BatFly: A database of Neotropical bat-fly interactions.

Global changes have increased the risk of emerging infectious diseases, which can be prevented or mitigated by studying host-parasite interactions, among other measures. Bats and their ectoparasitic flies of the families Streblidae and Nycteribiidae are an excellent study model but, so far, our knowledge has been restricted to fragmented records at a local scale. To help boost research, we assembled a data set of bat-fly interactions from 174 studies published between 1904 and 2022 plus three original data sets. Altogether, these studies were carried out at 650 sites in the Neotropics, mainly distributed in Mexico, Brazil, Argentina, southern USA, and Colombia, among other countries. In total, our data set contains 3984 interaction records between 237 bat species and 255 fly species. The bat species with the largest number of recorded interactions were Carollia perspicillata (357), Artibeus jamaicensis (263), and Artibeus lituratus (228). The fly species with the largest number of recorded interactions were Trichobius joblingi (256), Megistopoda aranea (235), and Megistopoda proxima (215). The interaction data were extracted, filtered, taxonomically harmonized, and made available in a tidy format together with linked data on bat population, fly population, study reference, sampling methods and geographic information from the study sites. This interconnected structure enables the expansion of information for each interaction record, encompassing where and how each interaction occurred, as well as the number of bats and flies involved. We expect BatFly to open new avenues for research focused on different levels of ecological organization and spatial scales. It will help consolidate knowledge about ecological specialization, resource distribution, pathogen transmission, and the drivers of parasite prevalence over a broad spatial range. It may also help to answer key questions such as: Are there differences in fly prevalence or mean infestation across Neotropical ecoregions? What ecological drivers explain those differences? How do specialization patterns vary among fly species in the Neotropics? Furthermore, we expect BatFly to inspire research aimed at understanding how climate and land-use changes may impact host-parasite interactions and disease outbreaks. This kind of research may help us reach Sustainable Development Goal 3, Good Health and Wellbeing, outlined by the United Nations. The data are released under a Creative Commons Attribution 4.0 International License.

Avoiding novel, unwanted interactions among species to decrease risk of zoonoses.

Circumstances that precipitate interactions among species that have never interacted during their evolutionary histories create ideal conditions for the generation of zoonoses. Zoonotic diseases have caused some of the most devastating epidemics in human history. Contact among species that come from different ecosystems or regions creates the risk of zoonoses. In certain situations, humans are generating and promoting conditions that contribute to the creation of infectious diseases and zoonoses. These conditions lead to interactions between wildlife species that have hitherto not interacted under normal circumstances. I call for recognition of the zoonotic potential that novel and unwanted interactions have; identification of these new interactions that are occurring among wild animals, domestic animals, and humans; and efforts to stop these kinds of interactions because they can give rise to zoonotic outbreaks. Live animal markets, the exotic pet trade, illegal wildlife trade, human use and consumption of wild animals, invasive non-native species, releasing of exotic pets, and human encroachment in natural areas are among the activities that cause the most interactions among wild species, domestic species, and humans. These activities should not occur and must be controlled efficiently to prevent future epidemic zoonoses. Society must develop a keen ability to identify these unnatural interactions and prevent them. Controlling these interactions and efficiently addressing their causal factors will benefit human health and, in some cases, lead to positive environmental, ethical, and socioeconomic outcomes. Until these actions are taken, humanity will face future zoonoses and zoonotic pandemic.

