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1.
Int J Biol Macromol ; 170: 150-163, 2021 Feb 15.
Artículo en Inglés | MEDLINE | ID: mdl-33359255

RESUMEN

We investigated the tyrosinase-associated melanogenesis in melanoma cells by using OMICS techniques. We characterized the chromosome copy numbers, including Chr 11q21 where the tyrosinase gene is located, from several melanoma cell lines (TXM13, G361, and SK-MEL-28) by using array CGH. We revealed that 11q21 is stable in TXM13 cells, which is directly related to a spontaneous high melanin pigment production. Meanwhile, significant loss of copy number of 11q21 was found in G361 and SK-MEL-28. We further profiled the proteome of TXM13 cells by LC-ESI-MSMS and detected more than 900 proteins, then predicted 11 hub proteins (YWHAZ; HSP90AA1; HSPA5; HSPA1L; HSPA9; HSP90B1; HSPA1A; HSPA8; FKSG30; ACTB; DKFZp686DQ972) by using an interactomic algorithm. YWHAZ (25% interaction in the network) is thought to be a most important protein as a linking factor between tyrosinase-triggered melanogenesis and melanoma growth. Bioinformatic tools were further applied for revealing various physiologic mechanisms and functional classification. The results revealed clues for the spontaneous pigmentation capability of TXM13 cells, contrary to G361 and SK-MEL-28 cells, which commonly have depigmentation properties during subculture. Our study comparatively conducted the genome-wide screening and proteomic profiling integrated interactomics prediction for TXM13 cells and suggests new insights for studying both melanogenesis and melanoma.


Asunto(s)
Hibridación Genómica Comparativa , Biología Computacional/métodos , Melaninas/biosíntesis , Melanoma/metabolismo , Monofenol Monooxigenasa/metabolismo , Proteínas de Neoplasias/metabolismo , Proteómica/métodos , Línea Celular Tumoral , Cromatografía Liquida , Cromosomas Humanos Par 11/genética , Células Clonales , Chaperón BiP del Retículo Endoplásmico , Dosificación de Gen , Ontología de Genes , Humanos , Melanoma/genética , Monofenol Monooxigenasa/genética , Proteínas de Neoplasias/genética , Pigmentación , Mapeo de Interacción de Proteínas , Espectrometría de Masa por Ionización de Electrospray , Espectrometría de Masas en Tándem
2.
Protein Pept Lett ; 28(1): 84-100, 2021.
Artículo en Inglés | MEDLINE | ID: mdl-32586242

RESUMEN

BACKGROUND: Previously, we detected that chloride intracellular channel 1 (CLIC1) was involved in the pathogenesis of atopic dermatitis (AD). OBJECTIVE: In this study, we aimed to use high-throughput screening (HTS) approaches to identify critical factors associated with the function of CLIC1 in knock-down cells. METHODS: We down-regulated CLIC1 in human A549 cells via siRNA and then conducted serial HTS studies, including proteomics integrated with a microarray and the implementation of bioinformatics algorithms. RESULTS: Together, these approaches identified several important proteins and genes associated with the function of CLIC1. These proteins and genes included tumor rejection antigen (gp96) 1, nucleophosmin, annexin I, keratin 1 and 10, FLNA protein, enolase 1, and metalloprotease 1, which were found using two-dimensional electrophoresis (2-DE) proteomics. Separately, NTNG1, SEMA5A, CLEC3A, GRPR, GNGT2, GRM5, GRM7, DNMT3B, CXCR5, CCL11, CD86, IL2, MNDA, TLR5, IL23R, DPP6, DLGAP1, CAT, GSTA1, GSTA2, GSTA5, CYP2E1, ADH1A, ESR1, ARRDC3, A1F1, CCL5, CASP8, DNTT, SQSTM1, PCYT1A, and SLCO4C1 were found using a DNA microarray integrated with PPI mapping. CONCLUSION: CCL11 is thought to be a particularly critical gene among the candidate genes detected in this study. By integrating the datasets and utilizing the strengths of HTS, we obtained new insights into the functional role of CLIC1, including the use of CLIC1-associated applications in the treatment of human diseases such as AD.


