Characterizing Chemical, Environmental, and Stimulated Subcellular Physical Characteristics of Size-Fractionated PMs Down to PM0.1.

Air pollution, especially particulate matter (PM), is a significant environmental pollution worldwide. Studying the chemical, environmental, and life-related cellular physical characteristics of size-fractionated PMs is important because of their different degrees of harmful effects on human respiratory tracts and organ systems, causing severe diseases. This study evaluates the chemical components of size-fractionated PMs down to PM0.1 collected during a biomass-burning episode, including elemental/organic carbon and trace elements. Single particle sizes and distributions of PM0.1, PM0.5-0.1, PM1.0-0.5, and PM2.5-1.0 were analyzed by scanning electron microscopy and Zeta sizer. Two commonly used cell lines, e.g., HeLa and Cos7 cells, and two respiratory-related cell lines including lung cancer/normal cells were utilized for cell cytotoxicity experiments, revealing the key effects of particle sizes and concentrations. A high-speed scanning ion conductance microscope explored particle-stimulated subcellular physical characteristics for all cell lines in dynamics, including surface roughness (SR) and elastic modulus (E). The statistical results of SR showed distinct features among different particle sizes and cell types while a E reduction was universally found. This work provides a comprehensive understanding of the chemical, environmental, and cellular physical characteristics of size-fractionated PMs and sheds light on the necessity of controlling small-sized PM exposures.

Protocol for live imaging of intracellular nanoscale structures using atomic force microscopy with nanoneedle probes.

Atomic force microscopy (AFM) is capable of nanoscale imaging but has so far only been used on cell surfaces when applied to a living cell. Here, we describe a step-by-step protocol for nanoendoscopy-AFM, which enables the imaging of nanoscale structures inside living cells. The protocol consists of cell staining, fabrication of the nanoneedle probes, observation inside living cells using 2D and 3D nanoendoscopy-AFM, and visualization of the 3D data. For complete details on the use and execution of this protocol, please refer to Penedo et al. (2021)1 and Penedo et al. (2021).2.

Unraveling the Host-Selective Toxic Interaction of Cassiicolin with Lipid Membranes and Its Cytotoxicity.

Cassiicolin (Cas), a toxin produced by Corynespora cassiicola, is responsible for Corynespora leaf fall disease in susceptible rubber trees. Currently, the molecular mechanisms of the cytotoxicity of Cas and its host selectivity have not been fully elucidated. Here, we analyzed the binding of Cas1 and Cas2 to membranes consisting of different plant lipids and their membrane disruption activities. Using high-speed atomic force microscopy and confocal microscopy, we reveal that the binding and disruption activities of Cas1 and Cas2 on lipid membranes are strongly dependent on the specific plant lipids. The negative phospholipids, glycerolipids, and sterols are more sensitive to membrane damage caused by Cas1 and Cas2 than neutral phospholipids and betaine lipids. Mature Cas1 and Cas2 play an essential role in causing membrane disruption. Cytotoxicity tests on rubber leaves of Rubber Research Institute of Vietnam (RRIV) 1, RRIV 4, and Prang Besar (PB) 255 clones suggest that the toxins cause necrosis of rubber leaves, except for the strong resistance of PB 255 against Cas2. Cryogenic scanning electron microscopy analyses of necrotic leaf tissues treated with Cas1 confirm that cytoplasmic membranes are vulnerable to the toxin. Thus, the host selectivity of Cas toxin is attained by the lipid-dependent binding activity of Cas to the membrane, and the cytotoxicity of Cas arises from its ability to form biofilm-like structures and to disrupt specific membranes.

Visualizing intracellular nanostructures of living cells by nanoendoscopy-AFM.

Atomic force microscopy (AFM) is the only technique that allows label-free imaging of nanoscale biomolecular dynamics, playing a crucial role in solving biological questions that cannot be addressed by other major bioimaging tools (fluorescence or electron microscopy). However, such imaging is possible only for systems either extracted from cells or reconstructed on solid substrates. Thus, nanodynamics inside living cells largely remain inaccessible with the current nanoimaging techniques. Here, we overcome this limitation by nanoendoscopy-AFM, where a needle-like nanoprobe is inserted into a living cell, presenting actin fiber three-dimensional (3D) maps, and 2D nanodynamics of the membrane inner scaffold, resulting in undetectable changes in cell viability. Unlike previous AFM methods, the nanoprobe directly accesses the target intracellular components, exploiting all the AFM capabilities, such as high-resolution imaging, nanomechanical mapping, and molecular recognition. These features should greatly expand the range of intracellular structures observable in living cells.