Evitar interacciones novedosas e indeseadas entre especies para disminuir el riesgo de zoonosis Resumen Las circunstancias que promueven interacciones entre especies que nunca han interactuado durante sus historias evolutivas crean condiciones ideales para la generación de zoonosis. Las enfermedades zoonóticas han causado algunas de las epidemias más devastadoras en la historia de la humanidad. El contacto entre especies que provienen de diferentes ecosistemas o regiones crea el riesgo de zoonosis. En determinadas situaciones, los seres humanos estamos generando y promoviendo condiciones que contribuyen a la creación de enfermedades infecciosas y zoonosis. Estas condiciones conducen a interacciones entre especies silvestres que hasta ahora no habían interactuado en circunstancias normales. Hago un llamado para que se reconozca el potencial zoonótico que tienen las interacciones nuevas y no deseadas; que se identifiquen estas nuevas interacciones que provocamos entre animales silvestres, animales domésticos y humanos; y esforzarnos para detener este tipo de interacciones porque pueden dar lugar a brotes zoonóticos. Los mercados de animales vivos, el comercio de mascotas exóticas, el comercio ilegal de vida silvestre, el uso y consumo humano de animales silvestres, las especies invasoras no nativas, la liberación de mascotas exóticas y la invasión humana en áreas naturales, se encuentran entre las actividades que causan la mayor cantidad de interacciones entre especies silvestres, especies domésticas y humanos. Estas actividades no deberían ocurrir y deben controlarse eficientemente para prevenir futuras zoonosis epidémicas. La sociedad debe desarrollar una gran capacidad para identificar estas interacciones antinaturales y prevenirlas. Controlar estas interacciones y abordar eficientemente sus factores causales beneficiará la salud humana y, en algunos casos, conducirá a resultados ambientales, éticos y socioeconómicos positivos. Mientras estas medidas no se tomen, la humanidad enfrentará futuras zoonosis y pandemias zoonóticas.

Live animal markets: Identifying the origins of emerging infectious diseases.

Emerging infectious diseases (EIDs) of zoonotic origin appear, affect a population and can spread rapidly. At the beginning of 2020, the World Health Organization pronounced an emergency public health advisory because of the SARS-CoV-2 coronavirus outbreak, and declared that COVID-19 had reached the level of a pandemic, rapidly spreading around the world. In order to identify one of the origins of EIDs, and propose some control alternatives, an extensive review was conducted of the available literature. The problem can originate in live animal markets, where animal species of all kinds, from different origins, ecosystems, and taxonomic groups are caged and crowded together, sharing the same unsanitary and unnatural space, food, water, and also the ecto- and endoparasitic vectors of disease. They defecate on each other, leading to the exchange of pathogenic and parasitic microorganisms, forcing interactions among species that should never happen. This is the ideal scenario for causing zoonoses and outbreaks of EIDs. We must start by stopping the illegal collection and sale of wild animals in markets. The destruction of ecosystems and forests also promote zoonoses and outbreaks of EIDs. Science and knowledge should be the basis of the decisions and policies for the development of management strategies. Wildlife belongs in its natural habitat, which must be defended, conserved, and restored at all costs.

Molecular adaptation and convergent evolution of frugivory in Old World and neotropical fruit bats.

Although cases of independent adaptation to the same dietary niche have been documented in mammalian ecology, the molecular correlates of such shifts are seldom known. Here, we used genomewide analyses of molecular evolution to examine two lineages of bats that, from an insectivorous ancestor, have both independently evolved obligate frugivory: the Old World family Pteropodidae and the neotropical subfamily Stenodermatinae. New genome assemblies from two neotropical fruit bats (Artibeus jamaicensis and Sturnira hondurensis) provide a framework for comparisons with Old World fruit bats. Comparative genomics of 10 bat species encompassing dietary diversity across the phylogeny revealed convergent molecular signatures of frugivory in both multigene family evolution and single-copy genes. Evidence for convergent molecular adaptations associated with frugivorous diets includes the composition of three subfamilies of olfactory receptor genes, losses of three bitter taste receptor genes, losses of two digestive enzyme genes and convergent amino acid substitutions in several metabolic genes. By identifying suites of adaptations associated with the convergent evolution of frugivory, our analyses both reveal the extent of molecular mechanisms under selection in dietary shifts and will facilitate future studies of molecular ecology in mammals.

Crumble analysis of the historic sympatric distribution between Dendrortyx macroura and D. barbatus (Aves: Galliformes).

