Seventeen-year study reveals fluctuations in key ecological indicators on two reef crests in Cuba.

Reef crests in the Caribbean have lost approximately 80% of the foundational habitat-forming coral Acropora palmata (Lamarck, 1816), with declines registered as early as the 1950s mainly from anthropogenic causes. We studied two reef crests in the northwestern region of Cuba over 17 years (2005 to 2021) to evaluate temporal changes in coral cover, dominated by A. palmata, and their potential drivers. The density of A. palmata generally showed a negative trend at both reefs, with the lowest density recorded in 2021 at 0.2 ± 0.05 col. m-2 at Playa Baracoa and 1.0 ± 0.1 col. m-2 at Rincon de Guanabo. The mean size of the colonies in the two reefs also decreased over time. In Playa Baracoa, the mean diameter of A. palmata colonies decreased from 2012 at 67 ± 5.9 cm to 2013 at 34 ± 2.2 cm, whereas in Rincon de Guanabo, a change in diameter was evident from 2015 at 44.3 ± 2.3 to 2021 at 21.6 ± 0.9 cm. Adult colonies (10 cm-50 cm diameter) predominated in most years on both reefs. The populations of A. palmata on both reefs were healthy, with an average of 70% colonies in good condition during the study period. However, A. palmata cover decreased by almost half by 2021, to 8.6% in Playa Baracoa and 16.8% in Rincon de Guanabo. By contrast, macroalgal cover increased two-fold to 87.1% in Playa Baracoa and four-fold to 77.2% in Rincon de Guanabo. The density of the sea urchin Diadema antillarum was higher in Playa Baracoa than in Rincon de Guanabo. The highest densities were 2.8 ± 0.2 ind. m-2 in Playa Baracoa in 2005 and 0.1 ± 0.03 ind. m-2 in Rincon de Guanabo in 2008. Although our results show an overall decline of A. palmata (density and percent cover) and an increase in macroalgae, these two reef crests are in better condition than most reefs in the Caribbean in terms of the density and health of A. palmata populations, and the density of D. antillarum at Playa Baracoa. Our results are important in establishing a management plan to ensure the condition of these reef crests does not degrade further.

Does depth divide? Variable genetic connectivity patterns among shallow and mesophotic Montastraea cavernosa coral populations across the Gulf of Mexico and western Caribbean.

Despite general declines in coral reef ecosystems in the tropical western Atlantic, some reefs, including mesophotic reefs (30-150 m), are hypothesized to function as coral refugia due to their relative isolation from anthropogenic stressors. Understanding the connectivity dynamics among these putative refugia and more degraded reefs is critical to develop effective management strategies that promote coral metapopulation persistence and recovery. This study presents a geographically broad assessment of shallow (<30 m) and mesophotic (>30 m) connectivity dynamics of the depth-generalist coral species Montastraea cavernosa. Over 750 coral genets were collected across the Northwest and Southern Gulf of Mexico, Florida, Cuba, and Belize, and ~5000 SNP loci were generated to quantify high-resolution genetic structure and connectivity among these populations. Generally, shallow and mesophotic populations demonstrated higher connectivity to distant populations within the same depth zone than to adjacent populations across depth zones. However, exceptions to this pattern include the Northwest Gulf of Mexico and the Florida Keys which exhibited relatively high vertical genetic connectivity. Furthermore, estimates of recent gene flow emphasize that mesophotic M. cavernosa populations are not significant sources for their local shallow counterparts, except for the Northwest Gulf of Mexico populations. Location-based differences in vertical connectivity are likely a result of diverse oceanographic and environmental conditions that may drive variation in gene flow and depth-dependent selection. These results highlight the need to evaluate connectivity dynamics and refugia potential of mesophotic coral species on a population-by-population basis and to identify stepping-stone populations that warrant incorporation in future international management approaches.

Morphometric responses of two zooxanthellate octocorals along a water quality gradient in the Cuban northwestern coast.

