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1.
Inorg Chem ; 2024 Jul 12.
Artículo en Inglés | MEDLINE | ID: mdl-38996195

RESUMEN

The photophysical properties of two isostructural heteroligand lanthanide complexes of general formula Ln(pdtc)3(phen) (pdtc = pyrrolidinedithiocarbamate anion, phen = 1,10-phenanthroline), Ln = Sm3+ (1), Eu3+ (2)) were studied in solid state and dichloromethane (DCM) solution. The two lanthanide complexes were investigated by experimental techniques for structural (single-crystal X-ray diffraction analysis of 1, powder XRD, TG-DTA) and spectroscopic [electron paramagnetic resonance (EPR), infrared (IR), ultraviolet-visible (UV-vis), photoluminescence (PL)] characterization. DFT/TDDFT/ωB97xD and multireference SA-CASSCF/NEVPT2 calculations with perturbative spin-orbit coupling corrections were applied to construct the Jablonski energy diagrams and to discuss the excited state energy transfer mechanism with competing excited state processes and possible sensitized mechanism of metal-centered emission. The first excited state (S1) involved in the excited state energy transfer L(antenna)-to-Ln was predicted to have interligand (pdtc-to-phen) charge transfer character in contrast to the previously predicted ligand-to-metal charge transfer character. The theoretical consideration showed similar relaxation paths and luminescence quenching channels and appropriate Donor*(phen)-Acceptor*(Ln3+) energy gap for 1 and 2. The experimental measurements in the solid state, however, showed efficient luminescence and good ability to convert UV to visible light only for the Sm(pdtc)3(phen) complex. The minor emission of 2 was explained by partial reduction of Eu3+, confirmed by EPR and calculated electron density distribution data.

2.
Molecules ; 28(11)2023 Jun 05.
Artículo en Inglés | MEDLINE | ID: mdl-37299035

RESUMEN

Tackling antimicrobial resistance is of increasing concern in a post-pandemic world where overuse of antibiotics has increased the threat of another pandemic caused by antimicrobial-resistant pathogens. Derivatives of coumarins, a naturally occurring bioactive compound, and its metal complexes have proven therapeutic potential as antimicrobial agents and in this study a series of copper(II) and zinc(II) complexes of coumarin oxyacetate ligands were synthesised and characterised by spectroscopic techniques (IR, 1H, 13C NMR, UV-Vis) and by X-ray crystallography for two of the zinc complexes. The experimental spectroscopic data were then interpreted on the basis of molecular structure modelling and subsequent spectra simulation using the density functional theory method to identify the coordination mode in solution for the metal ions in the complexes. Interestingly, the solid-state coordination environment of the zinc complexes is in good agreement with the simulated solution state, which has not been the case in our previous studies of these ligands when coordinated to silver(I). Previous studies had indicated excellent antimicrobial activity for Ag(I) analogues of these ligands and related copper and zinc complexes of coumarin-derived ligands, but in this study none of the complexes displayed antimicrobial activity against the clinically relevant methicillin-resistant Staphylococcus aureus (MRSA), Pseudomonas aeruginosa and Candida albicans.


Asunto(s)
Antiinfecciosos , Complejos de Coordinación , Staphylococcus aureus Resistente a Meticilina , Cobre/química , Zinc/química , Ligandos , Antiinfecciosos/farmacología , Antiinfecciosos/química , Cumarinas/farmacología , Cumarinas/química , Complejos de Coordinación/farmacología , Complejos de Coordinación/química , Espectroscopía de Resonancia Magnética , Pruebas de Sensibilidad Microbiana
3.
Materials (Basel) ; 17(1)2023 Dec 22.
Artículo en Inglés | MEDLINE | ID: mdl-38203910