In Mexico, the Long-tailed Wood-Partridge (Dendrortyx macroura) is distributed in the mountains of the Trans-Mexican Volcanic Belt, Sierra Madre del Sur and Sierra Norte de Oaxaca; while the Bearded Wood-Partridge (D. barbatus) is distributed in the Sierra Madre Oriental (SMO). There is a controversial overlap in distribution (sympatry) between these two species (on the Cofre de Perote and Pico de Orizaba volcanoes, SMO and Sierra Norte de Oaxaca), based on the ambiguity and current lack of information regarding the distribution of these two species. In order to disentangle the possible presence of both species in the area of sympatry, we conducted a crumble analysis of the historic knowledge regarding the geographic distribution of both species, based on a review of scientific literature, database records, the specimen examination (in ornithological collections), field work and a reconstruction of the distribution range based on Ecological Niche Modeling. Our results support the presence of only one of these two species in the overlapping area, rejecting the existence of such an area of sympatry between the two species. We discuss alternative hypotheses that could explain the historically reported distribution pattern: 1) an error in the single existing historical record; 2) a possible local extinction of the species and 3) the past existence of interspecific competition that has since been resolved under the principle of competitive exclusion. We propose that the Santo Domingo River in northern Oaxaca and western slope of the Sierra Madre Oriental, mark the distribution limits between these species.

Deforestation Impacts on Bat Functional Diversity in Tropical Landscapes.

Functional diversity is the variability in the functional roles carried out by species within ecosystems. Changes in the environment can affect this component of biodiversity and can, in turn, affect different processes, including some ecosystem services. This study aimed to determine the effect of forest loss on species richness, abundance and functional diversity of Neotropical bats. To this end, we identified six landscapes with increasing loss of forest cover in the Huasteca region of the state of Hidalgo, Mexico. We captured bats in each landscape using mist nets, and calculated functional diversity indices (functional richness and functional evenness) along with species richness and abundance. We analyzed these measures in terms of percent forest cover. We captured 906 bats (Phyllostomidae and Mormoopidae), including 10 genera and 12 species. Species richness, abundance and functional richness per night are positively related with forest cover. Generalized linear models show that species richness, abundance and functional richness per night are significantly related with forest cover, while seasonality had an effect on abundance and functional richness. Neither forest cover nor season had a significant effect on functional evenness. All these findings were consistent across three spatial scales (1, 3 and 5 km radius around sampling sites). The decrease in species, abundance and functional richness of bats with forest loss may have implications for the ecological processes they carry out such as seed dispersal, pollination and insect predation, among others.

Bat-fruit interactions are more specialized in shaded-coffee plantations than in tropical mountain cloud forest fragments.

Forest disturbance causes specialization of plant-frugivore networks and jeopardizes mutualistic interactions through reduction of ecological redundancy. To evaluate how simplification of a forest into an agroecosystem affects plant-disperser mutualistic interactions, we compared bat-fruit interaction indexes of specialization in tropical montane cloud forest fragments (TMCF) and shaded-coffee plantations (SCP). Bat-fruit interactions were surveyed by collection of bat fecal samples. Bat-fruit interactions were more specialized in SCP (mean H2 ' = 0.55) compared to TMCF fragments (mean H2 ' = 0.27), and were negatively correlated to bat abundance in SCP (R = -0.35). The number of shared plant species was higher in the TMCF fragments (mean = 1) compared to the SCP (mean = 0.51) and this was positively correlated to the abundance of frugivorous bats (R= 0.79). The higher specialization in SCP could be explained by lower bat abundance and lower diet overlap among bats. Coffee farmers and conservation policy makers must increase the proportion of land assigned to TMCF within agroecosystem landscapes in order to conserve frugivorous bats and their invaluable seed dispersal service.

Variation and genetic structure in Platanus mexicana (Platanaceae) along riparian altitudinal gradient.

