Treatment of cow manure from exercise pens: A laboratory-scale study of the effect of air injection on conventional and alternative biofilters.

Woodchips in stand-off pads for wintering cows have been applied in countries like Ireland and New Zealand. Their primary role is to protect soils by effectively filtering nutrients during wet conditions, while ensuring a healthy and comfortable environment for the cows. The stand-off pad concept has the potential to be adopted in Canada to provide year-long outdoor access to tie-stall dairy cows. The objective of this study was to evaluate the effect of alternative filtering materials and bed aeration under controlled laboratory conditions. Twelve biofilter columns (0.3 m in diameter and 1-m high) were installed in 12 environmentally-controlled chambers (1.2-m wide by 2.4-m long), and divided into four treatments: a bed of conventional woodchips or an alternative mix of organic materials (sphagnum peat moss, woodchips and biochar) with and without aeration (flux rate set at 0.6 m3/min/m2). Approximately 0.6 L of semi-synthetic dairy manure and 1 L of tap water were poured on the biofilters during two experimental periods of 4 weeks, simulating the effect of either winter or summer conditions (room temperature below or over 10 °C) on the retention of nutrients and fecal bacteria. Results showed that the alternative biofilters under both summer and winter conditions were more efficient in removing COD, SS, TN, and NO3-N than conventional biofilters (maximum efficiencies of 97.6%, 99.7%, 96.4%, and 98.4%, respectively). Similarly for E. coli, they achieved a minimum concentration of 1.8 Log10 CFU/100 ml. Conventional biofilters were more efficient for PO4-P removal with a maximum efficiency of 88.2%. Aeration did not have any significant effect under the tested temperature conditions. Additional factors such as media adaptation time as well as aeration flow during this period should be considered.

Contribution of Manure-Spreading Operations to Bioaerosols and Antibiotic Resistance Genes' Emission.

Manure spreading from farm animals can release antibiotic-resistant bacteria (ARB) carrying antimicrobial resistance genes (ARGs) into the air, posing a potential threat to human and animal health due to the intensive use of antibiotics in the livestock industry. This study analyzed the effect of different manure types and spreading methods on airborne bacterial emissions and antibiotic resistance genes in a controlled setting. Cow, poultry manure, and pig slurry were spread in a confined environment using two types of spreaders (splash plate and dribble bar), and the resulting emissions were collected before, during, and after spreading using high-volume air samplers coupled to a particle counter. Total bacteria, fecal indicators, and a total of 38 different subtypes of ARGs were further quantified by qPCR. Spreading poultry manure resulted in the highest emission rates of total bacteria (1011 16S gene copies/kg manure spread), Archaea (106 16S gene copies/kg manure), Enterococcus (105 16S gene copies/kg manure), and E. coli (104 16S gene copies/kg manure), followed by cow manure and pig slurry with splash plates and the dribble bar. Manure spreading was associated with the highest rates of airborne aminoglycoside genes for cow and poultry (106 gene copies/kg manure), followed by pig slurry (104 gene copies/kg manure). This study shows that the type of manure and spreading equipment can affect the emission rates of airborne bacteria, and ARGs.

Antimicrobial Resistance in the Environment: Towards Elucidating the Roles of Bioaerosols in Transmission and Detection of Antibacterial Resistance Genes.

Antimicrobial resistance (AMR) is continuing to grow across the world. Though often thought of as a mostly public health issue, AMR is also a major agricultural and environmental problem. As such, many researchers refer to it as the preeminent One Health issue. Aerial transport of antimicrobial-resistant bacteria via bioaerosols is still poorly understood. Recent work has highlighted the presence of antibiotic resistance genes in bioaerosols. Emissions of AMR bacteria and genes have been detected from various sources, including wastewater treatment plants, hospitals, and agricultural practices; however, their impacts on the broader environment are poorly understood. Contextualizing the roles of bioaerosols in the dissemination of AMR necessitates a multidisciplinary approach. Environmental factors, industrial and medical practices, as well as ecological principles influence the aerial dissemination of resistant bacteria. This article introduces an ongoing project assessing the presence and fate of AMR in bioaerosols across Canada. Its various sub-studies include the assessment of the emissions of antibiotic resistance genes from many agricultural practices, their long-distance transport, new integrative methods of assessment, and the creation of dissemination models over short and long distances. Results from sub-studies are beginning to be published. Consequently, this paper explains the background behind the development of the various sub-studies and highlight their shared aspects.

