16S rRNA Gene Amplicon Sequencing Data for Pteris vittata Rhizosphere Soils.

Data on the 16S rRNA gene amplicon sequences from Pteris vittata rhizosphere soils are reported. The following phyla were recorded in arsenic-rich soils: Actinobacteria (59%), Proteobacteria (26%), Chloroflexi (17%), and Acidobacteria (9%). Actinobacteria (45%), Proteobacteria (22%), Chloroflexi (10%), and Acidobacteria (11%) were in natural-mineral soils.

Human health risks associated with metals in paddy plant (Oryza sativa) based on target hazard quotient and target cancer risk.

Paddy plants (Oryza sativa) contaminated with metals could be detrimental to human health if the concentrations of metals exceed the permissible limit. Thus, this study aims to assess the risk of the concentrations of As, Se, Cu, Cr, Co, and Ni and their distributions in various parts (roots, stems, leaves, and grains) of paddy plants collected from Sekinchan, Malaysia. Both soil and plant samples were digested according to the United States Environmental Protection Agency (USEPA) Method 3050B and the metal concentrations were determined by the Inductively Coupled Plasma-Mass Spectrometry (ICP-MS). The highest mean translocation factor (TF) was from soil to roots (TF roots/soil ranged from 0.12 to 6.15) and the lowest was from leaves to grain (TF grain/leaves ranged from 0.06 to 0.87). Meanwhile, the bioaccumulation factor (BAF) for all metals was less than 1.0 indicating that paddy plants only absorb metals from the soil but do not accumulate in the grains. The average daily intake for As (1.15 ± 0.25 µg/kg/day) has exceeded the limit proposed by ATSDR and IRIS USEPA (0.30 µg/kg/day). Target cancer risk (TR) of 1.10 × 10-3 for As through rice consumption indicates that the potential cancer risk exists in one out of 1000 exposed individuals. The results from this study could serve as a reference for researchers and policymakers to monitor and formulate strategies in managing As and other metals in paddy plants, especially in Southeast Asian countries.

Bioaccumulation and Health Risk Assessment of Trace Elements in Oreochromis niloticus in Bukit Merah Lake, Malaysia.

This study aims to determine the level of nine trace elements - As, Cd, Cr, Cu, Fe, Mn, Ni, Pb and Zn in liver, gill and muscle of Oreochromis niloticus in Bukit Merah Lake (BML). The concentration of trace elements was measured using Inductively Coupled Plasma-Optical Emission Spectrometers (ICP-OES). Cd and Ni were found below the detection level, while Cr was only detected in gill and muscle tissues. The Metal Pollution Index (MPI) established were liver > gill > muscle. The ranking order of trace elements in the gills was Fe > Zn > Mn > Pb > As > Cu > Cr. For the liver, the ranking order was Fe > Cu > Zn > As > Mn > Pb, while in the muscle, the ranking order was Fe > Zn > Pb > As > Cu > Mn > Cr. The estimated daily intake (EDI) for all the trace elements in this study was calculated based on 168 g.day-1 of Malaysians' fish consumption, indicating no potential risk. From the human health point of view, there was no significant non-carcinogenic risk of individual trace elements as evaluated by Target Hazard Quotient (THQ). As indicated by the Hazardous Index (HI), the cumulative effect of all trace elements also suggested no potential of non-carcinogenic risk. The carcinogenic risks assessed from Pb and As were also neglectable and there was no likelihood of getting cancer during one's life span.

Complete genome sequence of plant growth-promoting and heavy metal-tolerant Enterobacter tabaci 4M9 (CCB-MBL 5004).

Enterobacter tabaci 4M9 (CCB-MBL 5004) was reported to have plant growth-promoting and heavy metal tolerance traits. It was able to tolerate more than 300 mg/L Cd, 600 mg/L As, and 500 mg/L Pb and still maintained the ability to produce plant growth-promoting substances under metal stress conditions. To explore the genetic basis of these beneficial traits, the complete genome sequencing of 4M9 was carried out using Pacific Bioscience (PacBio) sequencing technology. The complete genome consisted of one chromosome of 4,654,430 bp with a GC content of 54.6% and one plasmid of 51,135 bp with a GC content of 49.4%. Genome annotation revealed several genes involved in plant growth-promoting traits, including the production of siderophore, indole acetic acid, and 1-aminocyclopropane-1-carboxylate deaminase; solubilization of phosphate and potassium; and nitrogen metabolism. Similarly, genes involved in heavy metals (As, Co, Zn, Cu, Mn, Se, Cd, and Fe) tolerance were detected. These support its potential as a heavy metal-tolerant plant growth-promoting bacterium and a good genetic resource that can be employed to improve phytoremediation efficiency of heavy metal-contaminated soil via biotechnological techniques. This, to the best of our knowledge, is the first report on the complete genome sequence of heavy metal-tolerant plant growth-promoting E. tabaci.

Geoaccumulation Index and Enrichment Factor of Arsenic in Surface Sediment of Bukit Merah Reservoir, Malaysia.