RESUMEN

The tetracarbonyl complexes of transition metal chalcogenides M2X2(CO)4, where M = Fe, Co, Ni, Cu and X = S, Se, are examined by density functional theory (DFT). The M2X2 core is cyclic with either planar or non-planar geometry. As a sulfide, it is present in natural enzymes and has a selective redox capacity. The reduced forms of the selenide and sulfide complexes are relevant to the hydrogen evolution reaction (HER) and they provide different positions of hydride ligand binding: (i) at a chalcogenide site, (ii) at a particular cation site and (iii) in a midway position forming equal bonds to both cation sites. The full pathway of water decomposition to molecular hydrogen and oxygen is traced by transition state theory. The iron and cobalt complexes, cobalt selenide, in particular, provide lower energy barriers in HER as compared to the nickel and copper complexes. In the oxygen evolution reaction (OER), cobalt and iron selenide tetracarbonyls provide a low energy barrier via OOH* intermediate. All of the intermediate species possess favorable excitation transitions in the visible light spectrum, as evidenced by TD-DFT calculations and they allow photoactivation. In conclusion, cobalt and iron selenide tetracarbonyl complexes emerge as promising photocatalysts in water splitting.

4.
Sci Data ; 9(1): 199, 2022 05 10.
Artículo en Inglés | MEDLINE | ID: mdl-35538078

RESUMEN

Spatially explicit information on forest management at a global scale is critical for understanding the status of forests, for planning sustainable forest management and restoration, and conservation activities. Here, we produce the first reference data set and a prototype of a globally consistent forest management map with high spatial detail on the most prevalent forest management classes such as intact forests, managed forests with natural regeneration, planted forests, plantation forest (rotation up to 15 years), oil palm plantations, and agroforestry. We developed the reference dataset of 226 K unique locations through a series of expert and crowdsourcing campaigns using Geo-Wiki ( https://www.geo-wiki.org/ ). We then combined the reference samples with time series from PROBA-V satellite imagery to create a global wall-to-wall map of forest management at a 100 m resolution for the year 2015, with forest management class accuracies ranging from 58% to 80%. The reference data set and the map present the status of forest ecosystems and can be used for investigating the value of forests for species, ecosystems and their services.


Asunto(s)
Conservación de los Recursos Naturales , Bosques , Ecosistema
5.
Sci Data ; 9(1): 146, 2022 04 01.
Artículo en Inglés | MEDLINE | ID: mdl-35365661

RESUMEN

During December 2020, a crowdsourcing campaign to understand what has been driving tropical forest loss during the past decade was undertaken. For 2 weeks, 58 participants from several countries reviewed almost 115 K unique locations in the tropics, identifying drivers of forest loss (derived from the Global Forest Watch map) between 2008 and 2019. Previous studies have produced global maps of drivers of forest loss, but the current campaign increased the resolution and the sample size across the tropics to provide a more accurate mapping of crucial factors leading to forest loss. The data were collected using the Geo-Wiki platform ( www.geo-wiki.org ) where the participants were asked to select the predominant and secondary forest loss drivers amongst a list of potential factors indicating evidence of visible human impact such as roads, trails, or buildings. The data described here are openly available and can be employed to produce updated maps of tropical drivers of forest loss, which in turn can be used to support policy makers in their decision-making and inform the public.

6.
Sci Data ; 9(1): 13, 2022 01 20.
Artículo en Inglés | MEDLINE | ID: mdl-35058477

RESUMEN

Several global high-resolution built-up surface products have emerged over the last five years, taking full advantage of open sources of satellite data such as Landsat and Sentinel. However, these data sets require validation that is independent of the producers of these products. To fill this gap, we designed a validation sample set of 50 K locations using a stratified sampling approach independent of any existing global built-up surface products. We launched a crowdsourcing campaign using Geo-Wiki ( https://www.geo-wiki.org/ ) to visually interpret this sample set for built-up surfaces using very high-resolution satellite images as a source of reference data for labelling the samples, with a minimum of five validations per sample location. Data were collected for 10 m sub-pixels in an 80 × 80 m grid to allow for geo-registration errors as well as the application of different validation modes including exact pixel matching to majority or percentage agreement. The data set presented in this paper is suitable for the validation and inter-comparison of multiple products of built-up areas.

