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1.
J Appl Microbiol ; 108(1): 357-65, 2010 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-19702858

RESUMEN

AIMS: The objective of this study was to examine the effect of dilution rates (Ds, varying from 0.05 to 0.42 h(-1)) in glucose-limited continuous culture on cell yield, cell composition, fermentation pattern and ammonia assimilation enzymes of Selenomonas ruminantium strain D. METHODS AND RESULTS: All glucose-limited continuous culture experiments were conducted under anaerobic conditions. Except for protein, all cell constituents including carbohydrates, RNA and DNA yielded significant cubic responses to Ds with the highest values at Ds of either 0.10 or 0.20 h(-1). At Ds higher than 0.2 h(-1), fermentation acid pattern shifted primarily from propionate and acetate to lactate production. Succinate also accumulated at the higher Ds (0.30 and 0.42 h(-1)). Glucose was most efficiently utilized by S. ruminantium D at 0.20 h(-1) after which decreases in glucose and ATP yields were observed. Under energy limiting conditions, glutamine synthetase (GS) and glutamate dehydrogenase (GDH) appeared to be the major enzymes involved in nitrogen assimilation suggesting that other potential ammonia incorporating enzymes were of little importance in ammonia assimilation in S. ruminantium D. GS exhibited lower activities than GDH at all Ds, which indicates that the bacterial growth rate is not a primary regulator of their activities. CONCLUSIONS: Studied dilution rates influenced cell composition, fermentation pattern and nitrogen assimilation of S. ruminantium strain D grown in glucose-limited continuous culture. SIGNIFICANCE AND IMPACT OF THE STUDY: Selenomonas ruminantium D is an ecologically and evolutionary important bacterium in ruminants and is present under most rumen dietary conditions. Characterizing the growth physiology and ammonia assimilation enzymes of S. ruminantium D during glucose limitation at Ds, which simulate the liquid turnover rates in rumen, will provide a better understanding of how this micro-organism responds to differing growth conditions.


Asunto(s)
Amoníaco/metabolismo , Proteínas Bacterianas/metabolismo , Glutamato Deshidrogenasa/metabolismo , Glutamato-Amoníaco Ligasa/metabolismo , Selenomonas/enzimología , Selenomonas/crecimiento & desarrollo , Glucosa/metabolismo
2.
Appl Environ Microbiol ; 63(2): 355-63, 1997 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-9023916

RESUMEN

Genomic libraries from nine cellobiose-metabolizing bacteria were screened for cellobiose utilization. Positive clones were recovered from six libraries, all of which encode phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) proteins. Clones from Bacillus subtilis, Butyrivibrio fibrisolvens, and Klebsiella oxytoca allowed the growth of recombinant Escherichia coli in cellobiose-M9 minimal medium. The K. oxytoca clone, pLOI1906, exhibited an unusually broad substrate range (cellobiose, arbutin, salicin, and methylumbelliferyl derivatives of glucose, cellobiose, mannose, and xylose) and was sequenced. The insert in this plasmid encoded the carboxy-terminal region of a putative regulatory protein, cellobiose permease (single polypeptide), and phospho-beta-glucosidase, which appear to form an operon (casRAB). Subclones allowed both casA and casB to be expressed independently, as evidenced by in vitro complementation. An analysis of the translated sequences from the EIIC domains of cellobiose, aryl-beta-glucoside, and other disaccharide permeases allowed the identification of a 50-amino-acid conserved region. A disaccharide consensus sequence is proposed for the most conserved segment (13 amino acids), which may represent part of the EIIC active site for binding and phosphorylation.


Asunto(s)
Celobiosa/metabolismo , Genes Bacterianos , Klebsiella/genética , Sistema de Fosfotransferasa de Azúcar del Fosfoenolpiruvato/genética , Sistema de Fosfotransferasa de Azúcar del Fosfoenolpiruvato/metabolismo , Secuencia de Aminoácidos , Secuencia de Bases , Sitios de Unión/genética , Secuencia de Consenso , Secuencia Conservada , Escherichia coli/genética , Biblioteca Genómica , Klebsiella/enzimología , Datos de Secuencia Molecular , Conformación Proteica , Proteínas Recombinantes/metabolismo , Análisis de Secuencia de ADN , Especificidad de la Especie , Especificidad por Sustrato , beta-Glucosidasa/genética , beta-Glucosidasa/metabolismo
3.
Appl Environ Microbiol ; 62(12): 4594-7, 1996 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-8953729