Octocoral abundance is increasing on Caribbean reefs, and one of the possible causes is their vertical morphological plasticity that allows them to grow above the substrate to reduce the effect of processes that occur in it (e.g., scour by sediments) as well as adapt to environmental gradients. The aim of this study was to determine the morphometric response of two octocorals species (Eunicea flexuosa and Plexaura kükenthali) with different life strategies in a water quality gradient. The research was carried out between 2008 and 2016 on eight forereefs of northwest Cuba. Different morphometric indicators were measured in the colonies of both species found within a belt transect (100 x 2 m) randomly located at each site. The lowest means in height, diameter, number of terminal branches/colony, cover index, and least arborescent colonies of E. flexuosa were detected at the sites with the greatest anthropogenic pollution. The water quality gradient did not explain the variability of the five morphometric indicators of P. kükenthali. However, hydrodynamic stress was the factor that most negatively affected the morphometry of this species. The chronic effect of poor water quality over time resulted in more small sized colonies of E. flexuosa at the polluted site, probably due to higher mortality. The size distribution of P. kükenthali also showed the same trend but at the sites with greater hydrodynamic stress. These results show that the morphometric response of octocorals along a water quality gradient is species-specific. This study suggests that poor water quality decreases the size and thus availability of habitat provided by octocorals sensitive to that factor (e.g., E. flexuosa) while other tolerant species (e.g., P. kükenthali) could provide the habitat of several organisms in a scenario of increasing anthropogenic pollution.

Coral reef fish assemblages exhibit signs of depletion in two protected areas from the eastern of Los Canarreos archipelago (Cuba, Caribbean Sea).

Understanding the impact of marine protected areas on the distribution and composition of fishes is key to the protection and management of coral reef ecosystems, and especially for fish-based activities such as SCUBA diving and recreational fishing. The aim of this research is to compare the ichthyofauna structure in three areas in the eastern part of Los Canarreos archipelago in Cuba with different management schemes: Cayo Campos-Cayo Rosario Fauna Refuge (CCCR), Cayo Largo Ecological Reserve (CL) and non-protected area (nMPA), and considering habitat differences and depth variation. A total of 131 video transects were conducted using diver operated stereo-video (stereo-DOV) in November, 2015 in backreef and forereef along the CCCR, CL and the adjacent nMPA. We recorded 84 species and 27 functional groups suggesting high complementarity of functions. Several multispecies schools were observed along surveys, which explain the biomass peaks in some sites, mainly for Lutjanidae, Haemulidae and Carangidae. A concerning issue was the bare representation of critical functional groups and threatened species. The effect of sites nested within habitats was significant and the most important driver structuring fish assemblages, while MPA condition was not evident. Favorable habitat features (habitat heterogeneity and surrounding coastal ecosystems) are likely enhancing fish assemblages and counteracting the effects of pouching derived from insufficient management. We recommend immediate actions within a strategy of precautionary management including, but not limited to, the appointment of staff for the administration of CL, frequent monitoring and effective enforcement.

Corrigendum to "Dataset of octocoral assemblages in fore reefs in the northwestern region of Cuba" [Data in Brief 31 (2020) 1-7/DIB-D-20-00391].

[This corrects the article DOI: 10.1016/j.dib.2020.105790.].

Stable nitrogen isotopes in octocorals as an indicator of water quality decline from the northwestern region of Cuba.

Eutrophication is one of the causes of the degradation of reefs worldwide. The aim of this research is to determine if sewage discharge reaches the fore reefs at northwest of Cuba using δ15N in tissues of the octocorals Eunicea flexuosa and Plexaura kuekenthali and the concentration of microbiological and physical-chemical variables. Thirteen reefs at 10-m depth were selected near river basins and far from the urban and industrial development of Havana City. Branch tips of both species were collected, the concentrations of nutrient and microorganisms in water samples were quantified, and horizontal visibility in the water (Vis) was determined. Overall, δ15N of E. flexuosa ranged from 1.5 to 6.3‰ and P. kuekenthali from 1.7 to 6.7‰. The tissue of both species was significantly enriched in 15N in reefs near polluted watersheds compared with reefs far from pollution by anthropogenic activities. The δ15N of both species showed a positive and significant correlation with the concentration of fecal and total coliform bacteria, heterotrophic bacteria, and NH4+ and a negative and significant correlation with the Vis. The δ15N of the two species and microbiological and physical-chemical variables evidenced water quality decline by sewage discharge that reached reefs near polluted watersheds.

