Transcriptomic profiling permits the identification of pollutant sources and effects in ambient water samples.

Contaminant exposure is one possible contributor to population declines of endangered fish species in the Sacramento-San Joaquin Estuary, California, including the endangered delta smelt (Hypomesus transpacificus). Herein we investigated transcriptional responses in larval delta smelt resulting from exposure to water samples collected at the Department of Water Resources Field Station at Hood, a site of concern, situated upstream of known delta smelt habitat and spawning sites and downstream of the Sacramento Regional Wastewater Treatment Plant (SRWTP). Microarray assessments indicate impacts on energy metabolism, DNA repair mechanisms and RNA processing, the immune system, development and muscle function. Transcription responses of fish exposed to water samples from Hood were compared with exposures to 9% effluent samples from SRWTP, water from the Sacramento River at Garcia Bend (SRGB), upstream of the effluent discharge, and SRGB water spiked with 2mg/L total ammonium (9% effluent equivalent). Results indicate that transcriptomic profiles from Hood are similar to 9% SRWTP effluent and ammonium spiked SRGB water, but significantly different from SRGB. SRGB samples however were also significantly different from laboratory controls, suggesting that SRWTP effluent is not solely responsible for the responses determined at Hood, that ammonium exposure likely enhances the effect of multiple-contaminant exposures, and that the observed mortality at Hood is due to the combination of both effluent discharge and contaminants arising from upstream of the tested sites.

Spatial and habitat-based variations in total and methyl mercury concentrations in surficial sediments in the San Francisco Bay-Delta.

Recent studies indicate significant amounts of mercury (Hg) are annually transported into the San Francisco Bay-Delta (Bay-Delta) as a result of historic gold and Hg mining activities. We examined temporal and spatial variation in concentrations of total Hg (Hg(T)) and monomethylmercury (MMHg) in surficial sediments of various ecosystem types in the Bay-Delta. We sampled surficial sediments across the Bay-Delta system and found Hg(T) sediment concentrations in the central Delta were generally 100-200 ng g(-1) and increased westward through Suisun Bay to 250-350 ng g(-1). MMHg concentrations in the central Delta were between 1 and 3 ng g(-1), while those in sediments in the perimeter waterways and adjacent bays were less than 1 ng g(-1). Six sites were monitored monthly for over a year to identify seasonal changes in Hg sediment concentrations. Hgtau sediment concentrations ranged from 48 to 382 ng g(-1) and varied as a function of location not season. However, MMHg concentrations varied seasonally, increasing from 1 ng g(-1) during winter months to 6 ng g(-1) during spring and summer. Transects conducted at three marshes in the central Delta revealed MMHg sediment concentrations of 4-8 ng g(-1) at the interior and 2 ng g(-1) at the exterior of the marshes. Habitat type was a major factor controlling MMHg concentration and the MMHg to Hg(T) ratio in sediments of the Bay-Delta. MMHg was significantly correlated to Hgt (r2 = 0.49) in marsh sediments.