RESUMEN

In the last decade, a major goal of research in biofuels has been to metabolically engineer microorganisms to ferment multiple sugars from biomass or agricultural wastes to fuel ethanol. Escherichia coli strains genetically engineered to contain the pet operon (Zymomonas mobilis pyruvate decarboxylase and alcohol dehydrogenase B genes) produce high levels of ethanol. Strains carrying the pet operon in plasmid (e.g., E. coli B/pLOI297) or in chromosomal (e.g., E. coli KO11) sites require antibiotics in the media to maintain genetic stability and high ethanol productivity. To overcome this requirement, we used the conditionally lethal E. coli strain FMJ39, which carries mutations for lactate dehydrogenase and pyruvate formate lyase and grows aerobically but is incapable of anaerobic growth unless these mutations are complemented. E. coli FBR1 and FBR2 were created by transforming E. coli FMJ39 with the pet operon plasmids pLOI295 and pLOI297, respectively. Both strains were capable of anaerobic growth and displayed no apparent pet plasmid losses after 60 generations in serially transferred (nine times) anaerobic batch cultures. In contrast, similar aerobic cultures rapidly lost plasmids. In high-cell-density batch fermentations, 3.8% (wt/vol) ethanol (strain FBR1) and 4.4% (wt/vol) ethanol (strain FBR2) were made from 10% glucose. Anaerobic, glucose-limited continuous cultures of strain FBR2 grown for 20 days (51 generations; 23 with tetracycline and then 28 after tetracycline removal) showed no loss of antibiotic resistance. Anaerobic, serially transferred batch cultures and high-density fermentations were inoculated with cells taken at 57 generations from the previous continuous culture. Both cultures continued to produce high levels of ethanol in the absence of tetracycline. The genetic stability conferred by selective pressure for pet-containing cells without requirement for antibiotics suggests potential commercial suitability for E. coli FBR1 and FBR2.


Asunto(s)
Acetiltransferasas/deficiencia , Alcohol Deshidrogenasa/genética , Escherichia coli/genética , Etanol/metabolismo , L-Lactato Deshidrogenasa/deficiencia , Operón , Piruvato Descarboxilasa/genética , Acetiltransferasas/genética , Farmacorresistencia Microbiana , Escherichia coli/efectos de los fármacos , Escherichia coli/metabolismo , L-Lactato Deshidrogenasa/genética
4.
Curr Microbiol ; 31(5): 294-300, 1995 Nov.
Artículo en Inglés | MEDLINE | ID: mdl-7580800

RESUMEN

Streptococcus bovis is commonly present in the rumen, but strains of S. bovis have also occasionally been isolated from human blood or fecal samples. Studies were undertaken with 16s rRNA gene sequences and DNA hybridizations to define the genetic relationships between these two groups of strains. Ruminal strains were found to yield genomic DNA restriction endonuclease digest patterns different from human strains when either the 16s rRNA gene amplified from ruminal S. bovis strain JB1 or a conserved universal 23s rRNA fragment was used as probes. A DNA probe based on the V1 region of the 16s rRNA of S. bovis JB1 was found to hybridize to DNAs of other ruminal S. bovis strains (K27FF4, 21-09-6C, five new ruminal isolates, and weak hybridization was found with DNAs from S. bovis 33317 (type strain), S. equinus 9812, and six other ruminal isolates. No hybridization occurred with strains representing different major human biotypes/homology groups (43143, 43144, 27960, V1387). All ruminal S. bovis strains had a guanosine plus cytosine DNA content of 37.4-38.8 mol% and, based on DNA-DNA genomic hybridizations, could be separated into two homology groups, one of which included S. equinus 9812 and S. bovis 33317. Both ruminal groups had less than 38% DNA homology to the human strains, indicating ruminal strains are clearly two separate species distinct from the human strains.