A multi-taxonomic framework for assessing relative petrochemical vulnerability of marine biodiversity in the Gulf of Mexico.

A fundamental understanding of the impact of petrochemicals and other stressors on marine biodiversity is critical for effective management, restoration, recovery, and mitigation initiatives. As species-specific information on levels of petrochemical exposure and toxicological response are lacking for the majority of marine species, a trait-based assessment to rank species vulnerabilities to petrochemical activities in the Gulf of Mexico can provide a more comprehensive and effective means to prioritize species, habitats, and ecosystems for improved management, restoration and recovery. To initiate and standardize this process, we developed a trait-based framework, applicable to a wide range of vertebrate and invertebrate species, that can be used to rank relative population vulnerabilities of species to petrochemical activities in the Gulf of Mexico. Through expert consultation, 18 traits related to likelihood of exposure, individual sensitivity, and population resilience were identified and defined. The resulting multi-taxonomic petrochemical vulnerability framework can be adapted and applied to a wide variety of species groups and geographic regions. Additional recommendations and guidance on the application of the framework to rank species vulnerabilities under specific petrochemical exposure scenarios, management needs or data limitations are also discussed.

Population genetic structure of the great star coral, Montastraea cavernosa, across the Cuban archipelago with comparisons between microsatellite and SNP markers.

Coral reef habitats surrounding Cuba include relatively healthy, well-developed shallow and mesophotic (30-150 m) scleractinian communities at the cross-currents of the Tropical Western Atlantic (TWA). However, Cuba's coral communities are not immune to the declines observed throughout the TWA, and there is limited information available regarding genetic connectivity, diversity, and structure among these populations. This represents an immense gap in our understanding of coral ecology and population dynamics at both local and regional scales. To address this gap, we evaluated the population genetic structure of the coral Montastraea cavernosa across eight reef sites surrounding Cuba. Colonies were genotyped using nine microsatellite markers and > 9,000 single nucleotide polymorphism (SNP) markers generated using the 2bRAD approach to assess fine-scale genetic structure across these sites. Both the microsatellite and SNP analyses identified patterns of genetic differentiation among sample populations. While the microsatellite analyses did not identify significant genetic structure across the seven shallow M. cavernosa sampling sites, the SNP analyses revealed significant pairwise population differentiation, suggesting that differentiation is greater between eastern and western sites. This study provides insight into methodological differences between microsatellite and SNP markers including potential trade-offs between marker-specific biases, sample size, sequencing costs, and the ability to resolve subtle patterns of population genetic structure. Furthermore, this study suggests that locations in western Cuba may play important roles in this species' regional metapopulation dynamics and therefore may merit incorporation into developing international management efforts in addition to the local management the sites receive.

Dataset of octocoral assemblages in fore reefs in the northwestern region of Cuba.

This dataset accompanies "Spatio temporal variation in octocoral assemblages along a water quality gradient in the northwestern region of Cuba" [1]. Sampling units were quadrats of 1 m2 (each 1 x 1 m), positioned by a random-systematic design at 10 m depth on the rocky-coral substrate. The number of colonies of octocoral species in thirteen fore reefs was counted to determine the composition, richness and abundance (expressed as density) of octocorals for the period from 2008-2015. Density of six species that most influenced spatial variation of octocoral assemblage structure was compared [1]. Species richness of octocorals was determined in each reef and for the 2008-2015 period. The accumulated species richness was calculated based on 100 randomizations without replacement. This dataset can be used in meta-analysis studies on spatial variations of the structure of octocoral assemblages related to anthropogenic activities and climate variability in the Caribbean Sea, as well as, experimental studies on thresholds to specific pollutants.

