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1.
Kathmandu Univ Med J (KUMJ) ; 20(77): 111-113, 2022.
Artículo en Inglés | MEDLINE | ID: mdl-36273303

RESUMEN

Laparoscopic cholecystectomy is the gold standard procedure for symptomatic cholelithiasis. During the procedure the cystic duct is ligated with titanium clips. Migration of these clips after cholecystectomy is a rare complication and may result in stone formation in common bile duct (CBD). We are here discussing a case of a 29 years female who presented with choledocholithiasis 10 years after laparoscopic cholecystectomy. The clip was incidentally discovered during endoscopic retrograde cholangiopancreatography (ERCP) and stone extraction. The patient was managed successfully at our center.


Asunto(s)
Colecistectomía Laparoscópica , Coledocolitiasis , Femenino , Humanos , Colecistectomía Laparoscópica/efectos adversos , Colecistectomía Laparoscópica/métodos , Titanio , Conducto Colédoco/cirugía , Coledocolitiasis/cirugía , Instrumentos Quirúrgicos/efectos adversos
2.
Water Sci Technol ; 77(3-4): 1048-1061, 2018 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-29488968

RESUMEN

Raw and partially treated wastewater has been widely used to maintain the global water demand. Presence of viable helminth ova and larvae in the wastewater raised significant public health concern especially when used for agriculture and aquaculture. Depending on the prevalence of helminth infections in communities, up to 1.0 × 103 ova/larvae can be presented per litre of wastewater and 4 gm (dry weight) of sludge. Multi-barrier approaches including pathogen reduction, risk assessment, and exposure reduction have been suggested by health regulators to minimise the potential health risk. However, with a lack of a sensitive and specific method for the quantitative detection of viable helminth ova from wastewater, an accurate health risk assessment is difficult to achieve. As a result, helminth infections are difficult to control from the communities despite two decades of global effort (mass drug administration). Molecular methods can be more sensitive and specific than currently adapted culture-based and vital stain methods. The molecular methods, however, required more and thorough investigation for its ability with accurate quantification of viable helminth ova/larvae from wastewater and sludge samples. Understanding different cell stages and corresponding gene copy numbers is pivotal for accurate quantification of helminth ova/larvae in wastewater samples. Identifying specific genetic markers including protein, lipid, and metabolites using multiomics approach could be utilized for cheap, rapid, sensitive, specific and point of care detection tools for helminth ova and larva in the wastewater.


Asunto(s)
Helmintos , Óvulo , Aguas Residuales/análisis , Contaminantes del Agua/aislamiento & purificación , Animales , Monitoreo del Ambiente/métodos , Humanos , Medición de Riesgo
3.
BMC Res Notes ; 10(1): 730, 2017 Dec 11.
Artículo en Inglés | MEDLINE | ID: mdl-29228975

RESUMEN

OBJECTIVE: The prediabetes and cardiovascular complications studies proposes to develop a screening protocol for diabetes cardiovascular risk, and strategies for holistic management amongst others. Over 500 participants were recruited in the first 2 years of rural community research screening. Specific for this report, various published findings were reviewed. The objective is to summarize research outcomes and itemize limitations as they constitute basis of future directions. RESULTS: Affordability and availability are major confounding behavioural change wheel factors in the rural community. 4.9% prevalence of prediabetes, which may be lower or non-significantly different in urban areas. Hyperglycaemia co-morbidity with dyslipidaemia (5.0%), obesity (3.1%) and hypertension (1.8%) were observed. Limitation of the study includes participants being mostly over 60 years old, which has created impetus for the Global Alliance on Chronic Diseases agenda on vulnerability of older adults to diabetes being a new direction of the collaboration. Other directions in Australia and Nepal focus on patients with chronic kidney disease with or without cardiovascular complications. This report highlights the need to translational research.


Asunto(s)
Enfermedades Cardiovasculares/complicaciones , Cooperación Internacional , Estado Prediabético/complicaciones , Antropometría , Enfermedades Cardiovasculares/epidemiología , Humanos , Estado Prediabético/epidemiología , Prevalencia
4.
Case Rep Urol ; 2017: 6270436, 2017.
Artículo en Inglés | MEDLINE | ID: mdl-28702269

RESUMEN

Pheochromocytoma associated with inferior vena cava (IVC) thrombosis is very rare. A 27-year-old female presented with right flank pain and hypertensive urgency. Contrast-enhanced CT abdomen and gadolinium-contrast MRI abdomen revealed right adrenal mass suspicious of malignancy with invasion and compression to the right IVC wall along with IVC thrombus extending from the level of renal veins to the level of confluence with hepatic veins. Her routine laboratory investigations including 24-hour urine fractionated metanephrines, vanillylmandelic acid, and cortisol were normal. Right adrenalectomy with IVC thrombectomy was done. Perioperative period was uneventful. Histopathology of the mass turned out to be pheochromocytoma with thrombus revealing fibroadipose tissue with fibrin. Pheochromocytoma may present with IVC thrombus as well as normal serum and urinary markers. Thus, clinical suspicion is imperative in perioperative management of adrenal mass.