7.
Spectrochim Acta A Mol Biomol Spectrosc ; 240: 118591, 2020 Oct 15.
Artículo en Inglés | MEDLINE | ID: mdl-32585405

RESUMEN

Excited state energy level diagrams of coumarin-3-carboxylic acid (HCCA) chromophore, Eu(CCA)Cl2(H2O)2 (1), Eu(CCA)2Cl(H2O)2 (2), Eu(CCA)3(H2O)3 (3), Tb(CCA)2Cl(H2O) (4) and Tb(CCA)2(NO3)(H2O) (5) in gas phase and polar solution have been calculated by means of DFT/TDDFT/ωB97XD methods. Based on these results, the ability of CCA to sensitize Eu(III) and Tb(III) luminescence has been examined. The competitive excited state processes in the complexes - fluorescence, intersystem crossing (ISC) and phosphorescence, were analyzed depending on the environment, number of the ligands, Ln(III) ion type (Eu and Tb) and counteranion (Cl- and NO3-). It has been found that the environment altered the S1 state energy, oscillator strength, fluorescence lifetime as well as the S1 character - polar solution stabilized the S1(ππ*) state, whereas non-polar solution (gas phase, solid state) stabilized the S1(nπ*) state. The S1(nπ*) state was decisive for the efficient energy transfer as it suppressed the S1 emission of CCA and favored ISC or direct transfer to the emitting levels of Eu(III). The HCCA triplet (T1) state minimum energy (~2.7, ~2.6ZPE eV) and (ππ*) character were retained in Eu/Tb-CCA complexes regardless of the environment. The energy gap between the higher energy T1 donor state and the acceptor levels 5D1 of Eu(III) (~0.5 eV) and 5D4 of Tb(III) (~0.1 eV) provided optimal resonance conditions for effective energy transfer for Eu(III), but less probability for Tb(III). The nonradiative energy (CCA â†’ Eu(III)) transfer rates and quantum luminescence yield for 2 and 3 were calculated by a strategy combining DFT geometries, INDO/S excitation energies and calculated Judd-Ofelt parameters. The excitation channel T1 â†’ 5D0 through an exchange mechanism was predicted as the most probable one to populate the main emissive Eu-centered state in complexes 2 and 3. The more efficient luminescence of 3 than that of 2 was discussed and explained.

8.
J Mol Model ; 25(4): 90, 2019 Mar 08.
Artículo en Inglés | MEDLINE | ID: mdl-30847580

RESUMEN

The structures of non-ionic [Ag(Tu)(CN)] (1) and ionic [Ag(Dmtu)2]+[Ag(CN)2]- (2) and [Ag(Imt)2]+[Ag(CN)2]- (3) silver(I) complexes, where Tu = thiourea, Dmtu = N,N'-dimethylthiourea and Imt = imidazoline-2-thione), were modeled by periodic DFT/PAW-PBE calculations; results were in good agreement with experiments. The bonding ability of the thiourea ligands (Tu, Dmtu and Imt) and the rival Ag-C, Ag-S, Ag-N and Ag-Ag bonds were estimated by natural population analysis and natural bonding orbital calculations. The metal-ligand bond strengths were found to decrease in the following order Ag-CCN > Ag-Sthiourea > Ag-NCN, and the main bonding contribution was covalent, donor-acceptor and electrostatic, respectively. The non-ionic [Ag(Tu)(CN)] complex formation [distinguished from the ionic Ag(I) complexes] was explained with the largest bonding capacity of the sulfur donor atom of Tu ligand and the strongest covalent and donor-acceptor Ag-S(Tu) interaction. The infrared (IR) spectra of the experimentally observed structures were reliably interpreted and the IR vibrations, which were sensitive to the ligand coordination to Ag(I) ion and to the weak intra- and intermolecular interactions, were selected with the help of DFT frequency calculations in the solid state. Graphical abstract Non-ionic and ionic complex formation and the different coordination polyhedra around Ag(I) in three AgCN complexes of thioureas were evaluated by natural population analysis, natural bonding orbital, charge density and electron localization function calculations. The predicted largest capacity of sulfur (Tu) for donor-acceptor interaction, the largest bridging sulfur ability for three Ag ions and the strongest covalent and donor-acceptor Ag-S(Tu)3 interactions in 1 as compared to 2 and 3 explain the formation of a non-ionic complex, i.e., the Ag(CN)2- anion is missing in 1.