Asunto(s)
Canales de Cloruro/metabolismo , Dermatitis Atópica/metabolismo , Regulación de la Expresión Génica , Análisis por Matrices de Proteínas , Proteómica , Células A549 , Canales de Cloruro/genética , Dermatitis Atópica/genética , Dermatitis Atópica/patología , Técnicas de Silenciamiento del Gen , Humanos
3.
J Biomol Struct Dyn ; 38(10): 2884-2897, 2020 Jul.
Artículo en Inglés | MEDLINE | ID: mdl-31345118

RESUMEN

In this study, we aimed to identify critical factors associated with superoxide dismutase 2 (SOD2) in human keratinocytes through gene and protein expression profiling approaches. After recombinant SOD2 was exogenously added to culture media, we conducted serial OMICS studies, which included RNA sequencing analysis, integrated antibody-chip arrays, and the implementation of bioinformatics algorithms, in order to reveal genes and proteins that are possibly associated with SOD2 in keratinocytes. These approaches identified several novel genes and proteins in keratinocytes that are associated with exogenous SOD2. These novel genes included DCT, which was up-regulated, and CD38, GPR151, HCK, KIT, and AFP, which were down-regulated. Among them, CD38 and KIT were also predicted as hub proteins in PPI mappings. By integrating the datasets obtained from these complementary high-throughput OMICS studies and utilizing the strengths of each method, we obtained new insights into the functional role of externally added SOD2 in skin cells and into several critical genes that are thought to play important roles in SOD2-associated skin function. The approach used here could help contribute to our clinical understanding of SOD2-associated applications and may be broadly applicable to a wider range of diseases. AbbreviationsSOD2superoxide dismutase 2DAVIDthe database for annotation, visualization and integrated discoveryKEGGKyoto Encyclopedia of Genes and GenomesPPIprotein-protein interactionsHTSHigh-throughput screeningCommunicated by Ramaswamy H. Sarma.


Asunto(s)
Biología Computacional , Superóxido Dismutasa , Humanos , Queratinocitos , Análisis de Secuencia de ARN , Superóxido Dismutasa/genética
4.
J Biomol Struct Dyn ; 38(12): 3496-3503, 2020 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-31448679

RESUMEN

The inhibition of α-glucosidase is used as a key clinical approach to treat type 2 diabetes mellitus and thus, we assessed the inhibitory effect of α-ketoglutaric acid (AKG) on α-glucosidase with both an enzyme kinetic assay and computational simulations. AKG bound to the active site and interacted with several key residues, including ASP68, PHE157, PHE177, PHE311, ARG312, TYR313, ASN412, ILE434 and ARG439, as detected by protein-ligand docking and molecular dynamics simulations. Subsequently, we confirmed the action of AKG on α-glucosidase as mixed-type inhibition with reversible and rapid binding. The relevant kinetic parameter IC50 was measured (IC50 = 1.738 ± 0.041 mM), and the dissociation constant was determined (Ki Slope = 0.46 ± 0.04 mM). Regarding the relationship between structure and activity, a high AKG concentration induced the slight modulation of the shape of the active site, as monitored by hydrophobic exposure. This tertiary conformational change was linked to AKG inhibition and mostly involved regional changes in the active site. Our study provides insight into the functional role of AKG due to its structural property of a hydroxyphenyl ring that interacts with the active site. We suggest that similar hydroxyphenyl ring-containing compounds targeting key residues in the active site might be potential α-glucosidase inhibitors. AbbreviationsAKGalpha-ketoglutaric acidpNPG4-nitrophenyl-α-d-glucopyranosideANS1-anilinonaphthalene-8-sulfonateMDmolecular dynamics.Communicated by Ramaswamy H. Sarma.


Asunto(s)
Inhibidores de Glicósido Hidrolasas/farmacología , Ácidos Cetoglutáricos/farmacología , alfa-Glucosidasas , Diabetes Mellitus Tipo 2 , Humanos , Cinética , Simulación del Acoplamiento Molecular , Simulación de Dinámica Molecular , alfa-Glucosidasas/metabolismo
5.
J Biomol Struct Dyn ; 38(9): 2633-2649, 2020 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-31244373

RESUMEN

Previously, we detected that 14-3-3 protein epsilon (YWHAE) was involved in the pathogenesis of atopic dermatitis (AD) and tyrosinase-mediated pigmentation. In this study, we aimed to identify critical factors associated with YWHAE in human keratinocytes using high-throughput screening (HTS) approaches to reveal its functions in skin. We overexpressed YWHAE in human HaCaT keratinocytes and then conducted serial HTS studies, including RNA sequencing integrated with antibody arrays and the implementation of bioinformatics algorithms. Cumulatively, these approaches identified several novel genes in keratinocytes associated with the function of YWHAE including KRT9, KRT1, KRT6C, BST2, CIB2, APH1B, ACTC1, IFI27, TUBA1A, CAPN6, UTY, MX2, and MAPK15, based on RNA sequencing data, and MAPK1, MMP2, TYK2, NOS3, and CASP3, based on antibody array data. In particular, CD37 is a unique gene that was detected and validated in all the methods applied in this study. By integrating the datasets obtained from these HTS studies and utilizing the strengths of each method, we obtained new insights into the functional role of YWHAE in skin keratinocytes. The approach used here could contribute to the clinical understanding of YWHAE-associated applications in the treatment of AD disease. AbbreviationsDAVIDthe database for annotation, visualization and integrated discoveryHTSHigh-throughput screeningKEGGKyoto Encyclopedia of Genes and GenomesPPIprotein-protein interactionsCommunicated by Ramaswamy H. Sarma.