5.
Water Sci Technol ; 75(11-12): 2615-2621, 2017 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-28617281

RESUMEN

Accurate quantitative measurement of viable hookworm ova from environmental samples is the key to controlling hookworm re-infections in the endemic regions. In this study, the accuracy of three quantitative detection methods [culture-based, vital stain and propidium monoazide-quantitative polymerase chain reaction (PMA-qPCR)] was evaluated by enumerating 1,000 ± 50 Ancylostoma caninum ova in the laboratory. The culture-based method was able to quantify an average of 397 ± 59 viable hookworm ova. Similarly, vital stain and PMA-qPCR methods quantified 644 ± 87 and 587 ± 91 viable ova, respectively. The numbers of viable ova estimated by the culture-based method were significantly (P < 0.05) lower than vital stain and PMA-qPCR methods. Therefore, both PMA-qPCR and vital stain methods appear to be suitable for the quantitative detection of viable hookworm ova. However, PMA-qPCR would be preferable over the vital stain method in scenarios where ova speciation is needed.


Asunto(s)
Ancylostoma/aislamiento & purificación , Azidas/metabolismo , Azul de Metileno/química , Parasitología/métodos , Propidio/análogos & derivados , Reacción en Cadena en Tiempo Real de la Polimerasa/métodos , Coloración y Etiquetado/métodos , Animales , Óvulo , Parasitología/instrumentación , Propidio/metabolismo
6.
Environ Sci Pollut Res Int ; 23(18): 18639-48, 2016 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-27306209

RESUMEN

In this study, we have evaluated the efficacy of propidium monoazide quantitative polymerase chain reaction (PMA-qPCR) to differentiate between viable and non-viable Ancylostoma caninum ova. The newly developed method was validated using raw wastewater seeded with known numbers of A. caninum ova. Results of this study confirmed that PMA-qPCR has resulted in average of 88 % reduction (P < 0.05) in gene copy numbers for 50 % viable +50 % non-viable when compared with 100 % viable ova. A reduction of 100 % in gene copies was observed for 100 % non-viable ova when compared with 100 % viable ova. Similar reductions (79-80 %) in gene copies were observed for A. caninum ova-seeded raw wastewater samples (n = 18) collected from wastewater treatment plants (WWTPs) A and B. The newly developed PMA-qPCR method was applied to determine the viable ova of different helminths (A. caninum, A. duodenale, Necator americanus and Ascaris lumbricoides) in raw wastewater, human fecal and soil samples. None of the unseeded wastewater samples were positive for the above-mentioned helminths. N. americanus and A. lumbricoides ova were found in unseeded human fecal and soil samples. For the unseeded human fecal samples (1 g), an average gene copy concentration obtained from qPCR and PMA-qPCR was found to be similar (6.8 × 10(5) ± 6.4 × 10(5) and 6.3 × 10(5) ± 4.7 × 10(5)) indicating the presence of viable N. americanus ova. Among the 24 unseeded soil samples tested, only one was positive for A. lumbricoides. The mean gene copy concentration in the positively identified soil sample was 1.0 × 10(5) ± 1.5 × 10(4) (determined by qPCR) compared to 4.9 × 10(4) ± 3.7 × 10(3) (determined by PMA-qPCR). The newly developed PMA-qPCR methods were able to detect viable helminth ova from wastewater and soil samples and could be adapted for health risk assessment.


Asunto(s)
Monitoreo del Ambiente/métodos , Heces/parasitología , Helmintos/fisiología , Óvulo , Propidio , Reacción en Cadena en Tiempo Real de la Polimerasa/métodos , Suelo/parasitología , Aguas Residuales/parasitología , Animales , Azidas , Humanos , Propidio/análogos & derivados
7.
Appl Environ Microbiol ; 82(14): 4379-4386, 2016 07 15.
Artículo en Inglés | MEDLINE | ID: mdl-27208100