9.
Ann Oncol ; 29(8): 1836-1842, 2018 08 01.
Artículo en Inglés | MEDLINE | ID: mdl-29846502

RESUMEN

Background: Deep learning convolutional neural networks (CNN) may facilitate melanoma detection, but data comparing a CNN's diagnostic performance to larger groups of dermatologists are lacking. Methods: Google's Inception v4 CNN architecture was trained and validated using dermoscopic images and corresponding diagnoses. In a comparative cross-sectional reader study a 100-image test-set was used (level-I: dermoscopy only; level-II: dermoscopy plus clinical information and images). Main outcome measures were sensitivity, specificity and area under the curve (AUC) of receiver operating characteristics (ROC) for diagnostic classification (dichotomous) of lesions by the CNN versus an international group of 58 dermatologists during level-I or -II of the reader study. Secondary end points included the dermatologists' diagnostic performance in their management decisions and differences in the diagnostic performance of dermatologists during level-I and -II of the reader study. Additionally, the CNN's performance was compared with the top-five algorithms of the 2016 International Symposium on Biomedical Imaging (ISBI) challenge. Results: In level-I dermatologists achieved a mean (±standard deviation) sensitivity and specificity for lesion classification of 86.6% (±9.3%) and 71.3% (±11.2%), respectively. More clinical information (level-II) improved the sensitivity to 88.9% (±9.6%, P = 0.19) and specificity to 75.7% (±11.7%, P < 0.05). The CNN ROC curve revealed a higher specificity of 82.5% when compared with dermatologists in level-I (71.3%, P < 0.01) and level-II (75.7%, P < 0.01) at their sensitivities of 86.6% and 88.9%, respectively. The CNN ROC AUC was greater than the mean ROC area of dermatologists (0.86 versus 0.79, P < 0.01). The CNN scored results close to the top three algorithms of the ISBI 2016 challenge. Conclusions: For the first time we compared a CNN's diagnostic performance with a large international group of 58 dermatologists, including 30 experts. Most dermatologists were outperformed by the CNN. Irrespective of any physicians' experience, they may benefit from assistance by a CNN's image classification. Clinical trial number: This study was registered at the German Clinical Trial Register (DRKS-Study-ID: DRKS00013570; https://www.drks.de/drks_web/).


Asunto(s)
Aprendizaje Profundo , Dermatólogos/estadística & datos numéricos , Procesamiento de Imagen Asistido por Computador/métodos , Melanoma/diagnóstico por imagen , Neoplasias Cutáneas/diagnóstico por imagen , Competencia Clínica , Estudios Transversales , Dermoscopía , Humanos , Procesamiento de Imagen Asistido por Computador/estadística & datos numéricos , Cooperación Internacional , Curva ROC , Estudios Retrospectivos , Piel/diagnóstico por imagen
10.
Photochem Photobiol ; 93(6): 1356-1367, 2017 11.
Artículo en Inglés | MEDLINE | ID: mdl-28436037

RESUMEN

Semiclassical ab initio simulations of the absorption spectra of neutral and anionic p-hydroxybenzylidene-2,3-dimethylimidazolinone (p-HBDI), a model chromophore of green fluorescent protein (GFP) and of a positively charged neutral (N+)-HBDI chromophore model, were performed in gas phase with the resolution-of-identity algebraic diagrammatic construction through second-order (RI-ADC(2)) method. The calculated absorption spectra in gas phase are composed of one band centered at 3.51 eV (HBDI), 2.50 eV (HBDI- ) and 3.02 eV ((N+)-HBDI) owing to the absorption of the first 1 ππ* transition. Band maxima are redshifted by ~0.1 eV with respect to the corresponding vertical energies. The COSMO-RI-ADC(2) calculations of the first vertical excitation energy of HBDI, HBDI- and (N+)-HBDI forms in polar solution including microsolvation simulate the observed solvent redshift for neutral HBDI and the solvent blueshift of the HBDI- and (N+)-HBDI forms. The state-specific solvation approach applied to TDDFT calculations reproduced the experimental solvent shifts for the three HBDI forms, demonstrating a more accurate theoretical description as compared to the linear-response TDDFT approach.