Asunto(s)
ADN Bacteriano/genética , Rumen/microbiología , Streptococcus bovis/clasificación , Animales , Secuencia de Bases , Humanos , Datos de Secuencia Molecular , Sondas ARN , ARN Ribosómico 16S , Homología de Secuencia de Ácido Nucleico , Especificidad de la Especie , Streptococcus bovis/genética
5.
Appl Environ Microbiol ; 61(8): 3042-50, 1995 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-7487036

RESUMEN

Hemicelluloses, mainly xylans, can be a major component of diets consumed by ruminants and undergo various degrees of microbial digestion in the rumen. The ability of Butyrivibrio fibrisolvens, a major xylanolytic ruminal species, to degrade and utilize nine chemically and physically different xylans for growth was examined. The arabinoxylans used included two isolated from corncobs (CCX-A and CCX-B), a native xylan excreted by corn cell tissue cultures (CX), an oxalic acid-treated, arabinose-depleted CX, and oat spelt xylan. Except for CCX-A, these xylans were extensively converted within 3 h of growth to acid-alcohol-soluble forms that remained at high levels for the duration of culture growth. These xylans contain mainly xylose and arabinose with small amounts of uronic acids. For a given xylan, all three components were used at about the same rate and extent. During the early stages of growth B. fibrisolvens also rapidly solubilized glucuronoxylans from birchwood, larchwood, 4-O-methylglucuronoxylan, and the xylose homopolymer xylan isolated from beechwood (BEWX). In contrast to the findings for the arabinoxylans, little acid-alcohol-soluble carbohydrate remained in these cultures after 9 h of growth, except for BEWX. Initially, with birchwood, larchwood, and 4-O-methylglucuronoxylan the uronic acid components were preferentially used over the xylose. Final xylan utilization measured at 72 h for all xylans varied from 57% for CCX-A to 92% for BEWX and was correlated with the initial 12-h utilization rate for a given xylan. Since CCX-A and BEWX are both highly water insoluble, this aspect did not appear to influence overall utilization.(ABSTRACT TRUNCATED AT 250 WORDS)


Asunto(s)
Bacterias Anaerobias Gramnegativas/metabolismo , Xilanos/metabolismo , Animales , Digestión , Glicósido Hidrolasas/metabolismo , Bacterias Anaerobias Gramnegativas/crecimiento & desarrollo , Cinética , Xilano Endo-1,3-beta-Xilosidasa , Xilanos/química , Xilosidasas/metabolismo
6.
Can J Microbiol ; 39(10): 912-21, 1993 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-8261331

RESUMEN

Most Butyrivibrio strains have been isolated from the gastrointestinal tract of animals and have been classified as Butyrivibrio fibrisolvens. A few strains isolated from human feces are designated as Butyrivibrio crossatus, the other species in this genus. Butyrivibrio fibrisolvens strains are anaerobic, curved rods that produce butyrate, but numerous studies have shown that these strains display considerable variations in phenotypic properties and heterogeneity in DNA relatedness. Although over 60 strains have been characterized in these respects, the cell wall structure of only a few strains has been studied. In this study, cell wall related properties of 12 strains representative of five DNA relatedness groups were examined. All strains were very sensitive to penicillin and other antibiotics that interfere with cell wall synthesis. Although an occasional resistant strain was found, most strains were sensitive to a variety of protein synthesis antibiotics that included aminoglycosides and tetracycline. In contrast, all strains were highly resistant to nalidixic acid. Peptidoglycans were isolated from seven B. fibrisolvens strains and Lachnospira multiparus. Compositional analyses indicated molar ratios of 0.7:2:2:1:0.8 for muramic acid, glucosamine, alanine, glutamic acid, and diaminopimelic acid, respectively, in all peptidoglycans, which also showed a low degree of cross-linking. A trichloroacetic acid extractable galactosamine-containing polysaccharide copurified with the Butyrivibrio peptidoglycans. Electron microscopy of thin sections showed all strains to possess a Gram-positive type of cell wall that was atypically thin (12-18 nm). Most strains also displayed external (surface) polysaccharide layers. Cytoplasmic inclusions and granules were evident in many strains and were composed of polysaccharides, on the basis of cell composition analyses. The findings that Butyrivibrio strains have overall similarities in cell wall properties, but differences in DNA relatedness, suggest that these organisms should be classified as several more species in the same genus or family.