RESUMEN

UNLABELLED: Avian and possum fecal droppings may negatively impact roof-harvested rainwater (RHRW) water quality due to the presence of zoonotic pathogens. This study was aimed at evaluating the performance characteristics of a possum feces-associated (PSM) marker by screening 210 fecal and wastewater samples from possums (n = 20) and a range of nonpossum hosts (n = 190) in Southeast Queensland, Australia. The host sensitivity and specificity of the PSM marker were 0.90 and 0.95 (maximum value, 1.00), respectively. The mean concentrations of the GFD marker in possum fecal DNA samples (8.8 × 10(7) gene copies per g of feces) were two orders of magnitude higher than those in the nonpossum fecal DNA samples (5.0 × 10(5) gene copies per g of feces). The host sensitivity, specificity, and concentrations of the avian feces-associated GFD marker were reported in our recent study (W. Ahmed, V. J. Harwood, K. Nguyen, S. Young, K. Hamilton, and S. Toze, Water Res 88:613-622, 2016, http://dx.doi.org/10.1016/j.watres.2015.10.050). The utility of the GFD and PSM markers was evaluated by testing a large number of tank water samples (n = 134) from the Brisbane and Currumbin areas. GFD and PSM markers were detected in 39 of 134 (29%) and 11 of 134 (8%) tank water samples, respectively. The GFD marker concentrations in PCR-positive samples ranged from 3.7 × 10(2) to 8.5 × 10(5) gene copies per liter, whereas the concentrations of the PSM marker ranged from 2.0 × 10(3) to 6.8 × 10(3) gene copies per liter of water. The results of this study suggest the presence of fecal contamination in tank water samples from avian and possum hosts. This study has established an association between the degradation of microbial tank water quality and avian and possum feces. Based on the results, we recommend disinfection of tank water, especially for tanks designated for potable use. IMPORTANCE: The use of roof-harvested rainwater (RHRW) for domestic purposes is a globally accepted practice. The presence of pathogens in rainwater tanks has been reported by several studies, supporting the necessity for the management of potential health risks. The sources of fecal pollution in rainwater tanks are unknown. However, the application of microbial source tracking (MST) markers has the potential to identify the sources of fecal contamination in a rainwater tank. In this study, we provide evidence of avian and possum fecal contamination in tank water samples using molecular markers. This study established a potential link between the degradation of the microbial quality of tank water and avian and possum feces.


Asunto(s)
Heces/microbiología , Microbiología del Agua , Contaminantes del Agua/análisis , Contaminación del Agua , Animales , Aves , ADN Bacteriano/análisis , ADN Bacteriano/genética , Reacción en Cadena de la Polimerasa , Queensland , Trichosurus
8.
Parasitol Res ; 115(9): 3485-92, 2016 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-27236650

RESUMEN

Differentiation between viable and non-viable hookworm ova in environmental samples is necessary in order to implement strategies to mitigate re-infections in endemic regions. In this study, an untargeted metabolic profiling method was developed that utilised gas chromatography-mass spectrometry (GC-MS) in order to investigate hookworm ova viability. Ancylostoma caninum was used to investigate the metabolites within viable and non-viable ova. Univariate and multivariate statistical analyses of the data resulted in the identification of 53 significant metabolites across all hookworm ova samples. The major compounds observed in viable and non-viable hookworm ova were tetradecanoic acid, commonly known as myristic acid [fold change (FC) = 0.4], and dodecanoic acid, commonly known as lauric acid (FC = 0.388). Additionally, the viable ova had self-protecting metabolites such as prostaglandins, a typical feature absent in non-viable ova. The results of this study demonstrate that metabolic profiling using GC-MS methods can be used to determine the viability of canine hookworm ova. Further studies are needed to assess the applicability of metabolic profiling using GC-MS to detect viable hookworm ova in the mixed (viable and non-viable) populations from environmental samples and identify the metabolites specific to human hookworm species.


Asunto(s)
Ancylostoma/metabolismo , Anquilostomiasis/veterinaria , Enfermedades de los Perros/parasitología , Metaboloma/fisiología , Óvulo/fisiología , Ancylostoma/fisiología , Anquilostomiasis/parasitología , Anquilostomiasis/patología , Animales , Perros , Heces/parasitología , Cromatografía de Gases y Espectrometría de Masas , Humanos , Ácidos Láuricos/metabolismo , Ácido Mirístico/metabolismo , Prostaglandinas/metabolismo
9.
Appl Environ Microbiol ; 82(4): 1316-1323, 2016 02 15.
Artículo en Inglés | MEDLINE | ID: mdl-26682850

RESUMEN

Recreational and potable water supplies polluted with human wastewater can pose a direct health risk to humans. Therefore, sensitive detection of human fecal pollution in environmental waters is very important to water quality authorities around the globe. Microbial source tracking (MST) utilizes human fecal markers (HFMs) to detect human wastewater pollution in environmental waters. The concentrations of these markers in raw wastewater are considered important because it is likely that a marker whose concentration is high in wastewater will be more frequently detected in polluted waters. In this study, quantitative PCR (qPCR) assays were used to determine the concentrations of fecal indicator bacteria (FIB) Escherichia coli and Enterococcus spp., HFMs Bacteroides HF183, human adenoviruses (HAdVs), and polyomaviruses (HPyVs) in raw municipal wastewater influent from various climatic zones in Australia. E. coli mean concentrations in pooled human wastewater data sets (from various climatic zones) were the highest (3.2 × 10(6) gene copies per ml), followed by those of HF183 (8.0 × 10(5) gene copies per ml) and Enterococcus spp. (3.6 × 10(5) gene copies per ml). HAdV and HPyV concentrations were 2 to 3 orders of magnitude lower than those of FIB and HF183. Strong positive and negative correlations were observed between the FIB and HFM concentrations within and across wastewater treatment plants (WWTPs). To identify the most sensitive marker of human fecal pollution, environmental water samples were seeded with raw human wastewater. The results from the seeding experiments indicated that Bacteroides HF183 was more sensitive for detecting human fecal pollution than HAdVs and HPyVs. Since the HF183 marker can occasionally be present in nontarget animal fecal samples, it is recommended that HF183 along with a viral marker (HAdVs or HPyVs) be used for tracking human fecal pollution in Australian environmental waters.