Platanus mexicana is a dominant arboreal species of riparian ecosystems. These ecosystems are associated with altitudinal gradients that can generate genetic differences in the species, especially in the extremes of the distribution. However, studies on the altitudinal effect on genetic variation to riparian species are scarce. In Mexico, the population of P. mexicana along the Colipa River (Veracruz State) grows below its reported minimum altitude range, possibly the lowest where this tree grows. This suggests that altitude might be an important factor in population genetics differentiation. We examined the genetic variation and population structuring at four sites with different altitudes (70, 200, 600 and 1700 m a.s.l.) using ten inter-simple sequence repeats (ISSR) markers. The highest value for Shannon index and Nei's gene diversity was obtained at 1700 m a.s.l. (He = 0.27, Ne = 1.47, I = 0.42) and polymorphism reached the top value at the middle altitude (% p = 88.57). Analysis of molecular variance (AMOVA) and STRUCTURE analysis indicated intrapopulation genetic differentiation. The arithmetic average (UPGMA) dendrogram identified 70 m a.s.l. as the most genetically distant site. The genetic structuring resulted from limited gene flow and genetic drift. This is the first report of genetic variation in populations of P. mexicana in Mexico. This research highlights its importance as a dominant species, and its ecological and evolutionary implications in altitudinal gradients of riparian ecosystems.

Tropical secondary forest management influences frugivorous bat composition, abundance and fruit consumption in Chiapas, Mexico.

Most studies on frugivorous bat assemblages in secondary forests have concentrated on differences among successional stages, and have disregarded the effect of forest management. Secondary forest management practices alter the vegetation structure and fruit availability, important factors associated with differences in frugivorous bat assemblage structure, and fruit consumption and can therefore modify forest succession. Our objective was to elucidate factors (forest structural variables and fruit availability) determining bat diversity, abundance, composition and species-specific abundance of bats in (i) secondary forests managed by Lacandon farmers dominated by Ochroma pyramidale, in (ii) secondary forests without management, and in (iii) mature rain forests in Chiapas, Southern Mexico. Frugivorous bat species diversity (Shannon H') was similar between forest types. However, bat abundance was highest in rain forest and O. pyramidale forests. Bat species composition was different among forest types with more Carollia sowelli and Sturnira lilium captures in O. pyramidale forests. Overall, bat fruit consumption was dominated by early-successional shrubs, highest late-successional fruit consumption was found in rain forests and more bats consumed early-successional shrub fruits in O. pyramidale forests. Ochroma pyramidale forests presented a higher canopy openness, tree height, lower tree density and diversity of fruit than secondary forests. Tree density and canopy openness were negatively correlated with bat species diversity and bat abundance, but bat abundance increased with fruit abundance and tree height. Hence, secondary forest management alters forests' structural characteristics and resource availability, and shapes the frugivorous bat community structure, and thereby the fruit consumption by bats.

Evolution of the sweet taste receptor gene Tas1r2 in bats.

Taste perception is an important component of an animal's fitness. The identification of vertebrate taste receptor genes in the last decade has enabled molecular genetic studies of the evolution of taste perception in the context of the ecology and dietary preferences of organisms. Although such analyses have been conducted in a number of species for bitter taste receptors, a similar analysis of sweet taste receptors is lacking. Here, we survey the sole sweet taste-specific receptor gene Tas1r2 in 42 bat species that represent all major lineages of the order Chiroptera, one of the most diverse groups of mammals in terms of diet. We found that Tas1r2 is under strong purifying selection in the majority of the bats studied, with no significant difference in the strength of the selection between insect eaters and fruit eaters. However, Tas1r2 is a pseudogene in all three vampire bat species and the functional relaxation likely started in their common ancestor, probably due to the exclusive feeding of vampire bats on blood and their reliance on infrared sensors rather than taste perception to locate blood sources. Our survey of available genome sequences, together with previous reports, revealed additional losses of Tas1r2 in horse, cat, chicken, zebra finch, and western clawed frog, indicating that sweet perception is not as conserved as previously thought. Nonetheless, we found no common dietary pattern among the Tas1r2-lacking vertebrates, suggesting different causes for the losses of Tas1r2 in different species. The complexity of the ecological factors that impact the evolution of Tas1r2 calls for a better understanding of the physiological roles of sweet perception in different species.