Asunto(s)
Proteínas 14-3-3/metabolismo , Dermatitis Atópica , Queratinocitos , Proteínas 14-3-3/genética , Biología Computacional , Dermatitis Atópica/genética , Quinasas MAP Reguladas por Señal Extracelular , Células HaCaT , Humanos , Análisis de Secuencia de ARN
6.
Exp Mol Med ; 51(7): 1-11, 2019 07 17.
Artículo en Inglés | MEDLINE | ID: mdl-31316050

RESUMEN

Chloride intracellular channel 1 (CLIC1) is a promising therapeutic target in cancer due to its intrinsic characteristics; it is overexpressed in specific tumor types and its localization changes from cytosolic to surface membrane depending on activities and cell cycle progression. Ca2+ and reactive oxygen species (ROS) are critical signaling molecules that modulate diverse cellular functions, including cell death. In this study, we investigated the function of CLIC1 in Ca2+ and ROS signaling in A549 human lung cancer cells. Depletion of CLIC1 via shRNAs in A549 cells increased DNA double-strand breaks both under control conditions and under treatment with the putative anticancer agent chelerythrine, accompanied by a concomitant increase in the p-JNK level. CLIC1 knockdown greatly increased basal ROS levels, an effect prevented by BAPTA-AM, an intracellular calcium chelator. Intracellular Ca2+ measurements clearly showed that CLIC1 knockdown significantly increased chelerythrine-induced Ca2+ signaling as well as the basal Ca2+ level in A549 cells compared to these levels in control cells. Suppression of extracellular Ca2+ restored the basal Ca2+ level in CLIC1-knockdown A549 cells relative to that in control cells, implying that CLIC1 regulates [Ca2+]i through Ca2+ entry across the plasma membrane. Consistent with this finding, the L-type Ca2+ channel (LTCC) blocker nifedipine reduced the basal Ca2+ level in CLIC1 knockdown cells to that in control cells. Taken together, our results demonstrate that CLIC1 knockdown induces an increase in the intracellular Ca2+ level via LTCC, which then triggers excessive ROS production and consequent JNK activation. Thus, CLIC1 is a key regulator of Ca2+ signaling in the control of cancer cell survival.


Asunto(s)
Señalización del Calcio/efectos de los fármacos , Calcio/metabolismo , Canales de Cloruro/antagonistas & inhibidores , Neoplasias Pulmonares/tratamiento farmacológico , Especies Reactivas de Oxígeno/antagonistas & inhibidores , Células A549 , Muerte Celular , Membrana Celular/metabolismo , Canales de Cloruro/metabolismo , Roturas del ADN de Doble Cadena , Técnicas de Silenciamiento del Gen , Humanos , Neoplasias Pulmonares/metabolismo , ARN Interferente Pequeño/genética , Especies Reactivas de Oxígeno/metabolismo
7.
Cell Physiol Biochem ; 53(1): 157-171, 2019.
Artículo en Inglés | MEDLINE | ID: mdl-31251006

RESUMEN

BACKGROUND/AIMS: Dysregulation of deubiquitinating enzymes (DUBs), which regulate the stability of key proteins, has been implicated in many human diseases, including cancers. Thus, DUBs can be considered as potential therapeutic targets for many diseases. Among them, USP4 has been proposed as a promising target for colon cancer drugs since USP4 controls the stability of ß-catenin, a key factor in the Wnt signaling involved in the tumorigenesis of colorectal cancer. However, developing potential DUB inhibitors has been hindered because many DUBs harbor similar active site structures and show broad substrate specificities. METHODS: By performing in vitro deubiquitinating activity assays using a chemical library, we identified several potential DUB inhibitors. Among them, only neutral red (NR) showed selective inhibitory activity on USP4 in a cell-based assay system. In colon cancer cells, NR affected the protein stability of ß-catenin, as shown by immunoblotting, and it affected the target gene expression of ß-catenin, as shown by quantitative real-time PCR. NR's potential as an anticancer drug was further estimated by colony formation and cell migration assays and by using a mouse xenograft model. RESULTS: We identified NR as an uncompetitive inhibitor of USP4 and validated its effects in colorectal cancer. NR-treated cells showed decreased ß-catenin stability and reduced expression of ß-catenin target genes. Additionally, treating colon cancer cells with NR significantly reduced colony formation and cell migration, and injecting NR into a mouse xenograft model reduced the tumor volume. CONCLUSION: The current results suggest that NR could be developed as an anticancer drug targeting USP4, and they support the possibility of developing specific DUB inhibitors as therapeutic agents.