Asunto(s)
Adenovirus Humanos/aislamiento & purificación , Enterobacteriaceae/aislamiento & purificación , Heces/microbiología , Poliomavirus/aislamiento & purificación , Microbiología del Agua , Contaminación del Agua/análisis , Animales , Australia , Humanos , Reacción en Cadena en Tiempo Real de la Polimerasa
10.
Kathmandu Univ Med J (KUMJ) ; 14(56): 352-356, 2016.
Artículo en Inglés | MEDLINE | ID: mdl-29371493

RESUMEN

Background Most of the recent evidences suggest for risk-based management of non muscle invasive bladder cancer (NMIBC) to reduce the risk of recurrence and progression. Objective This study was conducted to assess the recurrence and progression of non muscle invasive bladder cancer in Nepalese patients using European Organization for Research and Treatment of Cancer (EORTC) risk tables and to assess the effectiveness of intravesical therapy to reduce the risk of recurrence. Method A prospective observational single centre study was conducted at Tribhuvan University Teaching Hospital from January 2010- December 2012. Forty six patients with non muscle invasive bladder cancer who underwent transurethral resection of bladder tumor and completed two years follow up were included. According to the European Organization for Research and Treatment of Cancer (EORTC) risk table, the patients were divided into low, intermediate and high risk groups. The patients received postoperative adjuvant therapy and surveillance as per the European Association of Urology guidelines. Result Among the 46 patients, the overall two year recurrence and progression rate was 8 (17%) and 1 (2%) respectively. Out of seven patients in low risk category, none of them developed recurrence or progression of disease. Out of 15 patients in intermediate risk category the one year and two year recurrence rate was 13% and 20% respectively. Out of 24 patients in high risk category the one and two year recurrence rate was 17% and 21% respectively. The risk reduction by use of intravesical Bacillus Calmette Guerin (BCG) for recurrence in high risk category was 58% and 60% in first and second year respectively. In our study, the overall and individual risk group, the one and two year recurrence rate was lower than that predicted by European Organization for Research and Treatment of Cancer risk table. Conclusion Risk-based management of non muscle invasive bladder cancer by using the European Organization for Research and Treatment of Cancer risk table is a useful method of management, though its prediction rates are lower in Nepalese population.


Asunto(s)
Neoplasias de la Vejiga Urinaria/patología , Neoplasias de la Vejiga Urinaria/cirugía , Administración Intravesical , Anciano , Progresión de la Enfermedad , Femenino , Hospitales de Enseñanza , Humanos , Masculino , Persona de Mediana Edad , Recurrencia Local de Neoplasia , Nepal/epidemiología , Estudios Prospectivos , Medición de Riesgo , Factores de Riesgo
11.
Water Air Soil Pollut ; 227(9): 327, 2016.
Artículo en Inglés | MEDLINE | ID: mdl-32214527

RESUMEN

Pathogenic human viruses cause over half of gastroenteritis cases associated with recreational water use worldwide. They are difficult to concentrate from environmental waters due to low numbers and small sizes. Rapid enumeration of viruses by quantitative polymerase chain reaction (qPCR) has the potential to improve water quality analysis and risk assessment. However, capturing and recovering these viruses from environmental water remain formidable barriers to routine use. Here, we compared the recovery efficiencies of human adenoviruses (HAdVs) and human polyomaviruses (HPyVs) from 10-L river water samples seeded with raw human wastewater (100 and 10 mL) using hollow-fiber ultrafiltration (HFUF) and glass wool filter (GWF) methods. The mean recovery efficiencies of HAdVs in river water samples through HFUF were 36 and 86 % for 100 and 10 mL of seeded human wastewater, respectively. In contrast, the estimated mean recovery efficiencies of HAdVs in river water samples through GWF were 1.3 and 3 % for 100 and 10 mL seeded raw human wastewater, respectively. Similar trends were also observed for HPyVs. Recovery efficiencies of HFUF method were significantly higher (P < 0.05) than GWF for both HAdVs and HPyVs. Our results clearly suggest that HFUF would be a preferred method for concentrating HAdVs and HPyVs from river water followed by subsequent detection and quantification with PCR/qPCR assays.