Asunto(s)
Bacteroidaceae/química , Bacteroidaceae/ultraestructura , Antibacterianos/farmacología , Bacteroidaceae/efectos de los fármacos , Pared Celular/química , Pruebas de Sensibilidad Microbiana , Microscopía Electrónica , Peptidoglicano/química
7.
Appl Environ Microbiol ; 58(4): 1082-8, 1992 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-16348679

RESUMEN

An alpha-l-arabinofuranosidase (EC 3.2.1.55) was purified from the cytoplasm of Butyrivibrio fibrisolvens GS113. The native enzyme had an apparent molecular mass of 240 kDa and was composed of eight polypeptide subunits of 31 kDa. The enzyme displayed an isoelectric point of 6.0, a pH optimum of 6.0 to 6.5, a pH stability of 4.0 to 8.0, and a temperature optimum of 45 degrees C and was stable to 55 degrees C. The K(m) and V(max) for p-nitrophenyl-alpha-l-arabinofuranoside were 0.7 mM and 109 mumol/min/mg of protein, respectively. The enzyme was specific for the furanoside configuration and also readily cleaved methylumbelliferyl-alpha-l-arabinofuranoside but had no activity on a variety of other nitrophenyl- or methylumbelliferyl glycosides. When the enzyme was incubated with cellulose, carboxymethyl cellulose, or arabinogalactan, no release of sugars was found. Arabinose was found as the hydrolysis product of oatspelt xylan, corn endosperm xylan, or beet arabinan. No activity was detected when either coumaric or ferulic acid ester linked to arabinoxylobiose was used as substrates, but arabinoxylobiose was degraded to arabinose and xylobiose. Since B. fibrisolvens GS113 possesses essentially no extracellular arabinofuranosidase activity, the major role of the purified enzyme is apparently in the assimilation of arabinose-containing xylooligosaccharides generated from xylosidase, phenolic esterase, xylanase, and other enzymatic activities on xylans.

8.
J Bacteriol ; 173(19): 6101-9, 1991 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-1917844

RESUMEN

The 16S rRNA sequences were determined for species of Spirochaeta, Treponema, Borrelia, Leptospira, Leptonema, and Serpula, using a modified Sanger method of direct RNA sequencing. Analysis of aligned 16S rRNA sequences indicated that the spirochetes form a coherent taxon composed of six major clusters or groups. The first group, termed the treponemes, was divided into two subgroups. The first treponeme subgroup consisted of Treponema pallidum, Treponema phagedenis, Treponema denticola, a thermophilic spirochete strain, and two species of Spirochaeta, Spirochaeta zuelzerae and Spirochaeta stenostrepta, with an average interspecies similarity of 89.9%. The second treponeme subgroup contained Treponema bryantii, Treponema pectinovorum, Treponema saccharophilum, Treponema succinifaciens, and rumen strain CA, with an average interspecies similarity of 86.2%. The average interspecies similarity between the two treponeme subgroups was 84.2%. The division of the treponemes into two subgroups was verified by single-base signature analysis. The second spirochete group contained Spirochaeta aurantia, Spirochaeta halophila, Spirochaeta bajacaliforniensis, Spirochaeta litoralis, and Spirochaeta isovalerica, with an average similarity of 87.4%. The Spirochaeta group was related to the treponeme group, with an average similarity of 81.9%. The third spirochete group contained borrelias, including Borrelia burgdorferi, Borrelia anserina, Borrelia hermsii, and a rabbit tick strain. The borrelias formed a tight phylogenetic cluster, with average similarity of 97%. THe borrelia group shared a common branch with the Spirochaeta group and was closer to this group than to the treponemes. A single spirochete strain isolated fromt the shew constituted the fourth group. The fifth group was composed of strains of Serpula (Treponema) hyodysenteriae and Serpula (Treponema) innocens. The two species of this group were closely related, with a similarity of greater than 99%. Leptonema illini, Leptospira biflexa, and Leptospira interrogans formed the sixth and most deeply branching group. The average similarity within this group was 83.2%. This study represents the first demonstration that pathogenic and saprophytic Leptospira species are phylogenetically related. The division of the spirochetes into six major phylogenetic clusters was defined also by sequence signature elements. These signature analyses supported the conclusion that the spirochetes represent a monophylectic bacterial phylum.


