Proteínas , Estructura Terciaria de Proteína
16.
Protein Sci ; 14(9): 2296-303, 2005 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-16131658

RESUMEN

The serine penicillin-recognizing proteins have been extensively studied. They show a wide range of substrate specificities accompanied by multidomain features. Their adaptation capacity has resulted in the emergence of pathogenic bacteria resistant to beta-lactam antibiotics. The most divergent enzymatic activities in this protein family are those of the Ochrobactrum anthropi D-aminopeptidase and of the Streptomyces R61 D,D-carboxypeptidase/transpeptidase. With the help of structural data, we have attempted to identify the factors responsible for this opposite specificity. A loop deletion mutant of the Ochrobactrum anthropi D-aminopeptidase lost its original activity in favor of a new penicillin-binding activity. D-aminopeptidase activity of the deletion mutant can be restored by complementation with another deletion mutant corresponding to the noncatalytic domain of the wild-type enzyme. By a second step site-directed mutagenesis, the specificity of the Ochrobactrum anthropi D-aminopeptidase was inverted to a D,D-carboxypeptidase specificity. These results imply a core enzyme with high diversity potential surrounded by specificity modulators. It is the first example of drastic specificity change in the serine penicillin-recognizing proteins. These results open new perspectives in the conception of new enzymes with nonnatural specificities. The structure/specificity relationship in the serine penicillin-recognizing proteins are discussed.


Asunto(s)
Aminopeptidasas/metabolismo , Ochrobactrum anthropi/enzimología , D-Ala-D-Ala Carboxipeptidasa de Tipo Serina/metabolismo , Aminopeptidasas/química , Aminopeptidasas/genética , Sitios de Unión , Mutagénesis Sitio-Dirigida , Proteínas de Unión a las Penicilinas/genética , Proteínas de Unión a las Penicilinas/metabolismo , Conformación Proteica , Ingeniería de Proteínas/métodos , D-Ala-D-Ala Carboxipeptidasa de Tipo Serina/química , D-Ala-D-Ala Carboxipeptidasa de Tipo Serina/genética , Streptomyces/enzimología , Relación Estructura-Actividad , Especificidad por Sustrato
17.
Appl Environ Microbiol ; 70(12): 7241-50, 2004 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-15574923

RESUMEN

The novel method described in this paper combines the use of blaI, which encodes a repressor involved in Bacillus licheniformis BlaP beta-lactamase regulation, an antibiotic resistance gene, and a B. subtilis strain (BS1541) that is conditionally auxotrophic for lysine. We constructed a BlaI cassette containing blaI and the spectinomycin resistance genes and two short direct repeat DNA sequences, one at each extremity of the cassette. The BS1541 strain was obtained by replacing the B. subtilis P(lysA) promoter with that of the P(blaP) beta-lactamase promoter. In the resulting strain, the cloning of the blaI repressor gene confers lysine auxotrophy to BS1541. After integration of the BlaI cassette into the chromosome of a conditionally lys-auxotrophic (BS1541) strain by homologous recombination and positive selection for spectinomycin resistance, the eviction of the BlaI cassette was achieved by single crossover between the two short direct repeat sequences. This strategy was successfully used to inactivate a single gene and to introduce a gene of interest in the Bacillus chromosome. In both cases the resulting strains are free of selection marker. This allows the use of the BlaI cassette to repeatedly further modify the Bacillus chromosome.


Asunto(s)
Bacillus subtilis/genética , Regulación Bacteriana de la Expresión Génica , Ingeniería Genética/métodos , Lisina/metabolismo , Recombinación Genética , Proteínas Represoras/metabolismo , beta-Lactamasas/genética , Antibacterianos/farmacología , Proteínas Bacterianas/genética , Proteínas Bacterianas/metabolismo , Farmacorresistencia Bacteriana/genética , Marcadores Genéticos , Regiones Promotoras Genéticas , Proteínas Represoras/genética , Selección Genética , Espectinomicina/farmacología
18.
Biochem J ; 384(Pt 1): 179-90, 2004 Nov 15.
Artículo en Inglés | MEDLINE | ID: mdl-15285720

RESUMEN

The Bacillus licheniformis 749/I BlaI repressor is a prokaryotic regulator that, in the absence of a beta-lactam antibiotic, prevents the transcription of the blaP gene, which encodes the BlaP beta-lactamase. The BlaI repressor is composed of two structural domains. The 82-residue NTD (N-terminal domain) is a DNA-binding domain, and the CTD (C-terminal domain) containing the next 46 residues is a dimerization domain. Recent studies have shown the existence of the monomeric, dimeric and tetrameric forms of BlaI in solution. In the present study, we analyse the equilibrium unfolding of BlaI in the presence of GdmCl (guanidinium chloride) using different techniques: intrinsic and ANS (8-anilinonaphthalene-l-sulphonic acid) fluorescence, far- and near-UV CD spectroscopy, cross-linking, analytical ultracentrifugation, size exclusion chromatography and NMR spectroscopy. In addition, the intact NTD and CTD were purified after proteolysis of BlaI by papain, and their unfolding by GdmCl was also studied. GdmCl-induced equilibrium unfolding was shown to be fully reversible for BlaI and for the two isolated fragments. The results demonstrate that the NTD and CTD of BlaI fold/unfold independently in a four-step process, with no significant co-operative interactions between them. During the first step, the unfolding of the BlaI CTD occurs, followed in the second step by the formation of an 'ANS-bound' intermediate state. Cross-linking and analytical ultracentrifugation experiments suggest that the dissociation of the dimer into two partially unfolded monomers takes place in the third step. Finally, the unfolding of the BlaI NTD occurs at a GdmCl concentration of approx. 4 M. In summary, it is shown that the BlaI CTD is structured, more flexible and less stable than the NTD upon GdmCl denaturation. These results contribute to the characterization of the BlaI dimerization domain (i.e. CTD) involved in the induction process.