12.
Exp Parasitol ; 159: 160-7, 2015 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-26358269

RESUMEN

Hookworm infection contributes around 700 million infections worldwide especially in developing nations due to increased use of wastewater for crop production. The effective recovery of hookworm ova from wastewater matrices is difficult due to their low concentrations and heterogeneous distribution. In this study, we compared the recovery rates of (i) four rapid hookworm ova concentration methods from municipal wastewater, and (ii) two concentration methods from sludge samples. Ancylostoma caninum ova were used as surrogate for human hookworm (Ancylostoma duodenale and Necator americanus). Known concentration of A. caninum hookworm ova were seeded into wastewater (treated and raw) and sludge samples collected from two wastewater treatment plants (WWTPs) in Brisbane and Perth, Australia. The A. caninum ova were concentrated from treated and raw wastewater samples using centrifugation (Method A), hollow fiber ultrafiltration (HFUF) (Method B), filtration (Method C) and flotation (Method D) methods. For sludge samples, flotation (Method E) and direct DNA extraction (Method F) methods were used. Among the four methods tested, filtration (Method C) method was able to recover higher concentrations of A. caninum ova consistently from treated wastewater (39-50%) and raw wastewater (7.1-12%) samples collected from both WWTPs. The remaining methods (Methods A, B and D) yielded variable recovery rate ranging from 0.2 to 40% for treated and raw wastewater samples. The recovery rates for sludge samples were poor (0.02-4.7), although, Method F (direct DNA extraction) provided 1-2 orders of magnitude higher recovery rate than Method E (flotation). Based on our results it can be concluded that the recovery rates of hookworm ova from wastewater matrices, especially sludge samples, can be poor and highly variable. Therefore, choice of concentration method is vital for the sensitive detection of hookworm ova in wastewater matrices.


Asunto(s)
Ancylostoma/aislamiento & purificación , Aguas Residuales/parasitología , Purificación del Agua/normas , Ancylostoma/genética , Animales , Centrifugación/normas , ADN de Helmintos/aislamiento & purificación , ADN Espaciador Ribosómico/análisis , Perros , Heces/parasitología , Filtración/normas , Humanos , Óvulo , Queensland , ARN Ribosómico 5.8S/genética , Reacción en Cadena en Tiempo Real de la Polimerasa/normas , Estándares de Referencia , Reproducibilidad de los Resultados , Sensibilidad y Especificidad , Aguas del Alcantarillado/parasitología , Ultrafiltración/métodos , Ultrafiltración/normas , Purificación del Agua/métodos , Australia Occidental
13.
Exp Parasitol ; 159: 5-12, 2015 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-26297680

RESUMEN

The risk of human hookworm infections from land application of wastewater matrices could be high in regions with high hookworm prevalence. A rapid, sensitive and specific hookworm detection method from wastewater matrices is required in order to assess human health risks. Currently available methods used to identify hookworm ova to the species level are time consuming and lack accuracy. In this study, a real-time PCR method was developed for the rapid, sensitive and specific detection of canine hookworm (Ancylostoma caninum) ova from wastewater matrices. A. caninum was chosen because of its morphological similarity to the human hookworm (Ancylostoma duodenale and Necator americanus). The newly developed PCR method has high detection sensitivity with the ability to detect less than one A. caninum ova from 1 L of secondary treated wastewater at the mean threshold cycle (CT) values ranging from 30.1 to 34.3. The method is also able to detect four A. caninum ova from 1 L of raw wastewater and from ∼4 g of treated sludge with mean CT values ranging from 35.6 to 39.8 and 39.8 to 39.9, respectively. The better detection sensitivity obtained for secondary treated wastewater compared to raw wastewater and sludge samples could be attributed to sample turbidity. The proposed method appears to be rapid, sensitive and specific compared to traditional methods and has potential to aid in the public health risk assessment associated with land application of wastewater matrices. Furthermore, the method can be adapted to detect other helminth ova of interest from wastewater matrices.