Opportunity for the study of critical successional processes for the restoration and conservation of mountain forest: The case of mexican pine plantations / Oportunidad para el estudio de procesos críticos sucesionales para la restauración y conservación de bosques de montaña: El caso de las plantaciones de pino en México / Oportunidade para o estudo de processos críticos sucesionais para a restauração e conservação de bosques de montanha: O caso das plantaçãos de pinheiros no México

It has become clear that native species are incorporated naturally under the canopy of many tree plantations. This process of incorporation (facilitation) can be used as an opportunity to create successional models in restoration and species reintroduction projects. The need to incorporate basic ecological information is a critical issue in the process of ecosystem restoration. Pinus is a genus widely used in plantations worldwide. In Mexico, 199 790.4ha are planted with pine each year. Many of these plantations have been established with rehabilitation and conservation goals, and provide an opportunity for restoration through the reintroduction of native species of plants and animals. Because pine species are considered as pioneers in forest successional stages, pine plantations represent natural laboratories that can be used to test scientific hypothesis to strengthen the restoration and reintroduction programs. These plantations also represent an opportunity to apply scientific knowledge in practical field conservation and address the science-policy interface. In this essay, we presented arguments focused on the importance of plantations as areas for experimentation, given the diversity of environments in which they are found, from sea level to high altitudes, as well as the diversity in their structure and composition.

Se ha evidenciado que bajo el dosel de muchas plantaciones forestales se incorporan, de manera natural, especies nativas. Este proceso de incorporación (facilitación), puede ser usado como una oportunidad para crear modelos sucesionales en proyectos de restauración y reintroducción de especies. La necesidad de incorporar información ecológica básica es una cuestión crítica en el proceso de restauración de ecosistemas. Pinus es un género ampliamente usado en plantaciones a nivel mundial. En México, las plantaciones de pino representan 199 790,4ha al año. Muchas de éstas se han establecido con objetivos de rehabilitación y conservación, y constituyen una oportunidad para la restauración a partir de la reintroducción de especies de plantas y animales nativos. Debido a que los pinos son considerados como especies pioneras de la sucesión, las plantaciones de pino representan laboratorios naturales que nos permiten invalidar hipótesis científicas para fortalecer programas de restauración o reintroducción de especies. Estas plantaciones también representan una oportunidad para aplicar el conocimiento científico en la práctica de la conservación de campo y atender la interfase política-sociedad. En el presente ensayo presentamos argumentos enfocados hacia la importancia que las plantaciones tienen como áreas de experimentación dada la diversidad de ambientes en las que se encuentran, desde el nivel del mar hasta las grandes altitudes, así como de estructura y composición de las mismas.

Tem-se evidenciado que sob o dossel de muitas plantações florestais se incorporam, de maneira natural, espécies nativas. Este processo de incorporação (facilitação), pode ser usado como uma oportunidade para criar modelos sucessionais em projetos de restauração e reintrodução de espécies. A necessidade de incorporar informação ecológica básica é uma questão crítica no processo de restauração de ecossistemas. Pinus é um gênero amplamente usado em plantações a nível mundial. No México, as plantações de pinheiros representam 199.790,4 ha ao ano. Muitas destas foram estabelecidas com objetivos de reabilitação e conservação, e constituem uma oportunidade para a restauração apartir da reintrodução de espécies de plantas e animais nativos. Devido a que os pinheiros são considerados como espécies pioneiras da sucessão, as plantações de pinheiros representam laboratórios naturais que nos permitem invalidar hipóteses científicas para fortalecer programas de restauração ou reintrodução de espécies. Estas plantações também representam uma oportunidade para aplicar o conhecimento científico na prática da conservação de campo e atender a interfase política-sociedade. No presente ensaio apresentamos argumentos focados para a importância que as plantações têm como áreas de experimentação devido à diversidade de ambientes em que se encontram, do nível do mar até as grandes altitudes, assim como de estrutura e composição das mesmas.

Bat- and Bird-Generated Seed Rains at Isolated Trees in Pastures in a Tropical Rainforest.

