The Brazilian Atlantic Bushmaster Lachesis (Linnaeus, 1766) Mitogenome With Insights On Snake Evolution And Divergence (Serpentes: Viperidae: Crotalinae).

This study presents the first complete mitogenome of the Brazilian Atlantic bushmaster Lachesis with insights into snake evolution. The total length was 17,177 bp, consisting of 13 PCGs, 22 tRNAs, two rRNAs and a duplicate control region (CRs). Almost all genes were encoded by the heavy-strand, except for the ND6 gene and eight tRNAs (tRNA-Gln, Ala, Asn, Cys, Tyr, Ser[TGA anticodon], Glu, Pro). Only ATG, ATA, and ATC were starting codons for protein-coding sequences. Stop codons mainly were TAA, AGA, AGG, and TAG; whereas ND1, ND3, and CYTB terminated with incomplete stop codons. Phylogeny retrieved Lachesis within the Crotalinae as the sister group of Agkistrodon; and the Lachesis+Agkistrodon clade as the sister group of (Sistrurus+Crotalus)+Bothrops. The tree supports Crotalinae, Viperinae, and Azemiopinae in the Viperidae family, being sister taxa of Colubridae+(Elapidae+Psammophiidae). The mean genetic distance across 15 snake families and 57 nucleotide sequences was 0.37. The overall mean value of genetic distance across the Crotalinae was 0.23, with Lachesis muta exhibiting the shortest distance of 0.2 with Agkistrodon piscivorus, Protobothrops dabieshanensis and P. flavoviridis and the greatest 0.25 with Gloydius blomhoffii, Trimeresurus albolabris, S. miliarius, and Deinagkistrodon acutus. The complete Atlantic L. muta mitogenome presented herein is only the third annotated mitogenome from more than 430 described Brazilian snake species.

Evolutionary analysis of Chironius snakes unveils cryptic diversity and provides clues to diversification in the Neotropics.

Recent hypotheses to explain tropical diversity involves the Neogene and Quaternary geoclimatic dynamics, but the absence of unambiguous data permitting the choice between alternative hypotheses makes a general theory for the origin of tropical biodiversity far to be achieved. The occurrence of Chironius snakes in well-defined biogeographical regions led us to adopt Chironius as a model to unveil patterns of vertebrate diversification in the Neotropics. Here, we used molecular markers and records on geographic distribution to investigate Chironius evolution and, subsequently, providing hints on diversification in the Neotropics. To avoid analyzing nominal species that do not constitute exclusive evolutionary lineages, we firstly conducted a species delimitation study prior to carrying out the species distribution modeling analysis. We generated 161 sequences of 12S, 16S, c-mos and rag2 for 15 species and 50 specimens, and included additional data from GenBank yielding a matrix of 137 terminals, and performed the following evolutionary analyses: inference of a concatenated gene tree, estimation of gene divergence times, inference of the coalescent-based phylogeny of Chironius, estimation of effective population sizes and modeling potential distribution of species across the last millennia. We tested for species boundaries within Chironius by implementing a coalescent-based Bayesian species delimitation approach. Our analyses supported the monophyly of Chironius, although our findings underscored cryptic candidate species in C. flavolineatus and C. exoletus. The inferred timetree suggested that Chironius snakes have evolved in the early Miocene (ca. 20.2Mya) and began to diversify from the late Miocene to the early Pliocene, values that are much older than previously reported. Following genetic divergence of virtually all extant Chironius species investigated, the effective sizes of the populations have expanded when compared to their MRCAs. The evolutionary and SDM data from C. brazili and C. diamantina provided additional evidence of the origin of species in the Neotropics. We argue that temperature, instead of altitude, has been the major driving factor in the evolution of both species, and thus we present a case for the consequences of global warming.

Snake richness in urban forest fragments from Niterói and surroundings, state of Rio de Janeiro, southeastern Brazil.

BACKGROUND: The Atlantic Forest is a hotspot for biodiversity, an area which houses high species richness and endemism, but with high level of threat. With reference to the herpetofauna, until recently there has been no detailed information regarding diversity of snakes recorded in the Atlantic Forest, the number of endemic species and their distribution ranges. While these basic data were missing, large areas of original forest have continued to be lost to increased urbanization and human population, representing a severe threat to the biodiversity. NEW INFORMATION: We recorded 28 snake species in our study area. Dipsadidae was the richest family with 14 species, followed by Colubridae (eight species), Boidae (two species), Viperidae (two species), and Anomalepididae, Elapidae and Typhlopidae (one species each). Most species were forest inhabitants (61%), of which 13 are endemic to the Atlantic Forest. There were no clearly defined species clusters regarding species composition. None of the species recorded in Niterói are listed as threatened in the Brazilian Redlist. However, most of them are strongly associated with forested areas and, perhaps, are not adapted to live in small fragments. Thus, more initiatives should be implemented to evaluate the true conservation status of these species in order to better protect them.