Apple Pomace and Performance, Intestinal Morphology and Microbiota of Weaned Piglets-A Weaning Strategy for Gut Health?

Apple pomace (AP) is known to be rich in biomolecules beneficial for health and it may advantageously be used to overcome the critical step of piglets' weaning. The study aimed to determine the effect of two levels of incorporation of AP on the performance, intestinal morphology, and microbiota of weaned piglets and investigate this feed ingredient as a weaning strategy. An experiment was performed with 42 piglets from weaning (28 days old) over a five-week period, including three iso-energetic and iso-nitrogenous diets (0%, 2%, and 4% dried AP diets) with seven pen-repetitions per diet (two pigs per pen). AP diets were beneficial for the average daily gain calculated on week 3 (p = 0.038) and some parameters of the intestinal architecture on the 35 post-weaning day. The 4% AP diet was beneficial for the feed conversion ratio (p = 0.002) and the energetic feed efficiency (p = 0.004) on the 35 post-weaning day. AP tended to influence the consistency of feces (softer to liquid, p = 0.096) and increased the counts of excreted pathogens (p = 0.072). Four percent AP influenced the richness of the microbiota and the bacteria profile as observed for the phylum Bacteroidetes or the class Clostridia. The 4% AP diet appeared as an interesting weaning strategy that should be evaluated in a large cohort.

Production of composted recycled manure solids from a Canadian dairy farm: Impact on microbial air quality in experimental conditions.

Recycled manure solids (RMS) produced in dairy farms from fresh manure need to be sanitized before using them as bedding material. However, the impact on air quality of composting RMS remains unknown. Four RMS composting methods were tested during a 10-day aging of piles in experimental chambers: static windrow (SW), turned windrow (TW), SW following drum composting for 24 h (DC24) or SW following drum composting for 72 h (DC72). Air samples were collected using a SASS®3100 Dry Air Sampler on days 0 (pilling of the RMS), 5, and 10. Bacteria (16S rRNA genes), Penicillium/Aspergillus, A fumigatus, and 11 human pathogenic bacteria (e.g. Klebsiella pneumonia) were quantified by qPCR while endotoxins and dust particles were, respectively, measured by LAL assays and with a DustTrakTM DRX Aerosol Monitor. On day 0, RMS produced by SW and TW yielded the lowest concentrations of airborne bacteria, while DC24 resulted in the lowest levels of Penicillium/Aspergillus and dust particles. SW method led on day 5 to the lowest concentration of bacteria and Penicillium/Aspergillus, and DC24 and DC72 to the lowest concentration of airborne dust. On day 10, SW and TW piles were associated with the lowest levels of Penicillium/Aspergillus and dust particles. A significant difference was observed between concentration of airborne bacteria, Penicillium/Aspergillus and endotoxins before and during the turnover of TW piles. None of the studied human pathogens was detected in the air samples. Results of the present study suggest that SW and TW are the most promising methods for the production of composted RMS with respect to microbial air quality. However, the experimental chambers do not accurately represent commercial dairy barns and further research on these composting methods is necessary. Finally, the study highlights that bedding material and its management may be determinant factors for air quality in dairy barns.Implications: The research evaluated the impact on microbial air quality of composting recycled manure solids (RMS) produced from fresh cow manure. RMS need to be composted or sanitized before using them as bedding material for animals. The impact on animal health of RMS still needs to be confirmed, while the effect on air quality and the health of dairy farmers is unknown. In the present study, microbial air quality associated with four RMS composting methods was investigated. Data revealed that two methods resulted in lower aerosolization of dust particles, endotoxins, molds, and bacteria.

Assessing Environmental Control Strategies in Cage-Free Egg Production Systems: Effect on Spatial Occupancy and Natural Behaviors.