Bats are abundant and effective seed dispersers inside the forest, but what happens when a forest is fragmented and transformed into pasture? The landscape at Los Tuxtlas, Mexico, originally rainforest, is greatly fragmented and covered with pastures. We analyzed the seed rains produced by frugivorous bats and birds under isolated trees in pastures in the fragmented landscape and the contribution of this process to vegetational recovery. We surveyed bats and obtained fecal samples under isolated trees in pastures. We also collected seed rain below the canopy of 10 isolated Ficus trees, separating nocturnally dispersed seeds from diurnally dispersed seeds. We caught 652 bats of 20 species; 83% of captures were frugivores. The most abundant species were Sturnira lilium (48%), Artibeus jamaicensis (18%), Carollia perspicillata (12%), and Dermanura tolteca (11%). Fecal samples contained seeds of 19 species in several families: Piperaceae (50%), Moraceae (25%), Solanaceae (12%), Cecropiaceae (10%), and others (3%). Sturnira lilium was the most important disperser bat in pastures. Seed rain was dominated by zoochorous species (89%). We found seed diversity between day and night seed captures to be comparable, but we found a significant interaction of disperser type ( bird or bat) with season. Seven plant species accounted for 79% of the seed rain: Piper auritum (23%), Ficus ( hemiepiphytic-strangler tree) spp. (17%), Cecropia obtusifolia (10%), P. amalago (10%), Ficus ( free-standing tree) spp. (8%), P. yzabalanum (6%), and Solanum rudepanum (5%). Bats and birds are important seed dispersers in pastures because they disperse seeds of pioneer and primary species (trees, shrubs, herbs, and epiphytes), connect forest fragments, and maintain plant diversity. Consequently, they might contribute to the recovery of woody vegetation in disturbed areas in tropical humid forests.

RESUMEN: Los murciélagos son abundantes y efectivos dispersores de semillas en la selva húmeda alta. Pero, ¿qué sucede cuando la selva es fragmentada y convertida en pastizales? El paisaje en Los Tuxtlas, México, cuya vegetación original era la de bosque lluvioso, está fuertemente fragmentado y dominado por pastizales. Analizamos la lluvia de semillas producida por murciélagos y aves frugívoras bajo árboles aislados en pastizales del paisaje fragmentado, y la contribución de este proceso a la recuperación de la vegetación. Capturamos murciélagos y obtuvimos muestras fecales bajo árboles aislados en pastizales. Colectamos la lluvia de semillas bajo 10 Ficus aislados, separando las semillas "nocturnas" de las "diurnas." Capturamos 652 murciélagos de 20 especies, el 83% de ellos fueron frugívoros. Las especies dominantes fueron: Sturnira lilium (48%), Artibeus jamaicensis (18%), Carollia perspicillata (12%), y Dermanura tolteca (11%). Las muestras fecales contenían semillas de 19 especies de varias familias: Piperaceae (50%), Moraceae (25%), Solanacea (12%), Cecropiaceae (10%), y otras (3%). Sturnira lilium resultó ser el murciélago dispersor más importante del pastizal. En la lluvia de semillas el 89% de las especies fueron zoócoras. No se encontró diferencia en la diversidad de semillas depositadas en la noche o en el día; sin embargo, hubo una interacción significativa del tipo de dispersor (ave o murciélago) con la época del año. Siete especies dominaron el 79% del total de la lluvia: Piper auritum (23%), Ficus ( hemiepífito-matapalo; 17%), Cecropia obtusifolia (10%), P. amalago (10%), Ficus (terrestre; 8%), P. yzabalanum (6%) y Solanum rudepanum (5%). Los murciélagos y las aves son importantes dispersores en pastizales ya que dispersan semillas de especies pioneras y primarias (árboles, arbustos, hierbas y epífitas); conectan remanentes de selva y mantienen la diversidad vegetal. Consecuentemente pueden promover la recuperación de la vegetación leñosa en áreas perturbadas de regiones tropicales húmedas.