Spatio temporal variation in octocoral assemblages along a water quality gradient in the northwestern region of Cuba.

Rivers are the main sources of nutrients to coastal zones. Therefore, the effects of water quality degradation on octocoral assemblages and their relationship with microbiological and physical-chemical variables were determined in reefs close to river basins in the northwestern region of Cuba. The evaluations were carried out in 1 m2 frames at a depth of 10 m in 13 fore reefs. The highest concentrations of the microbiological variables and hydrochemicals and the lowest horizontal visibility in the water column were detected in the reefs near the river basins. The lowest richness, diversity and octocoral density were related to higher concentrations of fecal coliform, total coliform and fecal streptococcal bacteria, sediment accumulation on the bottom and lower visibility. The structure of the octocoral assemblages varied significantly between reefs due to fecal organic pollution. Water quality deterioration in the reefs near the river basins has negatively affected the octocoral assemblages.

Microbial signatures of protected and impacted Northern Caribbean reefs: changes from Cuba to the Florida Keys.

There are a few baseline reef-systems available for understanding the microbiology of healthy coral reefs and their surrounding seawater. Here, we examined the seawater microbial ecology of 25 Northern Caribbean reefs varying in human impact and protection in Cuba and the Florida Keys, USA, by measuring nutrient concentrations, microbial abundances, and respiration rates as well as sequencing bacterial and archaeal amplicons and community functional genes. Overall, seawater microbial composition and biogeochemistry were influenced by reef location and hydrogeography. Seawater from the highly protected 'crown jewel' offshore reefs in Jardines de la Reina, Cuba had low concentrations of nutrients and organic carbon, abundant Prochlorococcus, and high microbial community alpha diversity. Seawater from the less protected system of Los Canarreos, Cuba had elevated microbial community beta-diversity whereas waters from the most impacted nearshore reefs in the Florida Keys contained high organic carbon and nitrogen concentrations and potential microbial functions characteristic of microbialized reefs. Each reef system had distinct microbial signatures and within this context, we propose that the protection and offshore nature of Jardines de la Reina may preserve the oligotrophic paradigm and the metabolic dependence of the community on primary production by picocyanobacteria.

Role of geographical provenance in the response of silver fir seedlings to experimental warming and drought.

Changes in climate can alter the distribution and population dynamics of tree species by altering their recruitment patterns, especially at range edges. However, geographical patterns of genetic diversity could buffer the negative consequences of changing climate at rear range edges where populations might also harbour individuals with drought-adapted genotypes. Silver fir (Abies alba Mill.) reaches its south-western distribution limit in the Spanish Pyrenees, where recent climatic dieback events have disproportionately affected westernmost populations. We hypothesized that silver fir populations from the eastern Pyrenees are less vulnerable to the expected changing climate due to the inclusion of drought-resistant genotypes. We performed an experiment under strictly controlled conditions simulating projected warming and drought compared with current conditions and analysed physiology, growth and survival of silver fir seedlings collected from eastern and western Pyrenean populations. Genetic analyses separated eastern and western provenances in two different lineages. Climate treatments affected seedling morphology and survival of both lineages in an overall similar way: elevated drought diminished survival and induced a higher biomass allocation to roots. Increased temperature and drought provoked more negative stem water potentials and increased δ13C ratios in leaves. Warming reduced nitrogen concentration and increased soluble sugar content in leaves, whereas drought increased nitrogen concentration. Lineage affected these physiological parameters, with western seedlings being more sensitive to warming and drought increase in terms of δ13C, nitrogen and content of soluble sugars. Our results demonstrate that, in A. alba, differences in the physiological response of this species to drought are also associated with differences in biogeographical history.

High spatial variability of coral, sponges and gorgonian assemblages in a well preserved reef.