Cell penetration efficiency analysis of different atomic force microscopy nanoneedles into living cells.

Over the last decade, nanoneedle-based systems have demonstrated to be extremely useful in cell biology. They can be used as nanotools for drug delivery, biosensing or biomolecular recognition inside cells; or they can be employed to select and sort in parallel a large number of living cells. When using these nanoprobes, the most important requirement is to minimize the cell damage, reducing the forces and indentation lengths needed to penetrate the cell membrane. This is normally achieved by reducing the diameter of the nanoneedles. However, several studies have shown that nanoneedles with a flat tip display lower penetration forces and indentation lengths. In this work, we have tested different nanoneedle shapes and diameters to reduce the force and the indentation length needed to penetrate the cell membrane, demonstrating that ultra-thin and sharp nanoprobes can further reduce them, consequently minimizing the cell damage.

Geometrical Characterization of Glass Nanopipettes with Sub-10 nm Pore Diameter by Transmission Electron Microscopy.

Glass nanopipettes are widely used for various applications in nanosciences. In most of the applications, it is important to characterize their geometrical parameters, such as the aperture size and the inner cone angle at the tip region. For nanopipettes with sub-10 nm aperture and thin wall thickness, transmission electron microscopy (TEM) must be most instrumental in their precise geometrical measurement. However, this measurement has remained a challenge because heat generated by electron beam irradiation would largely deform sub-10 nm nanopipettes. Here, we provide methods for preparing TEM specimens that do not cause deformation of such tiny nanopipettes.

Photothermal excitation efficiency enhancement of cantilevers by electron beam deposition of amorphous carbon thin films.

In recent years, the atomic force microscope has proven to be a powerful tool for studying biological systems, mainly for its capability to measure in liquids with nanoscale resolution. Measuring tissues, cells or proteins in their physiological conditions gives us access to valuable information about their real 'in vivo' structure, dynamics and functionality which could then fuel disruptive medical and biological applications. The main problem faced by the atomic force microscope when working in liquid environments is the difficulty to generate clear cantilever resonance spectra, essential for stable operation and for high resolution imaging. Photothermal actuation overcomes this problem, as it generates clear resonance spectra free from spurious peaks. However, relatively high laser powers are required to achieve the desired cantilever oscillation amplitude, which could potentially damage biological samples. In this study, we demonstrate that the photothermal excitation efficiency can be enhanced by coating the cantilever with a thin amorphous carbon layer to increase the heat absorption from the laser, reducing the required excitation laser power and minimizing the damage to biological samples.

Architecture of Human IgM in Complex with P. falciparum Erythrocyte Membrane Protein 1.

Plasmodium falciparum virulence is associated with sequestration of infected erythrocytes. Microvascular binding mediated by PfEMP1 in complex with non-immune immunoglobulin M (IgM) is common among parasites that cause both severe childhood malaria and pregnancy-associated malaria. Here, we present cryo-molecular electron tomography structures of human IgM, PfEMP1 and their complex. Three-dimensional reconstructions of IgM reveal that it has a dome-like core, randomly oriented Fab2s units, and the overall shape of a turtle. PfEMP1 is a C- shaped molecule with a flexible N terminus followed by an arc-shaped backbone and a bulky C terminus that interacts with IgM. Our data demonstrate that the PfEMP1 binding pockets on IgM overlap with those of C1q, and the bulkiness of PfEMP1 limits the capacity of IgM to interact with PfEMP1. We suggest that P. falciparum exploits IgM to cluster PfEMP1 into an organized matrix to augment its affinity to host cell receptors.

Formation of crystal-like structures and branched networks from nonionic spherical micelles.

Crystal-like structures at nano and micron scales have promise for purification and confined reactions, and as starting points for fabricating highly ordered crystals for protein engineering and drug discovery applications. However, developing controlled crystallization techniques from batch processes remain challenging. We show that neutrally charged nanoscale spherical micelles from biocompatible nonionic surfactant solutions can evolve into nano- and micro-sized branched networks and crystal-like structures. This occurs under simple combinations of temperature and flow conditions. Our findings not only suggest new opportunities for developing controlled universal crystallization and encapsulation procedures that are sensitive to ionic environments and high temperatures, but also open up new pathways for accelerating drug discovery processes, which are of tremendous interest to pharmaceutical and biotechnological industries.

Photochemical fabrication of silver nanostructures at the solid-liquid interface using a recyclable photosensitized reduction process.