Asunto(s)
Proteínas Fluorescentes Verdes/química , Teoría Cuántica , Aniones , Gases , Estructura Molecular , Transición de Fase , Solventes
11.
J Inorg Biochem ; 163: 53-67, 2016 10.
Artículo en Inglés | MEDLINE | ID: mdl-27522552

RESUMEN

Novel silver(I) complexes of coumarin oxyacetate ligands and their phenanthroline adducts have been prepared and characterised by microanalytical data and spectroscopic techniques (IR, 1H, 13C NMR, UV-Vis). The crystal structure of one Ag(I) complex was determined by X-ray diffraction analysis. The experimental spectroscopic data have been interpreted on the basis of molecular structure modeling and subsequent spectra simulation with density functional theory method. The binding modes of the coumarins and phenanthroline ligands (monodentate, bidentate, bridging) to Ag(I) have been theoretically modelled and discussed as to the most probable ligand binding in the series of complexes studied. The antimicrobial and antifungal activities have been determined and the complexes were found to have mostly moderate antibacterial activity but some of the phenanthroline adducts were found to have antifungal activity against the clinically important fungus C. albicans, comparable to that of the commercial agents, Amphotericin B and Ketoconazole. Preliminary investigations into the possible mechanism of action of the silver complexes indicated that they did not interact with DNA via nuclease activity or intercalation but the ability to act as a superoxide dismutase mimetic may be related to their antimicrobial activity.


Asunto(s)
Antibacterianos , Antifúngicos , Candida albicans/crecimiento & desarrollo , Cumarinas , Fenantrolinas , Pseudomonas aeruginosa/crecimiento & desarrollo , Plata , Antibacterianos/síntesis química , Antibacterianos/química , Antibacterianos/farmacología , Antifúngicos/síntesis química , Antifúngicos/química , Antifúngicos/farmacología , Cumarinas/síntesis química , Cumarinas/química , Cumarinas/farmacología , Fenantrolinas/síntesis química , Fenantrolinas/química , Fenantrolinas/farmacología , Plata/química , Plata/farmacología
12.
J Inorg Biochem ; 153: 103-113, 2015 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-26492162

RESUMEN

Silver(I) complexes of coumarin-based ligands and one of their phenanthroline (phen) adducts have been prepared and characterized using microanalytical data, molar conductivity, IR, (1)H and (13)C NMR, UV-Vis, and atomic absorption (AAS) spectroscopies. The binding modes of the coumarin-based ligands and the most probable structure of their Ag(I) complexes were predicted by means of molecular modeling and calculations of their IR, NMR, and absorption spectra using density functional theory (DFT). The cytotoxicity of the compounds studied against human-derived hepatic carcinoma cells (Hep-G2) and a renal cancer cell line (A498) showed that the complexes were more cytotoxic than the clinically used chemotherapeutic, mitoxantrone. The compounds showed little interaction with DNA and also did not show nuclease activity but manifested excellent superoxide dismutase activity which may indicate that their mechanism of action is quite different to many metal-based therapeutics.


Asunto(s)
Antineoplásicos/farmacología , Complejos de Coordinación/farmacología , Cumarinas/farmacología , Fenantrolinas/farmacología , Plata/química , Antineoplásicos/química , Antioxidantes/química , Antioxidantes/farmacología , Complejos de Coordinación/química , Cumarinas/química , ADN/química , Células Hep G2 , Humanos , Ligandos , Mitoxantrona/farmacología , Modelos Moleculares , Fenantrolinas/química , Solubilidad
13.
J Phys Chem A ; 119(24): 6232-43, 2015 Jun 18.
Artículo en Inglés | MEDLINE | ID: mdl-25989536

RESUMEN

The structural processes leading to dual fluorescence of 4-(dimethylamino)benzonitrile in the gas phase and in acetonitrile solvent were investigated using a combination of multireference configuration interaction (MRCI) and the second-order algebraic diagrammatic construction (ADC(2)) methods. Solvent effects were included on the basis of the conductor-like screening model. The MRCI method was used for computing the nonadiabatic interaction between the two lowest excited ππ* states (S2(La, CT) and S1(Lb, LE)) and the corresponding minimum on the crossing seam (MXS) whereas the ADC(2) calculations were dedicated to assessing the role of the πσ* state. The MXS structure was found to have a twisting angle of ∼50°. The branching space does not contain the twisting motion of the dimethylamino group and thus is not directly involved in the deactivation process from S2 to S1. Polar solvent effects are not found to have a significant influence on this situation. Applying Cs symmetry restrictions, the ADC(2) calculations show that CCN bending leads to a strong stabilization and to significant charge transfer (CT). Nevertheless, this structure is not a minimum but converts to the local excitation (LE) structure on releasing the symmetry constraint. These findings suggest that the main role in the dynamics is played by the nonadiabatic interaction of the LE and CT states and that the main source for the dual fluorescence is the twisted internal charge-transfer state in addition to the LE state.