Asunto(s)
Filogenia , ARN Ribosómico 16S/genética , Spirochaeta/genética , Animales , Secuencia de Bases , Datos de Secuencia Molecular , ARN Ribosómico 16S/química , Musarañas , Especificidad de la Especie
9.
Appl Environ Microbiol ; 57(9): 2703-9, 1991 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-1662939

RESUMEN

Anaerobic filter matings of Butyrivibrio fibrisolvens H17c, CF3, D1, or GS113, representing different DNA relatedness groups, were done with Enterococcus faecalis CG110, which contains chromosomally inserted Tn916. Tetracycline-resistant transconjugants were obtained with each mating pair at average frequencies of 4.4 x 10(-6) (per recipient) and 5.2 x 10(-6) (per donor). The transfer frequencies of Tn916 into B. fibrisolvens varied 5- to 10-fold with mating time, strain, and growth stage. By using Southern hybridization with pAM120 as the probe, Tn916 was shown to insert at one or more separate chromosomal sites for each strain of B. fibrisolvens. Retransfer of Tn916 from B. fibrisolvens H17c or CF3 to E. faecalis OG1-X or JH 2-2 or to B. fibrisolvens D1 or GS113 could not be shown. Matings of E. faecalis RH110, which contains chromosomally inserted Tn916 delta E, with B. fibrisolvens 49, H17c, D1, CF3, GS113, or VV-1 resulted in erythromycin-resistant transconjugants at average frequencies of 5.3 x 10(-7) (per recipient) and 2.5 x 10(-7) (per donor). Tn916 delta E was shown by Southern hybridization with pAM120 to insert at one or more sites in the chromosome of each strain. B. fibrisolvens H17c was anaerobically filter mated with E. faecalis JH 2-SS, which contains pAM beta 1. Erythromycin-resistant transconjugants were obtained at frequencies of 2 x 10(-5) (per recipient) and 6 x 10(-5) (per donor). The presence of pAM beta 1 in these transconjugants could not be shown by agarose gel electrophoresis of plasmid minilysates but could be shown by Southern hybridization analysis.(ABSTRACT TRUNCATED AT 250 WORDS)


Asunto(s)
Bacteroidaceae/genética , Conjugación Genética , Elementos Transponibles de ADN , Enterococcus faecalis/genética , Plásmidos , Bacteroidaceae/efectos de los fármacos , Bacteroidaceae/crecimiento & desarrollo , Farmacorresistencia Microbiana/genética , Enterococcus faecalis/efectos de los fármacos , Enterococcus faecalis/crecimiento & desarrollo
10.
Appl Environ Microbiol ; 57(9): 2710-3, 1991 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-1662940

RESUMEN

The transposon Tn916 and self-mobilizing plasmid pAM beta 1 were conjugated from Enterococcus faecalis to the ruminal bacterium Streptococcus bovis JB1. Transconjugants were identified by resistance to tetracycline (Tn916) or erythromycin (pAM beta 1) and by Southern hybridization analyses. Transfer frequencies were 7.0 x 10(-6) and 1.0 x 10(-6) per recipient cell for Tn916 and pAM beta 1, respectively. The transconjugants JB1/Tn916 and JB1/pAM beta 1 were used as donors for matings with E. faecalis, Bacillus subtilis, and the ruminal bacterium Butyrivibrio fibrisolvens. While pAM beta 1 was successfully transferred to all three organisms, Tn916 was transferred only into B. subtilis and B. fibrisolvens at very low frequencies. This is the first report of conjugal DNA transfers between two ruminal organisms.


Asunto(s)
Conjugación Genética , Elementos Transponibles de ADN , Plásmidos , Streptococcus bovis/genética , Enterococcus faecalis/genética
11.
Appl Environ Microbiol ; 57(7): 2016-20, 1991 Jul.
Artículo en Inglés | MEDLINE | ID: mdl-1892390

RESUMEN

Most strains of Butyrivibrio fibrisolvens are known to produce extracellular polysaccharides (EPs). However, the rheological and functional properties of these EPs have not been determined. Initially, 26 strains of Butyrivibrio were screened for EP yield and apparent viscosities of cell-free supernatants. Yields ranged from less than 1.0 to 16.3 mg per 100 mg of glucose added to the culture. Viscosities ranged from 0.71 to 5.44 mPa.s. Five strains (CF2d, CF3, CF3a, CE51, and H10b) were chosen for further screening. The apparent viscosity of the EP from each of these strains decreased by only 50 to 60% when the shear rate was increased from 20 to 1,000 s-1. Strain CE51 produced the EP having the highest solution viscosity. A detailed comparison of shear dependency of the EP from strain CF3 with xanthan gum showed that this EP was less shear sensitive than xanthan gum and, at a shear rate of 1,000 s-1, more viscous. EPs from strains CF3 and H10b were soluble over a wide range of pH (1 to 13) in 80% (vol/vol) ethanol-water or in 1% (wt/vol) salt solutions. The pH of 1% EP solutions was between 4.5 and 5.5. Addition of acid increased solution viscosities, whereas addition of base decreased viscosity. EPs from strains CF3, CE51, and H10b displayed qualitatively similar infrared spectra. Calcium and sodium were the most abundant minerals in the three EPs. The amounts of magnesium, calcium, and iron varied considerably among the EPs, but the potassium contents remained relatively constant.