The main goal of this research was to obtain baseline field data of the composition of sponges, corals, and gorgonian assemblages that can be used as a reference for future analyses of anthropogenic impact. We tested the hypothesis that relatively homogeneous and well preserved reef units can present notable natural variability in the composition of their communities which are unassociated with changes in land proximity or a human impact gradient. Research was carried out in July 2006 at Los Colorados reef, located in the northwestern region of Pinar del Río Province, Cuba at 12 sampling stations. The biotopes selected were crest, terrace edge and spur and grove. Ecological indicators were diversity of corals, species composition, density of corals, hydrocorals, gorgonians and sponges, and density of selected coral species. A total of 2659 colonies of scleractineans corals representing 36 species were counted. The most abundant species in the crest biotope were Millepora alcicornis, Acropora palmata and Porites astreoides; in the terrace edge and spur and grove, the most abundant species were Siderastrea siderea, Stephanocoenia intersepta, Porites astreoides, Agaricia agaricites and Montastraea cavernosa. We found differences among sites for several indicators (e.g. density of corals, sponges and gorgonians and for selected species), but they could not be associated to any gradient of land influence or human impact. Therefore, sites inside a relatively homogeneous reef unit can present notable natural differences in the composition of their communities.

High spatial variability of coral, sponges and gorgonian assemblages in a well preserved reef

The main goal of this research was to obtain baseline field data of the composition of sponges, corals, and gorgonian assemblages that can be used as a reference for future analyses of anthropogenic impact. We tested the hypothesis that relatively homogeneous and well preserved reef units can present notable natural variability in the composition of their communities which are unassociated with changes in land proximity or a human impact gradient. Research was carried out in July 2006 at Los Colorados reef, located in the northwestern region of Pinar del Río Province, Cuba at 12 sampling stations. The biotopes selected were crest, terrace edge and spur and grove. Ecological indicators were diversity of corals, species composition, density of corals, hydrocorals, gorgonians and sponges, and density of selected coral species. A total of 2659 colonies of scleractineans corals representing 36 species were counted. The most abundant species in the crest biotope were Millepora alcicornis, Acropora palmata and Porites astreoides; in the terrace edge and spur and grove, the most abundant species were Siderastrea siderea, Stephanocoenia intersepta, Porites astreoides, Agaricia agaricites and Montastraea cavernosa. We found differences among sites for several indicators (e.g. density of corals, sponges and gorgonians and for selected species), but they could not be associated to any gradient of land influence or human impact. Therefore, sites inside a relatively homogeneous reef unit can present notable natural differences in the composition of their communities. Rev. Biol. Trop. 58 (2): 621-634. Epub 2010 June 02.

El objetivo principal de la investigación fue obtener una línea base de la composición de las comunidades de esponjas, corales y gorgonias que pueda ser utilizada como referencia para futuros análisis de impacto antrópico. Nuestra hipótesis es que un arrecife relativamente homogéneo y bien conservado, presenta una variabilidad natural notable en la composición de sus comunidades, lo cual no está asociado con cambios en la proximidad a tierra o a un gradiente de impacto humano. La investigación se llevó a cabo en julio de 2006, en 12 estaciones de muestreo ubicadas en el arrecife de Los Colorados, en la región noroccidental de la Provincia de Pinar del Río, Cuba. Los biotopos seleccionados fueron cresta, veril y camellones. Los indicadores ecológicos estimados fueron: diversidad de corales, composición por especies, densidad de corales, hidrocorales, gorgonias y esponjas, y densidad de especies de corales seleccionadas. Se contaron 2 659 colonias de corales escleractíneos pertenecientes a 36 especies. Las especies más abundantes en el biotopo de cresta fueron: Millepora alcicornis, Acropora palmata y Porites astreoides; mientras que en el veril y los camellones fueron Siderastrea siderea, Stephanocoenia intersepta, Porites astreoides, Agaricia agaricites y Montastraea cavernosa. Entre sitios, se encontraron diferencias significativas estadísticamente para varios indicadores (densidad de corales, esponjas y gorgonias y densidad de especies seleccionadas), pero ello no pudo asociarse con ningún gradiente de uso de la tierra o de impacto humano. Por lo tanto, sitios dentro de un arrecife relativamente homogéneo pueden presentar diferencias notables en la composición de sus comunidades.