14.
Environ Sci Technol ; 48(20): 11803-10, 2014 Oct 21.
Artículo en Inglés | MEDLINE | ID: mdl-25251872

RESUMEN

Interaction between the goethite surface and 4-chloro-2-methylphenoxyacetic acid (MCPA) herbicide was studied using density functional theory (DFT) calculations combined with molecular dynamics (MD). The important step made here lies in the use of a periodic DFT method enabling the study of a mineral surface of different protonation states, in strong contrast with previous molecular modeling studies limited to single protonation state corresponding to the point of zero charge. Different surface OH groups and MCPA proton states were used to mimic the strong effects of pH on the outer- and inner-sphere surface complexes that are theoretically possible, together with their binding energies, and their bond lengths. Modeling both a solvated and a protonated (110) goethite surface provided a major breakthrough in the acidic adsorption regime. An outer-sphere complex and a monodentate inner-sphere complex with the neutral MCPA molecule were found to be the most energetically stable adsorbate forms. MD modeling predicted that the latter forms via the sharing of the carbonyl oxygen between the MCPA carboxylate group and a singly coordinated surface hydroxyl group, releasing an H2O molecule. All the other complexes, including the bidentate inner-sphere complex, had higher relative energies and were therefore less likely. The two most likely DFT-optimized structures were used to constrain a surface complexation model applying the charge distribution multisite complexation (CD-MUSIC) approach. The adsorption constants for the complexes were successfully fitted to experimental batch equilibrium data.


Asunto(s)
Ácido Acético/aislamiento & purificación , Herbicidas/aislamiento & purificación , Compuestos de Hierro/química , Minerales/química , Adsorción , Fraccionamiento Químico , Ambiente , Concentración de Iones de Hidrógeno , Modelos Teóricos , Simulación de Dinámica Molecular , Propiedades de Superficie
15.
Am J Dermatopathol ; 36(8): 635-42, 2014 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-23739246

RESUMEN

Seborrheic keratosis (SK) represents a frequent epidermal skin tumor. Although lacking a malignant potential, these tumors reveal multiple oncogenic mutations. A previous study identified activating mutations in 89% of SK, particularly in FGFR3 and PIK3CA genes. The aim of this study was to identify further oncogenic mutations in human SK. Therefore, we screened for mutations in EGFR, FGFR2, PIK3R1, HRAS, KRAS, and NRAS genes using both Sanger sequencing of selected exons and a multiplex SNaPshot assay in 58 SK of 14 patients. We identified a somatic EGFR p.L858R mutation in 1 SK. Furthermore, the HRAS mutations p.G13R (2/58 SK) and p.Q61L (2/58 SK) were found. These mutations have not been described in human SK yet. In addition, 1 SK revealed the KRAS p.G12V mutation, which has already been reported in SK. No mutations were detected in FGFR2, PIK3R1, and NRAS genes. The results of this study suggest that activating mutations of EGFR, HRAS, and KRAS contribute to the pathogenesis of human SK, although at a lower frequency than FGFR3 and PIK3CA mutations. FGFR2, PIK3R1, and NRAS mutations obviously do not have a significant role in the development of SK.


Asunto(s)
Biomarcadores de Tumor/genética , Receptores ErbB/genética , Queratosis Seborreica/genética , Mutación , Oncogenes , Proteínas Proto-Oncogénicas p21(ras)/genética , Proteínas Proto-Oncogénicas/genética , Proteínas ras/genética , Adulto , Anciano , Anciano de 80 o más Años , Fosfatidilinositol 3-Quinasa Clase Ia , Análisis Mutacional de ADN , Femenino , Predisposición Genética a la Enfermedad , Humanos , Masculino , Persona de Mediana Edad , Fenotipo , Fosfatidilinositol 3-Quinasas/genética , Receptor Tipo 2 de Factor de Crecimiento de Fibroblastos/genética
16.
J Mol Model ; 18(6): 2409-22, 2012 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-21989960