Animal welfare concerns have been a challenging issue for producers and international marketing. In laying hen production, cage-free systems (CFS) have been identified as an alternative to ensure the laying hens' well-being. Nevertheless, in CFS, important environmental issues have been reported, decreasing indoor air quality. Environmental control strategies (ECS) have been designed to enhance indoor air quality in CFSs. However, little information exists about the effect of these ECSs on natural animal behaviors. Four strategies and one control were tested in an experimental CFS, previously designed to track behavioral variables using video recordings over seven time-lapses of 1 hour per day. Spatial occupancy (SO) and laying hen behaviors (LHB) were registered. One statistical analysis was applied to evaluate the effect of ECS on SO and LHB using a multinomial response model. Results show lower chances to use litter area within the reduction of litter allowance treatment (T17) (p < 0.05). Neither the four ECSs nor the control implemented in this experiment affected the natural behaviors of the hens. However, stress patterns and high activity were reported in the T17 treatment. This study shows that it is possible to use these ECSs without disrupting laying hens' natural behaviors.

Low incidence of airborne SARS-CoV-2 in acute care hospital rooms with optimized ventilation.

The worldwide repercussions of COVID-19 sparked important research efforts, yet the detailed contribution of aerosols in the transmission of SARS-CoV-2 has not been elucidated. In an attempt to quantify viral aerosols in the environment of infected patients, we collected 100 air samples in acute care hospital rooms hosting 22 patients over the course of nearly two months using three different air sampling protocols. Quantification by RT-qPCR (ORF1b) led to 11 positive samples from 6 patient rooms (Ct < 40). Viral cultures were negative. No correlation was observed between particular symptoms, length of hospital stay, clinical parameters, and time since symptom onset and the detection of airborne viral RNA. Low detection rates in the hospital rooms may be attributable to the appropriate application of mitigation methods according to the risk control hierarchy, such as increased ventilation to 4.85 air changes per hour to create negative pressure rooms. Our work estimates the mean emission rate of patients and potential airborne concentration in the absence of ventilation. Additional research is needed understand aerosolization events occur, contributing factors, and how best to prevent them.

Effect of Non-Conventional Drying Methods on In Vitro Starch Digestibility Assessment of Cooked Potato Genotypes.

Potatoes (Solanum tuberosum L.) are a good dietary source of carbohydrates in the form of digestible starch (DS) and resistant starch (RS). As increased RS content consumption can be associated with decreased chronic disease risk, breeding efforts have focused on identifying potato varieties with higher RS content, which requires high-throughput analysis of starch profiles. For this purpose, freeze drying of potatoes has been used but this approach leads to inaccurate RS values. The present study objective was to assess the starch content (RS, DS and total starch (TS)) of three cooked potato genotypes that were dried using freeze drying and innovative drying techniques (microwave vacuum drying, instant controlled pressure drop drying and conductive hydro-drying) relative to freshly cooked potato samples. Depending on the genotype, all drying methods showed one or more starch measures that were significantly different from freshly cooked values. The combination of ultrasound and infrared assisted conductive hydro-drying was the only method identified to be associated with accurate assessment of DS and TS content relative to fresh samples. The drying treatments were all generally associated with highly variable RS content relative to fresh controls. We conclude that freshly cooked samples must be used for selecting varieties with a high proportion of RS starch as drying of cooked potatoes leads to unreliable RS measurements.

Parameters determining the performance of passive flux samplers proposed as a tool to estimate N2O emissions: evaluation at farm level and perspectives.

The passive flux sampling is an economic and easy way to estimate gas emissions from agriculture sources. In the last decade, specific passive flux samplers (PFSs) have been developed to estimate nitrous oxide (N2O) emissions from agriculture sources. Packed with silica gel and zeolite 5A, the PFSs were placed facing the emission source direction close to the ventilation shafts. For validation, air samples were taken at different sampling time during 3 days on two commercial sites. The adsorbed mass of N2O in PFSs was recovered by thermal desorption in the laboratory. Results indicated that the mass of N2O adsorbed in PFSs was from 1.5 to 5.5 µg. A specific adsorption pattern was observed for each sampling. In farm 1, the mass of N2O adsorbed in the PFSs presented a linear behavior as a function of sampling time, and the most determined coefficient values were higher than 0.80. In farm 2, in addition to the sampling time, the N2O concentration and the air flow rate presented an effect on the mass adsorbed in the PFSs. On the other hand, comparison of PFSs versus other techniques indicated that PFSs offer different advantages. However, the selectivity and capacity of the adsorbent bed used need to be improved to enhance the use of PFSs proposed as a tool to estimate N2O emissions. Graphical Abstract PFSs enabled N2O sampling that followed a linear behavior as a function of sampling time. Sampling time, [N2O], and air flow rate determined the mass of N2O collected in PFSs.