Asunto(s)
Bacteroidaceae/metabolismo , Polisacáridos Bacterianos/química , Glucosa/metabolismo , Minerales/química , Polisacáridos Bacterianos/biosíntesis , Polisacáridos Bacterianos/aislamiento & purificación , Soluciones , Especificidad de la Especie , Espectrofotometría Infrarroja , Viscosidad
12.
Appl Environ Microbiol ; 57(1): 277-82, 1991 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-2036016

RESUMEN

The xylanase gene from the ruminal bacterium Bacteroides ruminicola 23 is highly expressed in colonic Bacteroides species when carried on plasmid pVAL-RX. In order to stabilize xylanase expression in the absence of antibiotic selection, the xylanase gene was introduced into the chromosome of Bacteroides thetaiotaomicron 5482 by using suicide vector pVAL-7. Xylanase activity in the resulting strain, B. thetaiotaomicron BTX, was about 30% of that observed in B. thetaiotaomicron 5482 containing the xylanase gene on pVAL-RX. The data obtained from continuous culture experiments using antibiotic-free medium showed that expression of xylanase activity in strain BTX was extremely stable, with no demonstrated loss of the inserted xylanase gene over 60 generations, with dilution rates from 0.42 to 0.03 h-1. In contrast, the plasmid-borne xylanase gene was almost completely lost by 60 generations in the absence of antibiotic selection. Incubation of strain BTX with oatspelt xylan resulted in the degradation of more than 40% of the xylan to soluble xylooligomers. The stability of xylanase expression in B. thetaiotaomicron BTX suggests that this microorganism might be suitable for introduction into the rumen and increased xylan degradation.


Asunto(s)
Bacteroides/enzimología , Genes Bacterianos , Glicósido Hidrolasas/genética , Animales , Bacteroides/genética , Cromosomas Bacterianos , Fermentación , Expresión Génica , Vectores Genéticos , Glicósido Hidrolasas/metabolismo , Rumen/microbiología , Xilano Endo-1,3-beta-Xilosidasa , Xilanos
13.
J Dairy Sci ; 73(10): 3013-22, 1990 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-2283426

RESUMEN

Hemicelluloses or xylans are major components (35%) of plant materials. For ruminant animals, about 50% of the dietary xylans are degraded, but only small amounts of xylans are degraded in the lower gut of nonruminant animals and humans. In the rumen, the major xylanolytic species are Butyrivibrio fibrisolvens and Bacteroides ruminicola. In the human colon, Bacteroides ovatus and Bacteroides fragilis subspecies "a" are major xylanolytic bacteria. Xylans are chemically complex, and their degradation requires multiple enzymes. Expression of these enzymes by gut bacteria varies greatly among species. Butyrivibrio fibrisolvens makes extracellular xylanases but Bacteroides species have cell-bound xylanase activity. Biochemical characterization of xylanolytic enzymes from gut bacteria has not been done. A xylosidase gene has been cloned from B. fibrosolvens 113. The data from DNA hybridizations using a xylanase gene cloned from B. fibrisolvens 49 indicate this gene may be present in other B. fibrisolvens strains. A cloned xylanase from Bact. ruminicola was transferred to and highly expressed in Bact. fragilis and Bact. uniformis. Arabinosidase and xylosidase genes from Bact. ovatus have been cloned and both activities appear to be catalyzed by a single, bifunctional, novel enzyme. Continued research in genetic and biochemical areas will provide knowledge and insights for manipulation of digestion at the gut level and improved understanding of colonic fiber digestion.