Asunto(s)
Rojo Neutro/farmacología , Proteasas Ubiquitina-Específicas/antagonistas & inhibidores , Vía de Señalización Wnt/efectos de los fármacos , beta Catenina/metabolismo , Animales , Línea Celular Tumoral , Movimiento Celular/efectos de los fármacos , Proliferación Celular/efectos de los fármacos , Neoplasias Colorrectales/tratamiento farmacológico , Neoplasias Colorrectales/metabolismo , Neoplasias Colorrectales/patología , Ciclina D1/genética , Ciclina D1/metabolismo , Progresión de la Enfermedad , Humanos , Ratones , Ratones Endogámicos BALB C , Ratones Desnudos , Rojo Neutro/química , Rojo Neutro/uso terapéutico , Trasplante Heterólogo , Proteasas Ubiquitina-Específicas/metabolismo
8.
Int J Biol Macromol ; 133: 391-411, 2019 Jul 15.
Artículo en Inglés | MEDLINE | ID: mdl-30974145

RESUMEN

Previously, we have identified the C3dg protein as an important player in the pathogenesis of atopic dermatitis (AD). In this study, we aimed to identify critical factors associated with C3dg in human keratinocytes based on high-throughput screening (HTS) approaches. We overexpressed C3dg in HaCaT human keratinocytes and conducted serial HTS studies, including RNA sequencing analysis integrated with antibody-chip arrays and implementation of bioinformatics algorithms (PPI mappings). Cumulatively, these approaches identified several novel C3dg-associated genes and proteins that are thought to be significantly involved in skin diseases including AD. These novel genes and proteins included LPA, PROZ, BLK, CLDN11, and FGF22, which are believed to play important roles in C3dg-associated skin functions in keratinocytes, as well as genes related to the two important pathways of systemic lupus erythematosus and Staphylococcus aureus infection. In particular, FGF22 is a unique gene that was detected and validated in all methods applied in this study. By integrating the datasets obtained from these HTS studies and utilizing the strengths of each method, we obtained new insights into the functional role of C3dg in keratinocytes. The approach used here contributes to clinical understanding of C3dg-associated applications and may also be applicable to treatment of AD.


Asunto(s)
Anticuerpos/metabolismo , Complemento C3b/genética , Complemento C3b/metabolismo , Biología Computacional , Queratinocitos/metabolismo , Fragmentos de Péptidos/genética , Fragmentos de Péptidos/metabolismo , Análisis por Matrices de Proteínas , Análisis de Secuencia de ARN , Algoritmos , Células Hep G2 , Humanos
9.
Biochem Biophys Res Commun ; 496(2): 778-783, 2018 02 05.
Artículo en Inglés | MEDLINE | ID: mdl-29217193

RESUMEN

Epithelial-stromal interaction 1 (EPSTI1) was first discovered as a gene induced in breast cancer epithelial cells by co-cultured stromal fibroblasts. There are many reports on the role of Epsti1 in cancer malignancy. Epsti1 is now well known in regulating cancer. Recently, the role of Epsti1 in the immune response has been reported; these reports suggest the role of Epsti1 in immune function, immune privilege, and autoimmune diseases. Furthermore, they show that Epsti1 is expressed in various types of immune cells. In this study, we observed that Epsti1 is highly expressed in macrophages exposed to IFNγ and lipopolysaccharide (LPS), which classically activates macrophages. Polarization of macrophage to classically activated (M1) or alternatively activated (M2) is important for mounting responses against various infections. The M1 and M2 types of macrophage have a distinct role in the immune system. However, the molecular mechanism of modulation of the macrophage type is not well defined. Our results showed that the M2 type macrophage phenotype is enhanced in Epsti1-deficient bone marrow-derived macrophages (BMDM). In addition, Epsti1 deficiency suppresses induction of pro-inflammatory genes in BMDMs via inhibition of Stat1 and p65 nuclear localization and phosphorylation. Surprisingly, Epsti1-/- mice show decreased numbers of M1 macrophages in the peritoneal cavity. These findings identify Epsti1 as a modulator of macrophage activation and polarization via the Stat1 and p65 pathways, and suggest a potentially important role of Epsti1 in immunotherapies against inflammatory diseases.


Asunto(s)
Activación de Macrófagos , Macrófagos/inmunología , Proteínas de Neoplasias/metabolismo , Animales , Polaridad Celular , Regulación de la Expresión Génica , Técnicas de Silenciamiento del Gen , Inflamación/genética , Inflamación/inmunología , Interferón gamma/inmunología , Lipopolisacáridos/inmunología , Macrófagos/metabolismo , Ratones , Células RAW 264.7
10.
Diagn Microbiol Infect Dis ; 89(2): 106-111, 2017 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-28821364

RESUMEN

We evaluated serologic response of 42 Middle East respiratory syndrome coronavirus (MERS-CoV)-infected patients according to 4 severity groups: asymptomatic infection (Group 0), symptomatic infection without pneumonia (Group 1), pneumonia without respiratory failure (Group 2), and pneumonia progressing to respiratory failure (Group 3). None of the Group 0 patients showed seroconversion, while the seroconversion rate gradually increased with increasing disease severity (0.0%, 60.0%, 93.8%, and 100% in Group 0, 1, 2, 3, respectively; P = 0.001). Group 3 patients showed delayed increment of antibody titers during the fourth week, while Group 2 patients showed robust increment of antibody titer during the third week. Among patients having pneumonia, 75% of deceased patients did not show seroconversion by the third week, while 100% of the survived patients were seroconverted (P = 0.003).