An investigation study was conducted in Bukit Merah Reservoir (BMR) for the assessment of arsenic concentration in the surface sediment in 23 sampling stations. The sediment samples were digested and analysed for arsenic using Inductively Coupled Plasma-Optical Emission Spectrometry (ICP-OES). Sediment parameters such as pH (4.42 ± 0.71), redox potential (121.77 ± 42.45 mV), conductivity (205.7 ± 64.07 µS cm-1) and organic matter (25.35 ± 9.34%) were also examined. The main objectives of this study are to determine the arsenic distribution and concentration and at the same time to assess the enrichment of arsenic using the geoaccumulation index (I geo ) and enrichment factor (EF). This study shows the total arsenic concentration in the surface sediment of BMR is 4.302 ± 2.43 mg kg-1 and found to be below the threshold value of Canadian Interim Sediment Quality Guidelines (ISQG). High arsenic concentration is recorded near the southern part of the lake where anthropogenic activities are prevalent. Based on I geo , 13% of sampling stations are categorised as moderately polluted, 52.2% as unpolluted to moderately polluted and the rest is categorised as unpolluted. EF shows 78.3% stations are classified as extremely high enrichment and the rest as very high enrichment. This finding provides important information on the status of arsenic contamination in BMR and creating awareness concerning the conservation and management of the reservoir in the future.

16S rRNA Gene Amplicon Sequencing Data of Tailing and Nontailing Rhizosphere Soils of Mimosa pudica from a Heavy Metal-Contaminated Ex-Tin Mining Area.

The 16S rRNA gene amplicon sequence data from tailing and nontailing rhizosphere soils of Mimosa pudica from a heavy metal-contaminated area are reported here. Diverse bacterial taxa were represented in the results, and the most dominant phyla were Proteobacteria (41.2%), Acidobacteria (17.1%), and Actinobacteria (14.4%).

The accumulation of metals and methylmercury in Nerita lineata and the relation to intertidal surface sediment concentrations.

This study was conducted to assess the reliability of Nerita lineata as a bioindicator for metals in sediment and the factors influencing the accumulation of metals and methylmercury in its soft tissue. The two matrices were analyzed for Co, Cr, Cu, THg, MeHg, Mn, Ni, Pb, and Zn. The metal concentrations in N. lineata were comparable to previously reported results with the exception of Ni which was higher. Cu, Mn, and Pb in N. lineata were significantly (p < 0.05) positively correlated with the respective elements in the sediment, while the biota-sediment accumulation factor showed that Cu, THg, MeHg, and Ni were bioconcentrated in N. lineata. This suggests that N. lineata has the potential to be a bioindicator for Cu, THg, MeHg, Mn, Ni, and Pb. The results also suggest an indirect relationship between THg in the sediment and the MeHg concentration in N. lineata in which periphyton might play a role. The affinity of Cr, Cu, Pb, and Zn with Mn (oxides) in sediment was also found to be a factor influencing their accumulation in N. lineata.

Application of enrichment factor, geoaccumulation index, and ecological risk index in assessing the elemental pollution status of surface sediments.

Sediment can accumulate trace elements in the environment. This study profiled the magnitude of As, Ba, Cd, Co, Cu, Cr, Ni, Pb, Se, and Zn pollution in surface sediments of the west coast of Peninsular Malaysia. Trace elements were digested using aqua regia and were analyzed using the inductively coupled plasma-mass spectrometry. The extent of elemental pollution was evaluated using with the enrichment factor (EF) and geoaccumulation index (Igeo). This study found that the elemental distribution in the sediment in descending order was Zn > Ba > Cr > Pb > Cu > As > Ni > Co > Se > Cd. Zn concentrations in all samples were below the interim sediment quality guideline (ISQG) (124 mg/kg). In contrast, Cd concentrations (2.34 ± 0.01 mg/kg) at Station 31 (Merlimau) exceeded the ISQG (0.70 mg/kg), and the concentrations of As in the samples from Station 9 (Tanjung Dawai) exceeded the probable effect level (41.60 mg/kg). The Igeo and EF revealed that Station 9 and Station 31 were extremely enriched with Se and Cd, respectively. All stations posed low ecological risk, except Station 31, which had moderate ecological risk. The outputs from this study are expected to provide the background levels of pollutants and help develop regional sediment quality guideline values. This study is also important in aiding relevant authorities to set priorities for resources management and policy implementation.

Geo-accumulation index and contamination factors of heavy metals (Zn and Pb) in urban river sediment.