Asunto(s)
Ancylostoma/aislamiento & purificación , Reacción en Cadena en Tiempo Real de la Polimerasa/normas , Aguas Residuales/parasitología , Ancylostoma/genética , Animales , ADN de Helmintos/aislamiento & purificación , ADN Ribosómico/aislamiento & purificación , Perros , Heces/parasitología , Límite de Detección , Óvulo , ARN Ribosómico 5.8S/genética , Reproducibilidad de los Resultados , Sensibilidad y Especificidad , Aguas del Alcantarillado/parasitología
14.
Appl Environ Microbiol ; 81(20): 7067-77, 2015 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-26231650

RESUMEN

In this study, host-associated molecular markers and bacterial 16S rRNA gene community analysis using high-throughput sequencing were used to identify the sources of fecal pollution in environmental waters in Brisbane, Australia. A total of 92 fecal and composite wastewater samples were collected from different host groups (cat, cattle, dog, horse, human, and kangaroo), and 18 water samples were collected from six sites (BR1 to BR6) along the Brisbane River in Queensland, Australia. Bacterial communities in the fecal, wastewater, and river water samples were sequenced. Water samples were also tested for the presence of bird-associated (GFD), cattle-associated (CowM3), horse-associated, and human-associated (HF183) molecular markers, to provide multiple lines of evidence regarding the possible presence of fecal pollution associated with specific hosts. Among the 18 water samples tested, 83%, 33%, 17%, and 17% were real-time PCR positive for the GFD, HF183, CowM3, and horse markers, respectively. Among the potential sources of fecal pollution in water samples from the river, DNA sequencing tended to show relatively small contributions from wastewater treatment plants (up to 13% of sequence reads). Contributions from other animal sources were rarely detected and were very small (<3% of sequence reads). Source contributions determined via sequence analysis versus detection of molecular markers showed variable agreement. A lack of relationships among fecal indicator bacteria, host-associated molecular markers, and 16S rRNA gene community analysis data was also observed. Nonetheless, we show that bacterial community and host-associated molecular marker analyses can be combined to identify potential sources of fecal pollution in an urban river. This study is a proof of concept, and based on the results, we recommend using bacterial community analysis (where possible) along with PCR detection or quantification of host-associated molecular markers to provide information on the sources of fecal pollution in waterways.


Asunto(s)
Heces/microbiología , Marcadores Genéticos , Microbiología del Agua , Contaminación del Agua/análisis , Animales , Australia , Aves , Bovinos , Análisis por Conglomerados , ADN Ribosómico/química , ADN Ribosómico/genética , Secuenciación de Nucleótidos de Alto Rendimiento , Caballos , Humanos , Datos de Secuencia Molecular , Filogenia , ARN Ribosómico 16S/genética , Análisis de Secuencia de ADN
15.
Environ Sci Technol ; 49(5): 3084-90, 2015 Mar 03.
Artículo en Inglés | MEDLINE | ID: mdl-25648758

RESUMEN

Quantitative PCR (qPCR) assays were used to determine the concentrations of E. coli including shiga toxin-producing E. coli (STEC) associated virulence genes (eaeA, stx1, stx2, and hlyA) in ten animal species (fecal sources) and environmental water samples in Southeast Queensland, Australia. The mean Log10 concentrations and standard deviations of E. coli 23S rRNA across fecal sources ranged from 1.3 ± 0.1 (horse) to 6.3 ± 0.4 (cattle wastewater) gene copies at a test concentration of 10 ng of DNA. The differences in mean concentrations of E. coli 23S rRNA gene copies among fecal source samples were significantly different from each other (P < 0.0001). Among the virulence genes, stx2 (25%, 95% CI, 17-33%) was most prevalent among fecal sources, followed by eaeA (19%, 95% CI, 12-27%), stx1 (11%, 95% CI, 5%-17%) and hlyA (8%, 95% CI, 3-13%). The Log10 concentrations of STEC virulence genes in cattle wastewater samples ranged from 3.8 to 5.0 gene copies at a test concentration of 10 ng of DNA. Of the 18 environmental water samples tested, three (17%) were positive for eaeA and two (11%) samples were also positive for the stx2 virulence genes. The data presented in this study will aid in the estimation of quantitative microbial risk assessment (QMRA) from fecal pollution of domestic and wild animals in drinking/recreational water catchments.


Asunto(s)
Heces/microbiología , Ríos/microbiología , Escherichia coli Shiga-Toxigénica , Aguas Residuales/microbiología , Animales , Bovinos , Perros , Escherichia coli/clasificación , Escherichia coli/genética , Escherichia coli/aislamiento & purificación , Humanos , Macropodidae , Reacción en Cadena de la Polimerasa , Queensland , Escherichia coli Shiga-Toxigénica/clasificación , Escherichia coli Shiga-Toxigénica/genética , Escherichia coli Shiga-Toxigénica/aislamiento & purificación , Microbiología del Agua
16.
Appl Environ Microbiol ; 81(6): 2042-9, 2015 Mar.
Artículo en Inglés | MEDLINE | ID: mdl-25576614