Asunto(s)
Anticuerpos Antivirales/sangre , Infecciones por Coronavirus/inmunología , Inmunoglobulina A/sangre , Inmunoglobulina G/sangre , Inmunoglobulina M/sangre , Coronavirus del Síndrome Respiratorio de Oriente Medio/inmunología , Neumonía/sangre , Infecciones por Coronavirus/sangre , Infecciones por Coronavirus/virología , Humanos , Inmunoglobulina A/inmunología , Inmunoglobulina G/inmunología , Inmunoglobulina M/inmunología , Neumonía/diagnóstico , Neumonía/virología , Estudios Retrospectivos , Reacción en Cadena de la Polimerasa de Transcriptasa Inversa , Seroconversión
11.
Infect Control Hosp Epidemiol ; 38(2): 234-238, 2017 02.
Artículo en Inglés | MEDLINE | ID: mdl-27841103

RESUMEN

To evaluate the appropriateness of the screening strategy for healthcare personnel (HCP) during a hospital-associated Middle East Respiratory Syndrome (MERS) outbreak, we performed a serologic investigation in 189 rRT-PCR-negative HCP exposed and assigned to MERS patients. Although 20%-25% of HCP experienced MERS-like symptoms, none of them showed seroconversion by plaque reduction neutralization test (PRNT). Infect Control Hosp Epidemiol 2017;38:234-238.


Asunto(s)
Infecciones por Coronavirus/epidemiología , Infección Hospitalaria/epidemiología , Personal de Salud/estadística & datos numéricos , Coronavirus del Síndrome Respiratorio de Oriente Medio/aislamiento & purificación , Adulto , Infecciones por Coronavirus/diagnóstico , Brotes de Enfermedades , Femenino , Humanos , Modelos Lineales , Masculino , Tamizaje Masivo/métodos , Persona de Mediana Edad , República de Corea/epidemiología , Adulto Joven
12.
Cell Death Dis ; 7(10): e2431, 2016 10 20.
Artículo en Inglés | MEDLINE | ID: mdl-27763641

RESUMEN

Skeletal myogenesis is coordinated by multiple signaling pathways that control cell adhesion/migration, survival and differentiation accompanied by muscle-specific gene expression. A cell surface protein Cdo is involved in cell contact-mediated promyogenic signals through activation of p38MAPK and AKT. Protein kinase C-related kinase 2 (PKN2/PRK2) is implicated in regulation of various biological processes, including cell migration, adhesion and death. It has been shown to interact with and inhibit AKT thereby inducing cell death. This led us to investigate the role of PKN2 in skeletal myogenesis and the crosstalk between PKN2 and Cdo. Like Cdo, PKN2 was upregulated in C2C12 myoblasts during differentiation and decreased in cells with Cdo depletion caused by shRNA or cultured on integrin-independent substratum. This decline of PKN2 levels resulted in diminished AKT activation during myoblast differentiation. Consistently, PKN2 overexpression-enhanced C2C12 myoblast differentiation, whereas PKN2-depletion impaired it, without affecting cell survival. PKN2 formed complexes with Cdo, APPL1 and AKT via its C-terminal region and this interaction appeared to be important for induction of AKT activity as well as myoblast differentiation. Furthermore, PKN2-enhanced MyoD-responsive reporter activities by mediating the recruitment of BAF60c and MyoD to the myogenin promoter. Taken together, PKN2 has a critical role in cell adhesion-mediated AKT activation during myoblast differentiation.


Asunto(s)
Moléculas de Adhesión Celular/metabolismo , Diferenciación Celular , Mioblastos/citología , Mioblastos/metabolismo , Proteína Quinasa C/metabolismo , Proteínas Proto-Oncogénicas c-akt/metabolismo , Proteínas Adaptadoras Transductoras de Señales/metabolismo , Animales , Línea Celular , Activación Enzimática , Genes Reporteros , Ratones , Proteína MioD/metabolismo , Unión Proteica , Proteína Quinasa C/química , Técnicas del Sistema de Dos Híbridos , Regulación hacia Arriba
13.
Mol Oncol ; 9(9): 1834-51, 2015 Nov.
Artículo en Inglés | MEDLINE | ID: mdl-26189775