Taxonomic revision of Chironius flavolineatus (Jan, 1863) with description of a new species (Serpentes: Colubridae).

We conducted a taxonomic review of Chironius flavolineatus on the basis of continuous and discrete morphological characters. We recognize a new species which is distinguished from all currently recognized congeners by the following unique combination of characters: first third of body black or dark gray; vertebral stripe yellowish or creamish white distinct from dorsals of nape and extending throughout almost whole body length; head dorsum tan to brown, distinct from background color of first third of body; posterior temporal scales ranging one to four; cloacal shield frequently divided; two to four rows of keeled dorsal scales at midbody; venter ground color gradually darkening towards cloaca; region of medial constriction of hemipenis slightly covered with spinules separating calyces of apex from spines below region of constriction; in lateral view, sulcus spermaticus positioned on convex face of hemipenis; ascending process of premaxilla oblique anteroposteriorly to longitudinal axis of skull; optic fenestrae not exceeding frontoparietal suture; posterior border of supratemporal exceeding braincase; dorsoventral axis of quadrate oblique mesolaterally, moving away from longitudinal axis of skull. Furthermore, we provide data on morphological variation, distribution, and an emended diagnosis for C. flavolineatus.

A new species of Chironius Fitzinger, 1826 from the state of Bahia, Northeastern Brazil (Serpentes: Colubridae).

We describe a new species of Chironius Fitzinger, 1826 from the highlands of Chapada Diamantina, state of Bahia, Brazil. The new species is distinguished from all currently recognized congeners by a unique combination of states of characters on coloration, scale counts, scale ornamentation, and hemipenis. The new species closely resembles Chironius flavolineatus (Jan, 1863) in color pattern, but differs from the later taxon by the presence of two to four posterior temporal scales; cloacal shield entire; six to ten rows of keeled dorsal scales at midbody; ventral scales with posterior dark edges forming conspicuous transverse bars along almost the entire venter; conspicuous dark longitudinal stripes (in "zigzag") in the midventral portion of subcaudals; region of medial constriction of hemipenis slightly covered with spinules separating calyces of apex from spines below region of constriction; and sulcus spermaticus situated on convex face of hemipenis in lateral view. The new species is apparently restricted to Chapada Diamantina, corroborating the biological importance of this region from a conservational perspective.

On the identity of Chironius flavolineatus (Serpentes: Colubridae).

The snake genus Chironius Fitzinger, 1826 is endemic to the Neotropical region, occurring from Honduras to Uruguay and northeastern Argentina. Some species of the genus have taxonomic and/or nomenclatural problems, such as C. flavolineatus which lacks agreement in the literature about its authorship and type locality. Some researchers have been suggesting Jan (1863) as the author of the species since he first described C. flavolineatus based on two specimens. However, other researchers report that Jan's description is so incomplete that it is not possible to ascertain what snake he had in mind and therefore suggest Boettger (1885) as the author, since he was the first to provide a detailed description of the species. In the present study one of the syntypes of C. flavolineatus, supposedly destroyed in Second World War, was found. Thus, the taxonomic identity of C. flavolineatus was redefined, its lectotype was designated and the authorship of the taxa is attributed to Jan (1863).

Redescription of Phalotris labiomaculatus (Serpentes, Dipsadidae, Elapomorphini), with notes on the taxonomic boundaries within the nasutus group.

Phalotris labiomaculatus Lema, 2002 was described based on a single specimen from Porto Franco, south of the Brazilian state of Maranhão, being rediscovered three years later in Mateiros, a municipality in the north of the state of Tocantins, attesting to its occurrence in the cerrado of both banks of the Tocantins River. The discovery of 28 new specimens from other localities during field expeditions (2009-2011) allowed a redescription of the species, adding new data on meristic and morpho-qualitative traits. These results enable a better diagnosis of intraspecific, ontogenetic and sexual variation, consolidating its taxonomic relationships with other species belonging to the nasutus group. The distribution map of P. labiomaculatus, as well as an identification key to the species of the natusus group, are provided. The type-locality is fixed to the municipality of Porto Franco, state of Maranhão.