RESUMEN

Theoretical and spectroscopic studies of a series of monomeric and dimeric complexes formed through the modification of a zirconium butoxide precursor with acetylacetone and subsequent hydrolysis and/or condensation have been performed by applying DFT/B3LYP/6-31++G(d) and highly accurate RI-ADC(2) methods as well as IR and UV-Vis transmittance and diffuse reflectance spectroscopies. Based on DFT model calculations and simulated and experimental UV-Vis and IR spectra of all the studied structures, the most probable building units of the Zr(IV)-AcAc gel were predicted: the dimeric double hydroxo-bridged complex Zr(2)(AcAc)(2)(OH)(4)(OH)(2br) 9 and the monooxo-bridged complex Zr(2)(AcAc)(2)(OH)(4)O(br)·2H(2)O 12. In both structures, the two AcAc ligands are coordinated to one Zr atom. It was shown that building units 9 and 12 determine the photophysical and vibrational properties of the gel material. The observed UV-Vis and IR spectra of Zr(IV)-AcAc gel were interpreted and a relation between the spectroscopic and structural data was derived. The observed UV-Vis bands at 315 nm and 298/288 nm were assigned to partial ligand-metal transitions and to intra-/inter-AcAc ligand transitions, respectively.


Asunto(s)
Simulación por Computador , Complejos de Coordinación/química , Modelos Moleculares , Pentanonas/química , Circonio/química , Geles , Enlace de Hidrógeno , Hidrólisis , Conformación Molecular , Teoría Cuántica , Espectrofotometría Infrarroja , Espectrofotometría Ultravioleta
17.
Inorg Chem ; 49(4): 1634-46, 2010 Feb 15.
Artículo en Inglés | MEDLINE | ID: mdl-20055424

RESUMEN

Solvatochromic and ionochromic effects of the iron(II)bis(1,10-phenanthroline)dicyano (Fe(phen)(2)(CN)(2)) complex were investigated by means of combined DFT/TDDFT calculations using the PBE and B3LYP functionals. Extended solvation models of Fe(phen)(2)(CN)(2) in acetonitrile and aqueous solution, as well as including interaction with Mg(2+), were constructed. The calculated vertical excitation energies reproduce well the observed solvatochromism in acetonitrile and aqueous solutions, the ionochromism in acetonitrile in the presence of Mg(2+), and the absence of ionochromic effect in aqueous solution. The vertical excitation energies and the nature of the transitions were reliably predicted after inclusion of geometry relaxation upon aqueous micro- and global solvation and solvent polarization effect in the TDDFT calculations. The two intense UV-vis absorption bands occurring for all systems studied are interpreted as transitions from a hybrid Fe(II)(d)/cyano N(p) orbital to a phenanthroline pi* orbital rather than a pure metal-to-ligand-charge transfer (MLCT). The solvatochromic and ionochromic blue band shifts of Fe(phen)(2)(CN)(2) were explained with preferential stabilization of the highest occupied Fe(II)(d)/cyano N(p) orbitals as a result of specific interactions with water solvent molecules or Mg(2+) ions in solution. Such interactions occur through the CN(-) groups in the complex, and they have a decisive role for the observed blue shifts of UV-vis absorption bands.

18.
J Chem Phys ; 131(5): 054101, 2009 Aug 07.
Artículo en Inglés | MEDLINE | ID: mdl-19673545

RESUMEN

The adsorption of NO on Co(II)-exchanged chabazite (CHA), mordenite (MOR), and ferrierite (FER) has been investigated by periodic density functional theory calculations. The most stable configurations of Co(II) in alpha and beta sites of the zeolites with two framework Al/Si substitutions at short distances and Al-(Si)(n>1)-Al ordering are used for calculating the adsorption energy of NO molecules on Co(II) cations and at Al framework sites. The less stable configurations of alpha-Co(II)-MOR/FER show larger adsorption energies for one and two NO molecules. The bonding of one, two (and three) NO molecules to alpha/beta-Co(II) sites in CHA/MOR/FER induces a shortening of the N-O bond lengths because electron density is withdrawn from the antibonding orbital of the adsorbed NO molecule. The calculated nu(NO) stretching frequencies of mono- and dinitrosyl complexes at alpha/beta-Co(II)-MOR/FER are in good agreement with the experimental data. NO molecules adsorbed on alpha-Co(II)-MOR and on alpha-Co(II)-FER show similar NO stretching frequencies as nitrosyl complexes in Co(II)-MOR/-FER/-ZSM-5. Mononitrosyl complexes of alpha/beta-Co(II)-MOR/FER display nu(NO) frequencies blueshifted relative to the free NO, while in dinitrosyl complexes both the symmetric and asymmetric components are redshifted compared to the mononitrosyl frequency. The analysis of the vibrational spectra suggests that mononitrosyls are formed by adsorption at cation in both alpha and beta sites in MOR, FER, and ZSM-5, while dinitrosyl complexes exist only at alpha-type Lewis sites. This is important for the understanding of the reduction mechanism of NO to N(2). A larger adsorption capacity of alpha-Co(II)-FER compared to alpha-Co(II)-MOR is predicted.