Asunto(s)
Bacterias/metabolismo , Digestión , Sistema Digestivo/microbiología , Rumiantes/metabolismo , Xilanos/metabolismo , Animales , Bacterias/genética
14.
J Bacteriol ; 172(5): 2408-12, 1990 May.
Artículo en Inglés | MEDLINE | ID: mdl-2110141

RESUMEN

Genes coding for three xylan-degrading activities, xylanase, xylosidase, and arabinosidase, were simultaneously cloned from the colonic anaerobic organism Bacteriodes ovatus. The genes for the three enzymes were located on a 3.8-kilobase EcoRI genomic insert and were cloned by using plasmid pUC18. All three activities were expressed in Escherichia coli JM83, and all were cell associated. Expression of the xylanase gene was independent from expression of the xylosidase and arabinosidase genes, whereas expression of the latter two genes appeared to be coordinated. Restriction endonuclease analysis of the arabinosidase and xylosidase genes and partial purification of these enzyme activities from E. coli suggested that these activities were catalyzed by a bifunctional protein or two proteins of very similar molecular weight. All three enzyme activities were regulated in B. ovatus in response to the carbon source used for growth. This is the first report of the cloning and expression of B. ovatus genes.


Asunto(s)
Bacteroides/genética , Genes Bacterianos , Glicósido Hidrolasas/genética , Familia de Multigenes , Polisacáridos/metabolismo , Xilanos/metabolismo , Xilosidasas/genética , Bacteroides/enzimología , Cromatografía en Capa Delgada , Clonación Molecular , Electroforesis en Gel de Poliacrilamida , Inducción Enzimática , Escherichia coli/genética , Glicósido Hidrolasas/biosíntesis , Glicósido Hidrolasas/metabolismo , Peso Molecular , Oligosacáridos/aislamiento & purificación , Plásmidos , Mapeo Restrictivo , Especificidad por Sustrato , Xilano Endo-1,3-beta-Xilosidasa , Xilosidasas/biosíntesis , Xilosidasas/metabolismo
15.
FEMS Microbiol Lett ; 54(1-3): 61-5, 1990 Jan 01.
Artículo en Inglés | MEDLINE | ID: mdl-2323546

RESUMEN

A cloned xylanase gene from the ruminal bacterium Bacteroides ruminicola 23 was transferred by conjugation into the colonic species Bacteroides fragilis and Bacteroides uniformis by using the Escherichia coli-Bacteroides shuttle vector pVAL-1. The cloned gene was expressed in both species, and xylanase specific activity in crude extracts was found to be at least 1400-fold greater than that found in the B. ruminicola strain. Analysis of crude extract proteins from the recombinant B. fragilis by SDS-PAGE demonstrated a new 60,000 molecular weight protein. The xylanase activity expressed in both E. coli and B. fragilis was capable of degrading xylan to xylooligosaccharides in vitro. This is the first demonstration that colonic Bacteroides species can express a gene from a ruminal Bacteroides species.


Asunto(s)
Bacteroides/genética , Genes Bacterianos , Glicósido Hidrolasas/genética , Bacteroides/enzimología , Bacteroides fragilis/enzimología , Bacteroides fragilis/genética , Clonación Molecular , Conjugación Genética , Regulación Bacteriana de la Expresión Génica , Regulación Enzimológica de la Expresión Génica , Plásmidos , Especificidad de la Especie , Xilano Endo-1,3-beta-Xilosidasa
16.
Appl Environ Microbiol ; 55(8): 2089-91, 1989 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-2782879

RESUMEN

A quantitative technique suitable for the determination of adherence of ruminal bacteria to cellulose was developed. This technique employs adherence of cells to cellulose disks and alleviates the problem of nonspecific cell entrapment within cellulose particles. By using this technique, it was demonstrated that the adherence of Ruminococcus flavefaciens FD1 to cellulose was inhibited by formaldehyde, methylcellulose, and carboxymethyl cellulose. Adherence was unaffected by acid hydrolysates of methylcellulose, glucose, and cellobiose.


Asunto(s)
Bacterias/metabolismo , Adhesión Bacteriana , Celulosa/metabolismo , Rumen/microbiología , Animales , Bacteroides/metabolismo , Clostridium/metabolismo , Eubacterium/metabolismo , Bacterias Gramnegativas/metabolismo , Peptococcaceae/metabolismo
17.
Appl Environ Microbiol ; 55(4): 893-6, 1989 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-2658806

RESUMEN

A gene coding for xylanase activity in the ruminal bacterial strain 23, the type strain of Bacteroides ruminicola, was cloned into Escherichia coli JM83 by using plasmid pUC18. AB. ruminicola 23 genomic library was prepared in E. coli by using BamHI-digested DNA, and transformants were screened for xylanase activity on the basis of clearing areas around colonies grown on Remazol brilliant blue R-xylan plates. Six clones were identified as being xylanase positive, and all six contained the same 5.7-kilobase genomic insert. The gene was reduced to a 2.7-kilobase DNA fragment. Xylanase activity produced by the E. coli clone was found to be greater than that produced by the original B. ruminicola strain. Southern hybridization analysis of genomic DNA from the related B. ruminicola strains, D31d and H15a, by using the strain 23 xylanase gene demonstrated one hybridizing band in each DNA.