Photochemical synthesis of metal nanostructures through photosensitized reduction of metal sources is a powerful method in a wide variety of environments, because light can selectively promote the desired reaction without damaging the surrounding environment. A drawback of the method is that most organic photosensitizers are disposable and consumed during the photochemical reactions and as a consequence a much larger amount of photosensitizer than that of the metal source is usually required, and therefore, the photosensitized reduction method is wasteful in terms of the sensitizer. In the present work, we propose a new photochemical synthetic method using a recyclable photosensitizer and applied it to fabricate Ag nanostructures at the solid-liquid interface. The photosensitized reduction of Ag ion at the solid-liquid interface resulted in the formation of unique Ag nanostructures (nanowires or plates) without the use of templates or stabilizing agents. The relation between the morphology and several external contributing factors, such as solvent polarity and interaction between the substrate and crystal phase, was discussed.

Ionic liquids of bis(alkylethylenediamine)silver(I) salts and the formation of silver(0) nanoparticles from the ionic liquid system.

We have prepared novel ionic liquids of bis(N-2-ethylhexylethylenediamine)silver(I) nitrate ([Ag(eth-hex-en)(2)]NO(3) and bis(N-hexylethylenediamine)silver(I) hexafluorophosphate ([Ag(hex-en)(2)]PF(6)), which have transition points at -54 and -6 degrees C, respectively. Below these transition temperatures, both the silver complexes assume amorphous states, in which the extent of the vitrification is larger for the eth-hex-en complex than for the hex-en complex. The diffusion coefficients of both the complex cations, measured between 30 (or 35) and 70 degrees C, are largely dependent on temperature; the dependence is particularly large in the case of the eth-hex-en complex cation below 40 degrees C. Small-angle X-ray scattering studies showed that the bilayer structure of the metal complex is formed in the liquid state for both the silver complexes. A direct observation of the yellowish [Ag(eth-hex-en)(2)]NO(3) liquid by transmission electron microscopy (TEM) indicates the presence of nanostructures, as a microemulsion, of less than 5 nm. Such structures were not clearly observed in the [Ag(hex-en)(2)]PF(6) liquid. Although the [Ag(eth-hex-en)(2)]NO(3) liquid is sparingly soluble in bulk water, it readily incorporates a small amount of water up to [water]/[metal complex] = 7:1. Homogeneous and uniformly sized silver(0) nanoparticles in water were created by the reduction of the [Ag(eth-hex-en)(2)]NO(3) liquid with aqueous NaBH(4), whereas silver(0) nanoparticles were not formed from the [Ag(hex-en)(2)]PF(6) liquid in the same way.

Precise synthesis of poly(macromonomer)s containing sugars by repetitive ROMP and their attachments to poly(ethylene glycol): synthesis, TEM analysis and their properties as amphiphilic block fragments.

Various poly(macromonomer)s (PMMs) have been prepared by a repeating ring opening metathesis polymerization (ROMP) technique using the well-defined molybdenum initiators of the type, [Mo(CHCMe(2)Ph)(NAr)(OR)(2)] with OR=OCMe(3), OCMeC(CF(3))(2); Ar=2,6-iPr(2)C(6)H(3), 2,6-Me(2)C(6)H(3). The synthetic strategy is based on the polymerization of norbornene and its derivatives affording di- and triblock side chains bearing sugars (mannose, galactose, glucose etc.), linked via O- (ester), and glycosidase resistant C- (isoxazoline) glycosides. The efficient placement of norbornene units on the side chain termini and their conversion into PMMs, facilitated by the Mo alkylidenes, proceeded in a living manner with the quantitative initiation. The methodology was applied to prepare poly(macromonomer)-graft-PEG [PEG: poly(ethylene glycol)], by the attachment of a pseudo phenol terminus on the PMM main chain to PEG-Ms(2) [MsO(CH(2)CH(2)O)(n)Ms, Ms=MeSO(2)] using a "grafting to" approach. Removal of the acetal protecting groups from the sugar coating of a variety of supramolecular structures including PMMs, linear amphiphilic block copolymers (ABC) and a PMM-graft-PEGby using trifluroacetic acid/water (9:1), and suspension in water, prompted the spontaneous formation of spherical architectures by self-assembly of the amphiphilic PMMs as observed by transmission electron microscopy (TEM). The ability to uptake the hydrophobic dye (Nile Red) into the micellar cores of a variety of amphiphilic polymeric fragments is a significant step towards the production of sugar-coated nanospheres for cell-targeting biomimetic applications.