Use of antibiotics in broiler production: Global impacts and alternatives.

Antibiotics are used to fight bacterial infections. However, a selective pressure gave rise to bacteria resistant to antibiotics. This leaves scientists worried about the danger to human and animal health. Some strategies can be borrowed to reduce the use of antibiotics in chicken farms. Much research has been carried out to look for natural agents with similar beneficial effects of growth promoters. The aim of these alternatives is to maintain a low mortality rate, a good level of animal yield while preserving environment and consumer health. Among these, the most popular are probiotics, prebiotics, enzymes, organic acids, immunostimulants, bacteriocins, bacteriophages, phytogenic feed additives, phytoncides, nanoparticles and essential oils.

Alternatives to antibiotics in poultry feed: molecular perspectives.

The discovery of the growth promoting property of antibiotics led to their use as antibiotic feed additives (AFAs) in animal feed at sub-therapeutic doses. Although this has been beneficial for animal health and productivity, it has been, essentially, a double-edged sword. The continued and non-judicious use of AFAs has led to the selection and dissemination of antibiotic-resistant strains of poultry pathogens such as Salmonella, Campylobacter and Escherichia coli. The rapid spread of drug-resistant pathogens as well as emergence of antibiotic-related environmental pollutants is of global concern. Hence, the identification and development of new and effective alternatives to antibiotics that do not hinder productivity is imperative. For this, it is essential to understand not only the molecular basis of development of resistance to AFAs but also the mechanisms of action of AFA alternatives and how they differ from AFAs. This review provides a molecular perspective on the alternatives to antibiotics that have been proposed till date and their current trends, as well as novel approaches such as development of improved delivery systems.

Parameters determining the use of zeolite 5A as collector medium in passive flux samplers to estimate N2O emissions from livestock sources.

The present study analyzes the effect of parameters that determine the use of the zeolite 5A as collector medium in passive flux samplers (PFS) developed to estimate N2O emissions from livestock buildings. The study analyzes the mass of N2O collected on the zeolite 5A as a function of gas flow rate (40 and 130 ml/min), inlet mass of N2O to the PFS (from 7 to 84 µg), adsorbent mass (4 and 13.6 g), length of the adsorbent bed (1.9 and 10.9 cm), and inlet N2O concentration (0.6 and 2 ppmv). The mass of N2O collected on the zeolite 5A ranged from 1.24 to 6.19 µg of N2O/g of adsorbent, which was mainly affected by inlet N2O concentration and mass of adsorbent contained in the PFS. The mass of N2O collected presented a significant relationship with the inlet N2O concentration and the adsorbent bed. Tests were performed using PFS in a laboratory farm under semi-real conditions. It was found that at sampling time of 1.5 h, the accuracy and precision of PFS was appropriate. Under evaluated conditions, a maximum variation between PFS and direct detection of around 12% was estimated.

Soil biochar amendment as a climate change mitigation tool: Key parameters and mechanisms involved.

Biochar, a solid porous material obtained from the carbonization of biomass under low or no oxygen conditions, has been proposed as a climate change mitigation tool because it is expected to sequester carbon (C) for centuries and to reduce greenhouse gas (GHG) emissions from soils. This review aimed to identify key biochar properties and production parameters that have an effect on these specific applications of the biochar. Moreover, mechanisms involved in interactions between biochar and soils were highlighted. Following a compilation and comparison of the characteristics of 76 biochars from 40 research studies, biochars with a lower N content, and consequently a higher C/N ratio (>30), were found to be more suitable for mitigation of N2O emissions from soils. Moreover, biochars produced at a higher pyrolysis temperature, and with O/C ratio <0.2, H/Corg ratio <0.4 and volatile matter below 80% may have high C sequestration potential. Based on these observations, biochar production and application to the field can be used as a tool to mitigate climate change. However, it is important to determine the pyrolysis conditions and feedstock needed to produce a biochar with the desired properties for a specific application. More research studies are needed to identify the exact mechanisms involved following biochar amendment to soil.