19.
J Mol Model ; 14(5): 353-66, 2008 May.
Artículo en Inglés | MEDLINE | ID: mdl-18286310

RESUMEN

Molecular modeling of the La(III) complex of 3,3'-(benzylidene)bis(4-hydroxycoumarin) (PhDC) was performed using density functional theory (DFT) methods at B3LYP/6-31G(d) and BP86/TZP levels. Both Stuttgart-Dresden effective core potential and ZORA approximation were applied to the La(III) center. The electron density distribution and the nucleophilic centers of the deprotonated ligand PhDC(2-) in a solvent environment were estimated on the basis of Hirshfeld atomic charges, electrostatic potential values at the nuclei, and Nalewajski-Mrozek bond orders. In accordance with the empirical formula La(PhDC)(OH)(H(2)O), a chain structure of the complex was simulated by means of two types of molecular fragment: (1) two La(III) cations bound to one PhDC(2-) ligand, and (2) two PhDC(2-) ligands bound to one La(III) cation. Different orientations of PhDC(2-), OH(-) and H(2)O ligands in the La(III) complexes were investigated using 20 possible [La(PhDC(2-))(2)(OH)(H(2)O)](2-) fragments. Energy calculations predicted that the prism-like structure based on "tail-head" cis-LML2 type binding and stabilized via HO...HOH intramolecular hydrogen bonds is the most probable structure for the La(III) complex. The calculated vibrational spectrum of the lowest energy La(III) model fragment is in very good agreement with the experimental IR spectrum of the complex, supporting the suggested ligand binding mode to La(III) in a chain structure, namely, every PhDC(2-) interacts with two La(III) cations through both carbonylic and both hydroxylic oxygens, and every La(III) cation binds four oxygen atoms of two different PhDC(2-).


Asunto(s)
Cumarinas/química , Lantano/química , Compuestos Organometálicos/química , Modelos Moleculares , Conformación Molecular , Teoría Cuántica , Espectroscopía Infrarroja por Transformada de Fourier
20.
Inorg Chem ; 46(25): 10926-36, 2007 Dec 10.
Artículo en Inglés | MEDLINE | ID: mdl-17990875

RESUMEN

The interaction of lanthanide(III) cations (Ln(III) = Sm(III), Eu(III), and Tb(III)) with the deprotonated form of the coumarin-3-carboxylic acid (cca-) has been investigated by density functional theory (DFT/B3LYP) and confirmed by reference MP2 and CCSD(T) computations. Solvent effects on the geometries and stabilities of the Ln(III) complexes were computed using a combination of water clusters and a continuum solvation model. The following two series of systems were considered: (i) Ln(cca)2+, Ln(cca)2+, Ln(cca)3 and (ii) Ln(cca)(H2O)2Cl2, Ln(cca)2(H2O)2Cl, Ln(cca)3. The strength and character of the Ln(III)-cca- bidentate bonding were characterized by calculated Ln-O bond lengths, binding energies, ligand deformation energies, energy partitioning analysis, sigma-donation contributions, and natural population analyses. The energy decomposition calculations predicted predominant electrostatic interaction terms to the Ln-cca bonding (ionic character) and showed variations of the orbital interaction term (covalent contributions) for the Ln-cca complexes studied. Electron distribution analysis suggested that the covalent contribution comes mainly from the interaction with the carboxylate moiety of cca-.


Asunto(s)
Cumarinas/química , Europio/química , Gases/química , Samario/química , Terbio/química , Ligandos , Modelos Moleculares , Conformación Molecular , Soluciones
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