RESUMEN

ß-catenin is a key signal transducer in the canonical WNT pathway and is negatively regulated by ubiquitin-dependent proteolysis. Through screening of various deubiquitinating enzymes (DUBs), we identified ubiquitin specific protease 4 (USP4) as a candidate for ß-catenin-specific DUB. The effects of USP4 overexpression or knockdown suggested that USP4 positively controls the stability of ß-catenin and enhances ß-catenin-regulated transcription. Domain mapping results revealed that the C-terminal catalytic domain is responsible for ß-catenin binding and nuclear transport. Examination of colon cancer tissues from patients revealed a correlation between elevated expression levels of USP4 and ß-catenin. Consistent with this correlation, USP4 knockdown in HCT116, a colon cancer cell line, reduced invasion and migration activity. These observations indicate that USP4 acts as a positive regulator of the WNT/ß-catenin pathway by deubiquitination and facilitates nuclear localization of ß-catenin. Therefore, we propose that USP4 is a potential target for anti-cancer therapeutics.


Asunto(s)
Colon/patología , Neoplasias Colorrectales/metabolismo , Neoplasias Colorrectales/patología , Recto/patología , Ubiquitina Tiolesterasa/metabolismo , Vía de Señalización Wnt , Movimiento Celular , Colon/metabolismo , Neoplasias Colorrectales/genética , Células HCT116 , Humanos , Invasividad Neoplásica/genética , Invasividad Neoplásica/patología , Interferencia de ARN , ARN Interferente Pequeño/genética , Recto/metabolismo , Ubiquitina Tiolesterasa/análisis , Ubiquitina Tiolesterasa/genética , Proteasas Ubiquitina-Específicas , Ubiquitinación , Proteínas Wnt/metabolismo , beta Catenina/metabolismo
14.
Acta Crystallogr D Biol Crystallogr ; 70(Pt 3): 615-26, 2014 Mar.
Artículo en Inglés | MEDLINE | ID: mdl-24598731

RESUMEN

Bacterial pathogens have evolved diverse types of efficient machinery to acquire haem, the most abundant source of iron in the human body, and degrade it for the utilization of iron. Gram-positive bacteria commonly encode IsdG-family proteins as haem-degrading monooxygenases. Listeria monocytogenes is predicted to possess an IsdG-type protein (Lmo2213), but the residues involved in haem monooxygenase activity are not well conserved and there is an extra N-terminal domain in Lmo2213. Therefore, its function and mechanism of action cannot be predicted. In this study, the crystal structure of Lmo2213 was determined at 1.75 Šresolution and its haem-binding and haem-degradation activities were confirmed. Structure-based mutational and functional assays of this protein, designated as an Isd-type L. monocytogenes haem-degrading enzyme (Isd-LmHde), identified that Glu71, Tyr87 and Trp129 play important roles in haem degradation and that the N-terminal domain is also critical for its haem-degrading activity. The haem-degradation product of Isd-LmHde is verified to be biliverdin, which is also known to be the degradation product of other bacterial haem oxygenases. This study, the first structural and functional report of the haem-degradation system in L. monocytogenes, sheds light on the concealed haem-utilization system in this life-threatening human pathogen.


Asunto(s)
Proteínas de la Membrana Bacteriana Externa/química , Proteínas de la Membrana Bacteriana Externa/fisiología , Hemo/metabolismo , Listeria monocytogenes/enzimología , Oxigenasas/química , Oxigenasas/fisiología , Secuencia de Aminoácidos , Proteínas de la Membrana Bacteriana Externa/genética , Biliverdina/química , Biliverdina/metabolismo , Catálisis , Cristalografía por Rayos X , Hemo/química , Humanos , Listeria monocytogenes/genética , Listeria monocytogenes/patogenicidad , Datos de Secuencia Molecular , Mutagénesis Sitio-Dirigida , Oxigenasas/genética
15.
Biochem Biophys Res Commun ; 415(1): 206-11, 2011 Nov 11.
Artículo en Inglés | MEDLINE | ID: mdl-22037462

RESUMEN

The EGFR-mediated signaling pathway regulates multiple biological processes such as cell proliferation, survival and differentiation. Previously APPL1 (adaptor protein containing PH domain, PTB domain and leucine zipper 1) has been reported to function as a downstream effector of EGF-initiated signaling. Here we demonstrate that APPL1 regulates EGFR protein levels in response to EGF stimulation. Overexpression of APPL1 enhances EGFR stabilization while APPL1 depletion by siRNA reduces EGFR protein levels. APPL1 depletion accelerates EGFR internalization and movement of EGF/EGFR from cell surface to the perinuclear region in response to EGF treatment. Conversely, overexpression of APPL1 decelerates EGFR internalization and translocation of EGF/EGFR to the perinuclear region. Furthermore, APPL1 depletion enhances the activity of Rab5 which is involved in internalization and trafficking of EGFR and inhibition of Rab5 in APPL1-depleted cells restored EGFR levels. Consistently, APPL1 depletion reduced activation of Akt, the downstream signaling effector of EGFR and this is restored by inhibition of Rab5. These findings suggest that APPL1 is required for EGFR signaling by regulation of EGFR stabilities through inhibition of Rab5.