Manure derived biochar can successfully replace phosphate rock amendment in peatland restoration.

Phosphate rock fertilization is commonly used in peatland restoration to promote the growth of Polytrichum strictum, a nurse plant which aids the establishment of Sphagnum mosses. The present study tested whether 1) phosphorus fertilization facilitates the germination of P. strictum spores and 2) biochar derived from local pig manure can replace imported phosphate rock currently used in peatland restoration. Various doses of biochar were compared to phosphate rock to test its effect directly on P. strictum stem regeneration (in Petri dishes in a growth chamber) and in a simulation of peatland restoration with the moss layer transfer technique (in mesocoms in a greenhouse). Phosphorus fertilization promoted the germination of P. strictum spores as well as vegetative stem development. Biochar can effectively replace phosphate rock in peatland restoration giving a new waste management option for rural regions with phosphorus surpluses. As more available phosphorus was present in biochar, an addition of only 3-9 g m(-2) of pig manure biochar is recommended during the peatland restoration process, which is less than the standard dose of phosphate rock (15 g m(-2)).

Comparison of the gaseous and particulate matter emissions from the combustion of agricultural and forest biomasses.

The aim of this study was to compare gaseous and particulate matter (PM) emissions from the combustion of agricultural (switchgrass, fast-growing willow and the dried solid fraction of pig manure) and forest (wood mixture of Black Spruce and Jack Pine) biomasses in a small-scale unit (17.58kW). Concentrations of CO2, CO, CH4, NO2, NH3, N2O, SO2, HCl, and H2O were measured by Fourier transform infrared spectroscopy and converted into emission rates. Opacity was also evaluated and particulates were sampled. Results showed significantly higher emissions of SO2, NO2 and PM with the combustion of agricultural biomass compared to the forest biomass. However, further studies should be carried out so regulations can be adapted in order to permit the combustion of agricultural biomass in small-scale combustion units.

Removal of carbon, nitrogen and phosphorus from the separated liquid phase of hog manure by the multi-zone BioCAST technology.

The removal of chemical oxygen demand (COD), total nitrogen (TN) and total phosphorus (TP) at concentrations of 960 ± 38 to 2400 ± 96 mg/L, 143 ± 9 to 235 ± 15 mg/L and 25 ± 2 to 57 ± 4 mg/L, respectively, from the separated liquid phase of hog manure by the multi-zone BioCAST technology is discussed. Despite the inhibitory effect of hog waste toward microbial activities, removal efficiencies up to 89.2% for COD, 69.2% for TN and 47.6% for TP were obtained during 185 d of continuous operation. The free ammonia inhibition was postulated to be responsible for the steady reduction of COD and TP removal with the increase of TN/TP ratio from 3.6 to 5.8. On the contrary, the increase of COD/TN ratio from 4.8 to 14.1 improved the removal of all contaminants. Nitrogen removal did not show any dependence on the COD/TP ratio, despite the steady increase of COD and TP removal with this ratio in the range of 19.3-50.6. The removal efficiencies of organic and inorganic contaminants increased progressively owing to the adaptation of microbial biomass, resulting from the presence of suspended biomass in the mixed liquor that circulated continuously between the three zones of aerobic, microaerophilic and anoxic, as well as the attached biomass immobilized inside the aerobic zone.

A critical review of emission standards and regulations regarding biomass combustion in small scale units (<3 MW).

Wood and agricultural crop residues are abundant, renewable and relatively low cost biomasses. Their combustion can replace fossil fuels in several applications. A major concern with biomass combustion is the emission of particulate matter (PM) in the atmosphere. The World Health Organization (WHO) has developed ambient air quality guidelines, notably maximum average annual levels of 20 µg/m(3) for PM10 (particulate matter<10 µm). Combustion standards generally assess total PM at the chimney stack, with variable levels depending on local legislation, industrial activity, population density, etc. (e.g. 100-200mg/m(3) in Massachusetts, 150 mg/m(3) in Québec, and 600 mg/m(3) in New York). Some areas mandate relatively low PM levels from boilers (50mg/m(3) in Europe, 20mg/m(3) in Germany starting in 2015). The availability of conditioned and relatively dry biomass, along with PM removal technologies (e.g. cyclones, scrubbers, precipitators, and baghouse filters), will become important requirements for future biomass combustion.