The aim of the present study was to appraise the levels of heavy metal contamination (Zn and Pb) in sediment of the Langat River (Selangor, Malaysia). Samples were collected randomly from 15 sampling stations located along the Langat River. The parameters measured were pH, redox potential, salinity, electrical conductivity, loss of ignition, cation exchanges capacity (Na, Mg, Ca, K), and metal ions (Zn and Pb). The geo-accumulation index (I geo) and contamination factor (C f) were applied to determine and classify the magnitude of heavy metal pollution in this urban river sediment. Results revealed that the I geo of Pb indicated unpolluted to moderately polluted sediment at most of the sampling stations, whereas Zn was considered to be within background concentration. The I geo results were refined by the C f values, which showed Pb with very high C f at 12 stations. Zinc, on the other hand, had low to moderate C f values. These findings indicated that the sediment of the Langat River is severely polluted with Pb. The Zn concentration at most sampling points was well below most sediment quality guidelines. However, 40% of the sampling points were found to have a Pb concentration higher than the consensus-based probable effect concentration of 128 mg/kg (concentrations above this value are likely to cause harmful effects). This result not only highlights the severity of Pb pollution in the sediment of the Langat River, but also the potential risk it poses to the environment.

Mercury and methylmercury distribution in the intertidal surface sediment of a heavily anthrophogenically impacted saltwater-mangrove-sediment interplay zone.

Total mercury (THg) and methylmercury (MeHg) concentrations were determined from sediment samples collected from thirty sampling stations in Port Klang, Malaysia. Three stations had THg concentrations exceeding the threshold effect level of the Florida Department of Environmental Protection and the Canadian interim sediment quality guidelines. THg and MeHg concentrations were found to be concentrated in the Lumut Strait where inputs from the two most urbanized rivers in the state converged (i.e. Klang River and Langat River). This suggests that Hg in the study area likely originated from the catchments of these rivers. MeHg made up 0.06-94.96% of the sediment's THg. There is significant positive correlation (p < 0.01) between THg and MeHg concentrations. Significant positive correlation (p < 0.05) was also observed between fine sediment particles (i.e. clay and silt) with MeHg concentrations. Sediment particle size, however, was not found to have any influence on THg concentrations in the sediment in the study area.

The levels of mercury, methylmercury and selenium and the selenium health benefit value in grey-eel catfish (Plotosus canius) and giant mudskipper (Periophthalmodon schlosseri) from the Strait of Malacca.

The present study examined the concentrations of mercury (Hg), methylmercury (MeHg), and selenium (Se) in the multiple tissues of the Plotosus canius and Periophthalmodon schlosseri collected from the Strait of Malacca. The mean value in mg kg(-1) of Hg (P. canius: 0.34 ± 0.19; P. schlosseri: 0.32 ± 0.18) and MeHg in muscle (P. canius: 0.14 ± 0.11; P. schlosseri: 0.17 ± 0.11) were below the Codex general standard for contaminants and toxins in food and feed (CODEX STAN 193-1995), the Malaysian Food Regulation 1985 and the Japan Food Sanitation Law. For P. canius, the liver contained the highest concentrations of Hg (0.48 ± 0.07 mg kg(-1)) and MeHg (0.21 ± 0.00 mg kg(-1)), whereas for P. schlosseri, the gill contained the highest concentrations of Hg (0.36 ± 0.06 mg kg(-1)) and MeHg (0.21 ± 0.05 mg kg(-1)). The highest concentration of (80)Se (mg kg(-1)) was observed in the liver of P. canius (20.34 ± 5.68) and in the gastrointestinal tract (3.18 ± 0.42) of P. schlosseri. The selenium:mercury (Se:Hg) molar ratios were above 1 and the positive selenium health benefit value (HBVSe) suggesting the possible protective effects of Se against Hg toxicity. The estimate weekly intakes (EWIs) in µg kg(-1) body weight (bw) week(-1) of Hg (P. canius: 0.27; P. schlosseri: 0.15) and MeHg (P. canius: 0.11; P. schlosseri: 0.08) were found to be lower than the provisional tolerable weekly intake established by the Joint FAO/WHO Expert Committee on Food Additives (JECFA). Based on the calculated EWIs, P. canius, and P. schlosseri were found to be unlikely to cause mercury toxicity in human consumption.

Application of geoaccumulation index and enrichment factors on the assessment of heavy metal pollution in the sediments.

An investigative study was carried out in Langat River to determine the heavy metal pollution in the sediment with 22 sampling stations selected for the collection of sediment samples. The sediment samples were digested and analyzed for extractable metal ((48)Cd, (29)Cu, (30)Zn, (33)As, (82)Pb) using the Inductively Coupled Plasma-Mass Spectrometry (ICP-MS). Parameters, such as pH, Eh, electrical conductivity (EC), salinity, cation exchange capacity (CEC) and loss on ignition (LOI) were also determined. The assessment of heavy metal pollution was derived using the enrichment factors (EF) and geoaccumulation index (I(geo)). This study revealed that the sediment is predominantly by As > Cd > Pb > Zn > Cu. As recorded the highest EF value at 187.45 followed by Cd (100.59), Pb (20.32), Zn (12.42) and Cu (3.46). This is similar to the I(geo), which indicates that the highest level goes to As (2.2), exhibits moderately polluted. Meanwhile, Cd recorded 1.8 and Pb (0.23), which illustrates that both of these elements vary from unpolluted to moderately polluted. The Cu and Zn levels are below 0, which demonstrates background concentrations. The findings are expected to update the current status of the heavy metal pollution as well as creating awareness concerning the security of the river water as a drinking water source.