RESUMEN

Pathogenic human viruses cause over half of gastroenteritis cases associated with recreational water use worldwide. They are relatively difficult to concentrate from environmental waters due to typically low concentrations and their small size. Although rapid enumeration of viruses by quantitative PCR (qPCR) has the potential to greatly improve water quality analysis and risk assessment, the upstream steps of capturing and recovering viruses from environmental water sources along with removing PCR inhibitors from extracted nucleic acids remain formidable barriers to routine use. Here, we compared the efficiency of virus recovery for three rapid methods of concentrating two microbial source tracking (MST) viral markers human adenoviruses (HAdVs) and polyomaviruses (HPyVs) from one liter tap water and river water samples on HA membranes (90 mm in diameter). Samples were spiked with raw sewage, and viral adsorption to membranes was promoted by acidification (method A) or addition of MgCl2 (methods B and C). Viral nucleic acid was extracted directly from membranes (method A), or viruses were eluted with NaOH and concentrated by centrifugal ultrafiltration (methods B and C). No inhibition of qPCR was observed for samples processed by method A, but inhibition occurred in river samples processed by B and C. Recovery efficiencies of HAdVs and HPyVs were ∼10-fold greater for method A (31 to 78%) than for methods B and C (2.4 to 12%). Further analysis of membranes from method B revealed that the majority of viruses were not eluted from the membrane, resulting in poor recovery. The modification of the originally published method A to include a larger diameter membrane and a nucleic acid extraction kit that could accommodate the membrane resulted in a rapid virus concentration method with good recovery and lack of inhibitory compounds. The frequently used strategy of viral absorption with added cations (Mg(2+)) and elution with acid were inefficient and more prone to inhibition, and will result in underestimation of the prevalence and concentrations of HAdVs and HPyVs markers in environmental waters.


Asunto(s)
Adenovirus Humanos/aislamiento & purificación , Poliomavirus/aislamiento & purificación , Microbiología del Agua , Biomarcadores/análisis , Humanos
17.
JNMA J Nepal Med Assoc ; 53(199): 162-5, 2015.
Artículo en Inglés | MEDLINE | ID: mdl-27549497

RESUMEN

INTRODUCTION: Carcinoma of penis is an uncommon entity. The higher incidence in developing country may be because of poor hygiene, less common practice of circumcision and unsafe sexual practice. Timely diagnosis and intervention gives the patient a chance of cure. Data on penile cancer is sparse from Nepal so treatment of penile cancer in our centre is presented here. METHODS: This was a retrospective cross-sectional study done at Urology unit of Department of Surgery of Tribhuvan University Teaching Hospital, Nepal from November, 2007 to December, 2013. Data was retrieved from case records and those with penile carcinoma were included. Patient demographics, lesion characteristics, mode of treatment with outcome measures were noted and analyzed. RESULTS: Total 17 patients underwent treatment for primary penile lesion. Mean age of the patients was 51.5 years. Penile growth was the most frequent presentation with five patients coming with more than one symptom. The most common site was over glans of penis (n=13) with the mean size of 3.55 cm. Partial penectomy was offered in 16 with one patient undergoing circumcision only. Inguinal lymph node dissection was done in four patients. Squamous cell carcinoma was the histological diagnosis in 15 patients. CONCLUSIONS: Penile carcinoma is primarily a disease of old. Growth over glans penis is the most common presentation and partial penectomy is feasible in most of the patients to allow oncological cure while preserving the organ for its native function.


Asunto(s)
Carcinoma de Células Escamosas/cirugía , Escisión del Ganglio Linfático , Neoplasias del Pene/cirugía , Procedimientos Quirúrgicos Urológicos Masculinos , Adulto , Anciano , Anciano de 80 o más Años , Carcinoma/patología , Carcinoma/cirugía , Carcinoma de Células Escamosas/patología , Circuncisión Masculina , Estudios Transversales , Femenino , Humanos , Masculino , Persona de Mediana Edad , Nepal , Neoplasias del Pene/patología , Estudios Retrospectivos , Centros de Atención Terciaria
18.
Lett Appl Microbiol ; 59(3): 348-54, 2014 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-24834814

RESUMEN

UNLABELLED: In this study, the relative inactivation of faecal indicator bacteria (FIB) namely Escherichia coli, enterococci and sewage markers [Bacteroides HF183 and human adenoviruses (HAVs)] was assessed in sewage-spiked freshwater and seawater microcosms under ambient subtropical climatic conditions. The numbers of declining FIB were measured with culture-based methods, whereas the numbers of sewage markers were measured with qPCR assays. The T90 inactivation times of E. coli, enterococci and the HF183 markers in both freshwater and seawater microcosms were <3·5 days, suggesting the suitability of the HF183 marker to identify recent sewage pollution events. The T90 value of HAVs (9·4-13 days), however, was significantly higher than FIB and the HF183 marker in both freshwater (P < 0·001) and seawater (P < 0·05) microcosms. Therefore, we recommend that HAVs should be used as an additional marker to adequately assess the potential health risks associated with longer-term sewage-polluted environmental waters. SIGNIFICANCE AND IMPACT OF THE STUDY: In this study, we have shown that the persistence of the Bacteroides HF183 marker in freshwater and seawater microcosms was similar to faecal indicator bacteria (Escherichia coli and enterococci), whereas human adenoviruses (HAVs) persisted relatively longer. These findings suggest the suitability of both the markers to identify sewage pollution in environmental waters. However, HF183 marker appeared to be more useful than HAVs in identifying recent sewage pollution. As, HAVs may remain infective for lengthy periods, it should be used in conjunction with the HF183 marker to obtain information on the potential human health risks associated with sewage-polluted freshwater and seawater.