Asunto(s)
Proteínas Adaptadoras Transductoras de Señales/metabolismo , Receptores ErbB/metabolismo , Proteínas Adaptadoras Transductoras de Señales/genética , Células HeLa , Humanos , Transporte de Proteínas , ARN Interferente Pequeño/genética , Proteínas de Unión al GTP rab5/antagonistas & inhibidores , Proteínas de Unión al GTP rab5/metabolismo
16.
J Mol Biol ; 414(2): 231-42, 2011 Nov 25.
Artículo en Inglés | MEDLINE | ID: mdl-21996443

RESUMEN

Endorepellin, the C-terminal region of perlecan, inhibits angiogenesis by disrupting actin cytoskeleton and focal adhesions. The C-terminal laminin-like globular domain (LG3) of endorepellin directs most of this antiangiogenic activity. To investigate the angiostatic mechanism and to identify structural determinants, we have solved crystal structures of the LG3 domain in both apo- and calcium-bound forms at resolutions of 1.5 Å and 2.8 Å, respectively. The conserved core has the jellyroll fold characteristic of LG domains. The calcium-induced structural changes seem very restricted, and the calcium binding site appears to be preformed, suggesting that the bound calcium ion, rather than structural rearrangements, contributes to antiangiogenesis. We have identified H4268 on the EF loop as a key residue for the biochemical function of LG3, since its mutation abolishes antiangiogenic activity, and mutant LG3 can no longer form a direct interaction with integrin. Taken together, we propose that these two distinct structural elements contribute to the angiostatic effect of endorepellin.


Asunto(s)
Inhibidores de la Angiogénesis/química , Proteoglicanos de Heparán Sulfato/química , Fragmentos de Péptidos/química , Secuencia de Aminoácidos , Inhibidores de la Angiogénesis/metabolismo , Inhibidores de la Angiogénesis/farmacología , Sitios de Unión , Calcio/metabolismo , Cristalografía por Rayos X , Proteoglicanos de Heparán Sulfato/metabolismo , Proteoglicanos de Heparán Sulfato/farmacología , Humanos , Modelos Moleculares , Datos de Secuencia Molecular , Fragmentos de Péptidos/metabolismo , Fragmentos de Péptidos/farmacología , Homología de Secuencia de Aminoácido
17.
Mol Biol Cell ; 21(14): 2399-411, 2010 Jul 15.
Artículo en Inglés | MEDLINE | ID: mdl-20484574

RESUMEN

Cell-cell interactions between muscle precursors are required for myogenic differentiation; however, underlying mechanisms are largely unknown. Promyogenic cell surface protein Cdo functions as a component of multiprotein complexes containing other cell adhesion molecules, Boc, Neogenin and N-cadherin, and mediates some of signals triggered by cell-cell interactions between muscle precursors. Cdo activates p38MAPK via interaction with two scaffold proteins JLP and Bnip-2 to promote myogenesis. p38MAPK and Akt signaling are required for myogenic differentiation and activation of both signaling pathways is crucial for efficient myogenic differentiation. We report here that APPL1, an interacting partner of Akt, forms complexes with Cdo and Boc in differentiating myoblasts. Both Cdo and APPL1 are required for efficient Akt activation during myoblast differentiation. The defective differentiation of Cdo-depleted cells is fully rescued by overexpression of a constitutively active form of Akt, whereas overexpression of APPL1 fails to do so. Taken together, Cdo activates Akt through association with APPL1 during myoblast differentiation, and this complex likely mediates some of the promyogenic effect of cell-cell interaction. The promyogenic function of Cdo involves a coordinated activation of p38MAPK and Akt via association with scaffold proteins, JLP and Bnip-2 for p38MAPK and APPL1 for Akt.


Asunto(s)
Proteínas Adaptadoras Transductoras de Señales/metabolismo , Moléculas de Adhesión Celular/metabolismo , Diferenciación Celular , Mioblastos/citología , Mioblastos/enzimología , Proteínas Proto-Oncogénicas c-akt/metabolismo , Aminoácidos/metabolismo , Animales , Cadherinas/metabolismo , Moléculas de Adhesión Celular/deficiencia , Línea Celular , Activación Enzimática , Humanos , Proteínas de la Membrana/metabolismo , Ratones , Desarrollo de Músculos , Unión Proteica
18.
J Biomol Struct Dyn ; 27(3): 331-46, 2009 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-19795916

RESUMEN

The overexpression of a single tyrosinase gene can induce conspicuous pigmentation in nonpigmented cells. We hypothesized that some unknown tyrosinase-associated genes are simultaneously regulated by melanin synthesis. To improve understanding of melanogenesis and tyrosinase-associated functions, we attempted to profile the genes that are altered during melanin production in HEK293 cells by using a functional DNA chip microarray. The candidate genes were obtained based on significance analysis of microarray (SAM) and further computational prediction via protein-protein interaction (PPI) mapping suggested that newly detected hub genes were involved in melanogenesis. PPI mapping using bioinformatic tools revealed 8 genes that formed an interaction hub. The yeast two-hybridization results suggested some candidate genes could interact with tyrosinase. The present study provides information to further understand the complex factors associated with tyrosinase-induced melanogenesis and apoptosis. The approach of combining expression data analysis and predicted protein interaction partners can help identify genes involved in pigmentation.