Asunto(s)
Bacteroides/genética , Escherichia coli/genética , Regulación de la Expresión Génica , Glicósido Hidrolasas/genética , Animales , Bacteroides/enzimología , Southern Blotting , Clonación Molecular , ADN Bacteriano/genética , Electroforesis en Gel de Agar , Electroforesis en Gel de Poliacrilamida , Hibridación de Ácido Nucleico , Plásmidos , Mapeo Restrictivo , Rumen/microbiología , Xilano Endo-1,3-beta-Xilosidasa
18.
Appl Environ Microbiol ; 55(2): 306-11, 1989 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-2497707

RESUMEN

The gene encoding the principal Butyrivibrio fibrisolvens xylosidase (xylB) has been cloned and expressed in Escherichia coli under the control of the lac promoter. The coding region for this gene was localized within a 3.2-kilobase B. fibrisolvens DNA fragment in pUC18. A new protein band was observed in recombinant E. coli containing xylB. This protein (approximately 60,000 molecular weight) was presumed to be the xylosidase monomer. The optimal pH (5.5) and substrate range for the recombinant and native xylosidases appeared identical. Both enzymes hydrolyzed xylo-oligosaccharides with chain lengths of 2 to 5 and both were inactive on xylan.


Asunto(s)
Bacterias Anaerobias/genética , Clonación Molecular , Escherichia coli/genética , Genes Bacterianos , Genes , Glicósido Hidrolasas/genética , Xilosidasas/genética , Bacterias Anaerobias/enzimología , Hibridación de Ácido Nucleico , Plásmidos , Proteínas Recombinantes/aislamiento & purificación , Mapeo Restrictivo , Xilosidasas/aislamiento & purificación
19.
Microbiol Sci ; 5(12): 362-5, 1988 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-3079179

RESUMEN

The ruminant animal is dependent upon anaerobic microorganisms for the digestion of plant materials in the rumen. The resultant microbial cells and fermentation acids are primary nutrients for the animal. Polysaccharides, such as hemicelluloses, are only partially degraded because of the chemical complexities of plant materials and biochemical processes involved in degradation.


Asunto(s)
Bacterias/metabolismo , Fermentación , Polisacáridos/metabolismo , Rumiantes/microbiología , Animales
20.
Appl Environ Microbiol ; 54(8): 1917-22, 1988 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-3178205

RESUMEN

Thirty strains of Butyrivibrio fibrisolvens isolated in diverse geographical locations were examined for esterase activity by using naphthyl esters of acetate, butyrate, caprylate, laurate, and palmitate. All strains possessed some esterase activity, and high levels of activity were observed with strains 49, H17c, S2, AcTF2, and LM8/1B. Esterase activity also was detected in other ruminal bacteria (Bacteroides ruminicola, Selenomonas ruminantium, Ruminobacter amylophilus, and Streptococcus bovis). For all B. fibrisolvens strains tested, naphthyl fatty acid esterase activity paralleled culture growth and was predominantly cell associated. With strains 49, CF4c, and S2, the activity was retained by protoplasts made from whole cells. Esterase activity was detected with all strains when grown on glucose, and some strains showed higher activity levels when grown on other substrates (larchwood xylan or citrus pectin). When nitrophenyl esters of fatty acids were used to measure esterase activity, generally four- to sevenfold-higher activity levels were detected, and with a number of strains substantial levels were found in the culture fluid. Cultures of these strains (H17c, NOR37, D1, and D30g) contained xylanase and acetyl xylan esterase activities, neither of which was associated to any great extent with the cells. Acetyl xylan esterase has not been previously detected in ruminal bacteria and may be important to overall digestion of forage by these organisms.


Asunto(s)
Esterasas/metabolismo , Bacterias Aerobias Gramnegativas/enzimología , Rumen/microbiología , Animales , Ésteres , Naftoles/metabolismo , Nitrofenoles/metabolismo , Pectinas/metabolismo , Protoplastos/enzimología , Especificidad por Sustrato , Xilanos/metabolismo
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