Asunto(s)
Adenovirus Humanos/genética , Heces/microbiología , Agua Dulce/microbiología , Agua de Mar/microbiología , Aguas del Alcantarillado/microbiología , Microbiología del Agua , Bacteroides/genética , Biomarcadores , ADN Bacteriano/genética , ADN Viral/genética , Enterococcus/genética , Escherichia coli/genética , Humanos , Reacción en Cadena de la Polimerasa , Reacción en Cadena en Tiempo Real de la Polimerasa , Calidad del Agua
19.
Water Res ; 53: 361-9, 2014 Apr 15.
Artículo en Inglés | MEDLINE | ID: mdl-24531256

RESUMEN

In this study, quantitative PCR (qPCR) was used for the detection of four opportunistic bacterial pathogens in water samples collected from 72 rainwater tanks in Southeast Queensland, Australia. Tank water samples were also tested for fecal indicator bacteria (Escherichia coli and Enterococcus spp.) using culture-based methods. Among the 72 tank water samples tested, 74% and 94% samples contained E. coli and Enterococcus spp., respectively, and the numbers of E. coli and Enterococcus spp. in tank water samples ranged from 0.3 to 3.7 log10 colony forming units (CFU) per 100 mL of water. In all, 29%, 15%, 13%, and 6% of tank water samples contained Aeromonas hydrophila, Staphylococcus aureus, Pseudomonas aeruginosa and Legionella pneumophila, respectively. The genomic units (GU) of opportunistic pathogens in tank water samples ranged from 1.5 to 4.6 log10 GU per 100 mL of water. A significant correlation was found between E. coli and Enterococcus spp. numbers in pooled tank water samples data (Spearman's rs = 0.50; P < 0.001). In contrast, fecal indicator bacteria numbers did not correlate with the presence/absence of opportunistic pathogens tested in this study. Based on the results of this study, it would be prudent, to undertake a Quantitative Microbial Risk Assessment (QMRA) analysis of opportunistic pathogens to determine associated health risks for potable and nonpotable uses of tank water.


Asunto(s)
Bacterias/aislamiento & purificación , Monitoreo del Ambiente , Heces/microbiología , Lluvia/microbiología , Reacción en Cadena en Tiempo Real de la Polimerasa , Bacterias/genética , Proteínas Bacterianas/genética , Recuento de Colonia Microbiana , Proyectos Piloto , Queensland
20.
J Nepal Health Res Counc ; 12(26): 59-62, 2014 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-25574987

RESUMEN

BACKGROUND: Hormones, particularly androgens play a vital role in hair growth, differentiation and distribution. Hirsutism is a common entity among Nepalese population with skin types III, IV and V. Long pulsed lasers are commonly used for hair removal. METHODS: This is a prospective analytical study done in Dhulikhel Hospital Kathmandu University Hospital, Kavre, Nepal from November 2010 to November 2011. Patients were first subjected to hormonal evaluation. Androgens, their tropic hormones, insulin resistance markers and endocrine components were measured and compared. Subjects were then categorized into two groups according to androgen levels: group A (n=30) with significantly high androgen (total testosterone and dehydroepiandrosterone sulfate) or elevated luteinizing hormone: follicle stimulating hormone ratio, consistent with Polycystic Ovarian Syndrome (PCOS) and group B (n=30). Adrenal tumour was ruled out in all patients. All patients received long pulse Nd-YAG laser (50J/cm²; 50 msec pulse duration) therapy at four weeks interval to achieve at least 50% hair reduction. RESULTS: Among group A patients, average 8.1 treatment sessions were required for substantial hair reduction, whereas, average 5.7 sessions produced similar results in group B patients (p-value <0.05). CONCLUSIONS: Patients with high androgen level and elevated LH: FSH ratio requires more treatment sessions for hair removal with long pulsed ND-YAG laser than patients with normal or low hormone level.


Asunto(s)
Remoción del Cabello/métodos , Hirsutismo/sangre , Hirsutismo/radioterapia , Láseres de Estado Sólido/uso terapéutico , Adolescente , Adulto , Andrógenos/sangre , Femenino , Gonadotropinas Hipofisarias/sangre , Humanos , Resistencia a la Insulina , Terapia por Luz de Baja Intensidad , Persona de Mediana Edad , Nepal , Estudios Prospectivos , Testosterona/sangre , Adulto Joven
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