Asunto(s)
Perfilación de la Expresión Génica/métodos , Regulación Neoplásica de la Expresión Génica , Melaninas/metabolismo , Monofenol Monooxigenasa/genética , Humanos , Microscopía Inmunoelectrónica , Monofenol Monooxigenasa/metabolismo , Análisis de Secuencia por Matrices de Oligonucleótidos , ARN Mensajero/metabolismo , Pigmentación de la Piel/genética
19.
J Mol Biol ; 376(1): 184-92, 2008 Feb 08.
Artículo en Inglés | MEDLINE | ID: mdl-18155725

RESUMEN

Guamerin, a canonical serine protease inhibitor from Hirudo nipponia, was identified as an elastase-specific inhibitor and has potential application in various diseases caused by elevated elastase concentration. However, the application of guamerin is limited because it also shows inhibitory activity against other proteases. To improve the selectivity of guamerin as an elastase inhibitor, it is essential to understand the binding mode of the inhibitor to elastase and to other proteases. For this purpose, we determined the crystal structure of guamerin in complex with chymotrypsin at 2.5 A resolution. The binding mode of guamerin on elastase was explored from the model structure of guamerin/elastase. Guamerin binds to the hydrophobic pocket of the protease in a substrate-like manner using its binding loop. In order to improve the binding selectivity of guamerin to elastase, several residues in the binding loop were mutated and the inhibitory activities of the mutants against elastase and chymotrypsin were monitored. The substitution of the Met36 residue for Ala in the P1 site increased the inhibitory activity against elastase up to 14-fold, while the same mutant showed 7-fold decreased activity against chymotrypsin compared to the wild-type guamerin. Furthermore, the M36A guamerin mutant more effectively protected endothelial cells against cell damage caused by elastase than the wild-type guamerin.


Asunto(s)
Quimotripsina/química , Inhibidores Enzimáticos/farmacología , Hormonas de Invertebrados/química , Hormonas de Invertebrados/farmacología , Secuencia de Aminoácidos , Sustitución de Aminoácidos/genética , Línea Celular , Quimotripsina/metabolismo , Cristalografía por Rayos X , Células Endoteliales/efectos de los fármacos , Humanos , Hormonas de Invertebrados/genética , Modelos Moleculares , Datos de Secuencia Molecular , Mutagénesis Sitio-Dirigida , Proteínas Mutantes/farmacología , Elastasa Pancreática/antagonistas & inhibidores , Elastasa Pancreática/metabolismo , Alineación de Secuencia , Especificidad por Sustrato
20.
Exp Mol Med ; 39(4): 450-7, 2007 Aug 31.
Artículo en Inglés | MEDLINE | ID: mdl-17934332

RESUMEN

Zinc finger protein 133 (ZNF133) is composed of a Krüppel-associated box (KRAB) domain and 14 contiguous zinc finger motifs. ZNF133 is regarded as a transcriptional repressor because the KRAB domain has potent repressor activity and the zinc finger motifs usually act in binding to DNA. However, we found that the zinc finger motifs of ZNF133 also possessed transcriptional repressor activity. By two-hybrid screening assay, we found that the zinc finger motifs of ZNF133 interacted with protein inhibitor of activated STAT1 (PIAS1). PIAS1 enhanced the transcriptional repression activity of ZNF133 through the zinc finger motifs. This effect of PIAS1 was relieved by an inhibitor of the histone deacetylases (HDACs). These results demonstrate that the transcriptional repressor activity of ZNF133 is regulated by both the KRAB domain and the zinc finger motifs, and that the repressive effect by zinc finger motifs is mediated by PIAS1.


Asunto(s)
Proteínas de Unión al ADN/metabolismo , Proteínas Inhibidoras de STAT Activados/metabolismo , Proteínas Represoras/metabolismo , Proteínas Modificadoras Pequeñas Relacionadas con Ubiquitina/metabolismo , Línea Celular , Inhibidores de Histona Desacetilasas , Histona Desacetilasas/metabolismo , Humanos , Unión Proteica , Estructura Terciaria de Proteína , Transcripción Genética , Técnicas del Sistema de Dos Híbridos , Dedos de Zinc
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