Greenhouse Gas Emissions from Three Cage Layer Housing Systems.

Agriculture accounts for 10 to 12% of the World's total greenhouse gas (GHG) emissions. Manure management alone is responsible for 13% of GHG emissions from the agricultural sector. During the last decade, Québec's egg production systems have shifted from deep-pit housing systems to manure belt housing systems. The objective of this study was to measure and compare carbon dioxide (CO2), methane (CH4) and nitrous oxide (N2O) emissions from three different cage layer housing systems: a deep liquid manure pit and a manure belt with natural or forced air drying. Deep liquid manure pit housing systems consist of "A" frame layer cages located over a closed pit containing the hens' droppings to which water is added to facilitate removal by pumping. Manure belt techniques imply that manure drops on a belt beneath each row of battery cages where it is either dried naturally or by forced air until it is removed. The experiment was replicated with 360 hens reared into twelve independent bench-scale rooms during eight weeks (19-27 weeks of age). The natural and forced air manure belt systems reduced CO2 (28.2 and 28.7 kg yr(-1) hen(-1), respectively), CH4 (25.3 and 27.7 g yr(-1) hen(-1), respectively) and N2O (2.60 and 2.48 g yr(-1) hen(-1), respectively) emissions by about 21, 16 and 9% in comparison with the deep-pit technique (36.0 kg CO2 yr(-1) hen(-1), 31.6 g CH4 yr(-1) hen(-1) and 2.78 g N2O yr(-1) hen(-1)). The shift to manure belt systems needs to be encouraged since this housing system significantly decreases the production of GHG.

Swine production impact on residential ambient air quality.

Numerous residents in agricultural areas are concerned about the impact that the swine industry may have on the ambient air quality. They assume there is a risk because there is limited information on the airborne contaminant that may originate from these facilities. The objective of the project was to assess the impact of swine production on ambient air quality related to public health in farming communities. Of the six chosen communities, three were considered not to be in a swine production area, whereas the three others were considered to be within a swine production area. Data were collected during three periods in spring and summer 2006. Ammonia and hydrogen sulfide concentrations were monitored on a continuous basis whereas odor concentrations and intensities were monitored twice a week. Odor concentrations were measured by dynamic olfactometry and odor intensities were determined by trained odor assessors. Public health was evaluated by survey questionnaires sent to a sample of residents in each of the six communities. Average NH(3) concentrations ranged from 6.9 to 12.6 ppb for nonexposed communities and from 8.9 to 18.3 ppb for exposed communities. Average H(2)S concentrations ranged from 1.1 to 1.5 ppb for nonexposed communities and from 1.1 to 1.6 ppb for exposed communities. For a community in a swine production area, ambient NH(3) and H(2)S concentrations were found to be higher than those communities not in a swine production area; however, that difference was not significant and they were within air quality standards for public health and safety. Odor concentrations showed no significant difference between the nonexposed and exposed communities and between evening and morning periods. Odor intensities were found to be significantly higher in the communities within swine production areas. More research will be required to fully understand the correlation between specific physical symptoms from residents and the presence of odors from swine production.

Seasonal variations in work-related health effects in swine farm workers.

The aim of the project was to investigate whether there were diminished health effects in swine farm workers during summer compared with winter, as seasonal differences in concentrations of bioaerosols have been reported. Twenty-four workers were visited once during each season. Before and after a work shift, they underwent lung function testing and blood sampling. During work, they wore personal air sampling equipment. The mean endotoxin exposure of the workers was highest during winter (25,690 vs. 6,553 EU/m(3); p = 0.004). Although exposures to endotoxin and CO(2) varied between the seasons, no differences in lung function were found between them. White blood cell concentration increased over the work shift from 5.74-6.82 in winter (p < 0.0001) and from 5.80-6.38 in summer (p = 0.014). These increases differed between the two seasons (p = 0.032). Plasma tumour necrosis factor concentrations fell over the work shift only during winter (1.34-1.24 pg/ml (p = 0.03) (p = 0.014 for the difference between seasons). Plasma interleukin-6 increased over the work shift independently of season (p = 0.0006). The study supported our hypothesis of adverse effects on lung function and immune system, but less so during summer than during winter among Quebec swine farm workers.