Asunto(s)
Bacillus/genética , Regulación Enzimológica de la Expresión Génica/genética , Guanidina/química , Desnaturalización Proteica/efectos de los fármacos , Proteínas Represoras/química , Naftalenosulfonatos de Anilina/química , Proteínas Bacterianas/química , Proteínas Bacterianas/genética , Proteínas Bacterianas/metabolismo , Centrifugación Isopicnica/métodos , Cromatografía en Gel/métodos , Dicroismo Circular/métodos , Reactivos de Enlaces Cruzados/química , ADN Bacteriano/metabolismo , Fluorescencia , Guanidina/metabolismo , Sondas Moleculares/química , Resonancia Magnética Nuclear Biomolecular/métodos , Péptidos/química , Péptidos/genética , Péptidos/metabolismo , Unión Proteica , Pliegue de Proteína , Estructura Terciaria de Proteína , Proteínas Represoras/genética , Proteínas Represoras/metabolismo , Succinimidas/química
19.
J Mol Biol ; 333(4): 711-20, 2003 Oct 31.
Artículo en Inglés | MEDLINE | ID: mdl-14568532

RESUMEN

beta-Lactamase and penicillin-binding protein PBP2' mediate staphylococcal resistance to beta-lactam antibiotics, which are otherwise highly clinically effective. Two repressors (BlaI and MecI) regulate expression of these inducible proteins. Here, we present the first solution structure of the 82 amino acid residue DNA-binding domain of Bacillus licheniformis BlaI which is very similar in primary sequence to the medically significant Staphyloccocal BlaI and MecI proteins. This structure is composed of a compact core of three alpha-helices and a three-stranded beta-sheet typical of the winged helix protein (WHP) family. The protein/DNA complex was studied by NMR chemical shift comparison between the free and complexed forms of BlaI. Residues involved in DNA interaction were identified and a WHP canonical model of interaction with the operators is proposed. In this model, specific contacts occur between the base-pairs of the TACA motif and conserved amino acid residues of the repressor helix H3. These results help toward understanding the repression and induction mechanism of the genes coding for beta-lactamase and PBP2'.


Asunto(s)
Proteínas Bacterianas/química , Proteínas Represoras/química , Resistencia betalactámica/genética , Secuencia de Aminoácidos , Bacillus/química , Proteínas Bacterianas/genética , Proteínas Bacterianas/metabolismo , Proteínas Portadoras/química , Proteínas Portadoras/metabolismo , Regulación Bacteriana de la Expresión Génica , Genes Bacterianos , Hexosiltransferasas/química , Hexosiltransferasas/metabolismo , Modelos Moleculares , Datos de Secuencia Molecular , Muramoilpentapéptido Carboxipeptidasa/química , Muramoilpentapéptido Carboxipeptidasa/metabolismo , Resonancia Magnética Nuclear Biomolecular , Proteínas de Unión a las Penicilinas , Peptidil Transferasas/química , Peptidil Transferasas/metabolismo , Proteínas Represoras/genética , Proteínas Represoras/metabolismo , Alineación de Secuencia , beta-Lactamasas/química , beta-Lactamasas/metabolismo
20.
J Biol Chem ; 278(19): 16482-7, 2003 May 09.
Artículo en Inglés | MEDLINE | ID: mdl-12615920

RESUMEN

In the absence of penicillin, the beta-lactamase encoding gene blaP of Bacillus licheniformis 749/I is negatively regulated by the transcriptional repressor BlaI. Three palindromic operator regions are recognized by BlaI: two in the blaP promoter (OP1 and OP2) and one (OP3) in the promoter of the blaI-blaR1 operon. In this study, the dissociation constant of the purified BlaI dimer was estimated at 25 microm by equilibrium ultracentrifugation. Quantitative Western blot analysis indicates that the intracellular concentrations of BlaI in B. licheniformis 749/I and Bacillus subtilis transformed by a multicopy plasmid harboring the beta-lactamase locus (blaP-blaI-blaR1) were lower than (1.9 microm) or in the same range as (75 microm) the dissociation constant, respectively. This suggests that BlaI is partially dimeric in the cytoplasm of these strains and interacts in vivo with its operators as a preformed dimer. This hypothesis is supported by band shift assays on an operator containing a randomized half-operator sequence. The global dissociation constants of the operator-BlaI dimer complexes were measured by band shift assays and estimated as K(d)(OP1) = 1.7 +/- 0.5 10(-15) m(2), K(d)(OP2) = 3.3 +/- 0.9 10(-15) m(2), and K(d)(OP3) = 10.5 +/- 2.5 10(-15) m(2). The role of the DNA binding properties of BlaI on the beta-lactamase regulation is discussed.


Asunto(s)
Bacillus/metabolismo , Proteínas Bacterianas/química , Proteínas Bacterianas/metabolismo , Proteínas de Unión al ADN/química , Proteínas de Unión al ADN/metabolismo , Dimerización , Unión Proteica , beta-Lactamasas/química , beta-Lactamasas/metabolismo
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